Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 H 1.09001 * 109.47464 * 184.34809 * 3 2 1 5 5 N 1.46905 * 109.47344 * 64.34306 * 3 2 1 6 6 C 1.46899 * 110.99566 * 82.97735 * 5 3 2 7 7 C 1.50708 * 109.46690 * 304.34577 * 3 2 1 8 8 O 1.21288 * 119.99750 * 120.00382 * 7 3 2 9 9 N 1.34773 * 119.99869 * 299.99775 * 7 3 2 10 10 C 1.46501 * 119.99736 * 180.02562 * 9 7 3 11 11 C 1.50693 * 109.47233 * 89.99994 * 10 9 7 12 12 H 1.07996 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37887 * 119.99895 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99634 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99927 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47281 * 89.99699 * 15 13 11 17 17 H 1.48504 * 109.46753 * 210.00015 * 15 13 11 18 18 H 1.48504 * 109.47039 * 329.99734 * 15 13 11 19 19 C 1.46494 * 120.00210 * 0.02562 * 9 7 3 20 20 C 1.53001 * 117.50088 * 188.74627 * 19 9 7 21 21 C 1.52999 * 117.50380 * 120.08460 * 19 9 7 22 22 H 1.08997 * 109.47182 * 305.59070 * 1 2 3 23 23 H 1.09000 * 109.47119 * 65.59563 * 1 2 3 24 24 H 1.08998 * 109.47039 * 185.59104 * 1 2 3 25 25 H 1.09006 * 109.46782 * 119.99741 * 2 1 3 26 26 H 1.08993 * 109.47548 * 239.99692 * 2 1 3 27 27 H 1.00898 * 110.99790 * 206.92595 * 5 3 2 28 28 H 1.08994 * 109.47555 * 55.08649 * 6 5 3 29 29 H 1.09001 * 109.46996 * 175.09370 * 6 5 3 30 30 H 1.09005 * 109.46841 * 295.07979 * 6 5 3 31 31 H 1.09002 * 109.47215 * 210.00555 * 10 9 7 32 32 H 1.08998 * 109.46999 * 329.99666 * 10 9 7 33 33 H 0.97008 * 119.99890 * 180.02562 * 14 13 11 34 34 H 1.09003 * 115.54755 * 334.40869 * 19 9 7 35 35 H 1.09004 * 117.49637 * 359.97438 * 20 19 9 36 36 H 1.08997 * 117.50129 * 145.01444 * 20 19 9 37 37 H 1.09002 * 117.50296 * 214.97964 * 21 19 9 38 38 H 1.09004 * 117.49497 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 -0.0779 5 7 1.6379 2.1041 1.2485 6 6 2.5751 1.7911 2.3355 7 6 1.4517 2.1832 -1.1732 8 8 0.7650 3.1656 -0.9875 9 7 1.6886 1.7541 -2.4286 10 6 1.1171 2.4745 -3.5690 11 6 2.0792 3.5422 -4.0220 12 1 3.0223 3.6709 -3.5118 13 6 1.7560 4.3540 -5.0887 14 7 2.5959 5.2854 -5.4843 15 14 0.1250 4.1308 -5.9716 16 1 -0.9065 4.9843 -5.3293 17 1 0.2756 4.5232 -7.3959 18 1 -0.2904 2.7073 -5.8917 19 6 2.5175 0.5672 -2.6528 20 6 2.9196 0.2483 -4.0942 21 6 1.8760 -0.6154 -3.3814 22 1 -0.3633 0.5981 0.8357 23 1 -0.3633 0.4246 -0.9358 24 1 -0.3633 -1.0228 0.1001 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.5547 3.1012 1.1186 28 1 3.5876 2.0541 2.0294 29 1 2.3044 2.3615 3.2241 30 1 2.5285 0.7254 2.5599 31 1 0.9375 1.7765 -4.3867 32 1 0.1754 2.9362 -3.2722 33 1 2.3683 5.8568 -6.2345 34 1 3.2396 0.3430 -1.8676 35 1 2.5669 0.9214 -4.8757 36 1 3.9058 -0.1861 -4.2573 37 1 2.1761 -1.6177 -3.0757 38 1 0.8369 -0.5104 -3.6935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692035420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = 0.230878 kcal Electronic energy + Delta-G solvation = -18387.990801 eV Core-core repulsion = 15652.779555 eV Total energy + Delta-G solvation = -2735.211247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86702 -37.12919 -35.91382 -33.22533 -32.50367 -31.80384 -28.59487 -26.80986 -24.29481 -22.75279 -22.40778 -22.03221 -20.33337 -18.36658 -17.10975 -16.83775 -16.08965 -15.34353 -14.86142 -14.47563 -14.09473 -13.84461 -13.72100 -13.09814 -12.86894 -12.72690 -12.50045 -11.91754 -11.83613 -11.71069 -11.23168 -11.11192 -11.06895 -10.93915 -10.79504 -10.48564 -10.44340 -10.17654 -9.97494 -9.51586 -8.92615 -8.60755 -8.35760 -7.61244 -6.10481 -4.08977 3.23749 3.27096 3.32855 3.35529 3.61978 4.26499 4.37451 4.41482 4.79290 5.09845 5.16450 5.20381 5.23980 5.27110 5.35609 5.42412 5.53245 5.57343 5.76299 5.85851 5.90226 6.01800 6.09716 6.15594 6.31847 6.35528 6.57837 6.62498 6.68804 6.90907 7.04797 7.30358 7.51164 7.58322 8.22262 8.45099 8.89580 8.95645 9.49641 11.02835 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.008109 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.035848 B = 3452.107494 C = 3866.649308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.067 3.933 4 H 0.062 0.938 5 N -0.676 5.676 6 C 0.029 3.971 7 C 0.516 3.484 8 O -0.531 6.531 9 N -0.562 5.562 10 C 0.215 3.785 11 C -0.524 4.524 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.077 3.923 20 C -0.174 4.174 21 C -0.203 4.203 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.357 0.643 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -13.129 9.124 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.046 4.046 4 H 0.080 0.920 5 N -0.310 5.310 6 C -0.121 4.121 7 C 0.303 3.697 8 O -0.408 6.408 9 N -0.292 5.292 10 C 0.094 3.906 11 C -0.563 4.563 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.029 4.029 20 C -0.212 4.212 21 C -0.241 4.241 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.178 0.822 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.561 -12.897 9.248 15.880 hybrid contribution 0.145 0.548 -0.863 1.032 sum -0.416 -12.349 8.385 14.933 Atomic orbital electron populations 1.21642 0.94989 1.00699 1.02765 1.21671 0.97624 0.93593 1.02278 1.21565 0.97954 0.95684 0.89413 0.92027 1.60270 1.49354 1.17024 1.04392 1.22248 0.93513 1.01755 0.94584 1.20157 0.81333 0.84440 0.83772 1.90665 1.39126 1.26496 1.84496 1.47341 1.48961 1.26396 1.06528 1.19671 0.95310 0.92117 0.83458 1.21274 1.04582 1.15266 1.15142 0.90772 1.24841 0.96658 0.94686 0.96744 1.69892 1.35990 1.20221 1.27391 0.86900 0.84781 0.79161 0.79171 1.19880 1.21013 1.19097 1.21536 0.97271 0.87363 0.96700 1.23388 0.99166 1.02492 0.96156 1.23450 0.99299 0.95439 1.05951 0.91337 0.93082 0.93546 0.91816 0.90353 0.82194 0.96086 0.91438 0.91901 0.95104 0.94547 0.92559 0.86327 0.86585 0.88632 0.88717 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.43 37.16 0.35 -1.67 16 2 C -0.11 -1.47 5.41 -26.73 -0.14 -1.62 16 3 C 0.07 1.04 1.93 -68.86 -0.13 0.91 16 4 H 0.06 0.90 7.18 -51.93 -0.37 0.53 16 5 N -0.68 -10.06 5.85 -115.24 -0.67 -10.74 16 6 C 0.03 0.33 10.52 60.06 0.63 0.96 16 7 C 0.52 10.59 5.74 -10.98 -0.06 10.53 16 8 O -0.53 -13.02 15.27 5.55 0.08 -12.94 16 9 N -0.56 -11.56 2.79 -167.47 -0.47 -12.02 16 10 C 0.21 5.22 3.53 -5.20 -0.02 5.20 16 11 C -0.52 -14.89 9.74 -34.44 -0.34 -15.23 16 12 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 15 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 19 C 0.08 1.24 4.35 -67.93 -0.30 0.94 16 20 C -0.17 -2.74 9.72 -26.69 -0.26 -3.00 16 21 C -0.20 -2.76 9.39 -26.69 -0.25 -3.01 16 22 H 0.07 1.03 7.58 -51.93 -0.39 0.63 16 23 H 0.05 0.83 7.32 -51.93 -0.38 0.45 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 26 H 0.08 0.95 4.55 -51.93 -0.24 0.72 16 27 H 0.36 5.93 7.60 -39.29 -0.30 5.63 16 28 H 0.02 0.23 7.94 -51.93 -0.41 -0.18 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 7.36 -51.93 -0.38 0.25 16 31 H 0.03 0.72 5.38 -51.93 -0.28 0.44 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.12 1.62 6.10 -51.93 -0.32 1.30 16 35 H 0.12 2.20 6.29 -51.93 -0.33 1.87 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -32.31 299.83 -6.89 -39.20 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.84 Total: 5.81 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.62 Total: -3.96 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.37 Total: -49.49 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.31 -6.89 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692035420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.430 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds