Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 H 1.09001 * 109.47464 * 184.34809 * 3 2 1 5 5 N 1.46905 * 109.47344 * 64.34306 * 3 2 1 6 6 C 1.46899 * 110.99566 * 82.97735 * 5 3 2 7 7 C 1.50708 * 109.46690 * 304.34577 * 3 2 1 8 8 O 1.21288 * 119.99750 * 120.00382 * 7 3 2 9 9 N 1.34773 * 119.99869 * 299.99775 * 7 3 2 10 10 C 1.46501 * 119.99736 * 180.02562 * 9 7 3 11 11 C 1.50693 * 109.47233 * 89.99994 * 10 9 7 12 12 H 1.07996 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37887 * 119.99895 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99634 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99927 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47281 * 89.99699 * 15 13 11 17 17 H 1.48504 * 109.46753 * 210.00015 * 15 13 11 18 18 H 1.48504 * 109.47039 * 329.99734 * 15 13 11 19 19 C 1.46494 * 120.00210 * 0.02562 * 9 7 3 20 20 C 1.53001 * 117.50088 * 188.74627 * 19 9 7 21 21 C 1.52999 * 117.50380 * 120.08460 * 19 9 7 22 22 H 1.08997 * 109.47182 * 305.59070 * 1 2 3 23 23 H 1.09000 * 109.47119 * 65.59563 * 1 2 3 24 24 H 1.08998 * 109.47039 * 185.59104 * 1 2 3 25 25 H 1.09006 * 109.46782 * 119.99741 * 2 1 3 26 26 H 1.08993 * 109.47548 * 239.99692 * 2 1 3 27 27 H 1.00898 * 110.99790 * 206.92595 * 5 3 2 28 28 H 1.08994 * 109.47555 * 55.08649 * 6 5 3 29 29 H 1.09001 * 109.46996 * 175.09370 * 6 5 3 30 30 H 1.09005 * 109.46841 * 295.07979 * 6 5 3 31 31 H 1.09002 * 109.47215 * 210.00555 * 10 9 7 32 32 H 1.08998 * 109.46999 * 329.99666 * 10 9 7 33 33 H 0.97008 * 119.99890 * 180.02562 * 14 13 11 34 34 H 1.09003 * 115.54755 * 334.40869 * 19 9 7 35 35 H 1.09004 * 117.49637 * 359.97438 * 20 19 9 36 36 H 1.08997 * 117.50129 * 145.01444 * 20 19 9 37 37 H 1.09002 * 117.50296 * 214.97964 * 21 19 9 38 38 H 1.09004 * 117.49497 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 -0.0779 5 7 1.6379 2.1041 1.2485 6 6 2.5751 1.7911 2.3355 7 6 1.4517 2.1832 -1.1732 8 8 0.7650 3.1656 -0.9875 9 7 1.6886 1.7541 -2.4286 10 6 1.1171 2.4745 -3.5690 11 6 2.0792 3.5422 -4.0220 12 1 3.0223 3.6709 -3.5118 13 6 1.7560 4.3540 -5.0887 14 7 2.5959 5.2854 -5.4843 15 14 0.1250 4.1308 -5.9716 16 1 -0.9065 4.9843 -5.3293 17 1 0.2756 4.5232 -7.3959 18 1 -0.2904 2.7073 -5.8917 19 6 2.5175 0.5672 -2.6528 20 6 2.9196 0.2483 -4.0942 21 6 1.8760 -0.6154 -3.3814 22 1 -0.3633 0.5981 0.8357 23 1 -0.3633 0.4246 -0.9358 24 1 -0.3633 -1.0228 0.1001 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.5547 3.1012 1.1186 28 1 3.5876 2.0541 2.0294 29 1 2.3044 2.3615 3.2241 30 1 2.5285 0.7254 2.5599 31 1 0.9375 1.7765 -4.3867 32 1 0.1754 2.9362 -3.2722 33 1 2.3683 5.8568 -6.2345 34 1 3.2396 0.3430 -1.8676 35 1 2.5669 0.9214 -4.8757 36 1 3.9058 -0.1861 -4.2573 37 1 2.1761 -1.6177 -3.0757 38 1 0.8369 -0.5104 -3.6935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692035420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = -23.566683 kcal Electronic energy + Delta-G solvation = -18389.022741 eV Core-core repulsion = 15652.779555 eV Total energy + Delta-G solvation = -2736.243186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35140 -38.49196 -37.24592 -35.17862 -34.00007 -33.22589 -30.40757 -28.14410 -25.44315 -24.53186 -23.78294 -23.18807 -21.66192 -19.81942 -19.14168 -18.36072 -17.49328 -16.81845 -16.54238 -15.90341 -15.46729 -15.24023 -14.95423 -14.61635 -14.30311 -14.19436 -13.73392 -13.61744 -13.44523 -12.88569 -12.79768 -12.60747 -12.42197 -12.24145 -12.17338 -12.02450 -11.89625 -11.75333 -11.43562 -11.35329 -10.85916 -10.50165 -9.46103 -9.23294 -8.36520 -6.40567 1.27949 1.32099 1.39790 1.70107 2.12269 2.26987 2.97006 3.05114 3.26998 3.50746 3.89019 3.96222 4.03475 4.13888 4.20018 4.47597 4.54647 4.64851 4.67172 4.70984 4.81788 4.87508 4.94413 4.99413 5.07288 5.15036 5.20565 5.27844 5.38199 5.41679 5.52474 5.57116 5.95540 6.21709 6.27916 6.59837 6.68126 7.18515 7.36076 8.80373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.008109 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.035848 B = 3452.107494 C = 3866.649308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.077 3.923 4 H 0.075 0.925 5 N -0.687 5.687 6 C 0.029 3.971 7 C 0.505 3.495 8 O -0.586 6.586 9 N -0.570 5.570 10 C 0.228 3.772 11 C -0.525 4.525 12 H 0.028 0.972 13 C 0.014 3.986 14 N -0.943 5.943 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.241 1.241 19 C 0.053 3.947 20 C -0.189 4.189 21 C -0.168 4.168 22 H 0.052 0.948 23 H 0.019 0.981 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.342 0.658 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -16.442 9.820 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.036 4.036 4 H 0.093 0.907 5 N -0.320 5.320 6 C -0.120 4.120 7 C 0.294 3.706 8 O -0.466 6.466 9 N -0.299 5.299 10 C 0.105 3.895 11 C -0.564 4.564 12 H 0.047 0.953 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.764 3.236 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.165 1.165 19 C -0.051 4.051 20 C -0.226 4.226 21 C -0.206 4.206 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.161 0.839 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.673 -16.278 9.955 19.093 hybrid contribution 0.273 1.607 -1.024 1.925 sum -0.400 -14.672 8.931 17.181 Atomic orbital electron populations 1.21597 0.95951 1.01741 1.00432 1.21711 0.96629 0.91679 1.04396 1.21617 0.98179 0.96527 0.87316 0.90726 1.60376 1.50850 1.15945 1.04873 1.22366 0.92859 1.03163 0.93647 1.21166 0.80500 0.83997 0.84897 1.90623 1.41600 1.28978 1.85387 1.47385 1.49324 1.27529 1.05634 1.19246 0.93327 0.91593 0.85291 1.21427 1.03608 1.16639 1.14734 0.95342 1.25768 1.00686 0.94226 0.97712 1.70037 1.38363 1.21514 1.28387 0.85821 0.79388 0.80390 0.78043 1.20306 1.19718 1.16474 1.22035 0.98304 0.86855 0.97943 1.23387 1.01428 1.03090 0.94728 1.23521 0.98079 0.96306 1.02708 0.92857 0.96135 0.90847 0.88807 0.88899 0.83909 0.95733 0.90313 0.89957 0.93522 0.96884 0.92270 0.83322 0.90464 0.85924 0.84243 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.43 71.98 0.68 -2.93 16 2 C -0.11 -2.38 5.41 30.59 0.17 -2.21 16 3 C 0.08 2.26 1.93 44.17 0.09 2.34 16 4 H 0.08 2.01 7.18 -2.39 -0.02 1.99 16 5 N -0.69 -19.77 5.85 -518.51 -3.03 -22.81 16 6 C 0.03 0.57 10.52 127.69 1.34 1.92 16 7 C 0.51 20.98 5.74 87.66 0.50 21.48 16 8 O -0.59 -30.01 15.27 -3.05 -0.05 -30.06 16 9 N -0.57 -23.48 2.79 -802.15 -2.24 -25.72 16 10 C 0.23 11.30 3.53 85.63 0.30 11.60 16 11 C -0.53 -31.12 9.74 25.60 0.25 -30.87 16 12 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 13 C 0.01 0.85 5.47 84.66 0.46 1.31 16 14 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 15 Si 0.94 45.12 27.47 68.60 1.88 47.00 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 19 C 0.05 1.57 4.35 44.99 0.20 1.77 16 20 C -0.19 -5.57 9.72 30.62 0.30 -5.28 16 21 C -0.17 -3.95 9.39 30.62 0.29 -3.66 16 22 H 0.05 1.53 7.58 -2.39 -0.02 1.51 16 23 H 0.02 0.63 7.32 -2.39 -0.02 0.61 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.09 1.61 7.31 -2.38 -0.02 1.59 16 26 H 0.09 1.82 4.55 -2.39 -0.01 1.81 16 27 H 0.34 11.60 7.60 -89.70 -0.68 10.92 16 28 H 0.02 0.48 7.94 -2.39 -0.02 0.46 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.34 7.36 -2.38 -0.02 1.32 16 31 H 0.05 2.16 5.38 -2.39 -0.01 2.15 16 32 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 33 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 34 H 0.15 3.51 6.10 -2.39 -0.01 3.50 16 35 H 0.08 2.92 6.29 -2.38 -0.02 2.90 16 36 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.19 8.12 -2.38 -0.02 2.17 16 Total: -1.00 -75.40 299.83 1.75 -73.66 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.32 Total: 22.06 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.57 Total: -4.53 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.98 Total: -108.13 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -75.40 1.75 -73.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692035420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.088 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds