Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 N 1.46503 * 109.46795 * 119.99724 * 2 1 3 5 5 C 1.46495 * 120.00419 * 299.99734 * 4 2 1 6 6 C 1.50699 * 109.47291 * 270.00671 * 5 4 2 7 7 H 1.07995 * 119.99905 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47008 * 89.99966 * 10 8 6 12 12 H 1.48499 * 109.47240 * 210.00201 * 10 8 6 13 13 H 1.48500 * 109.47137 * 330.00401 * 10 8 6 14 14 C 1.34786 * 119.99748 * 120.00123 * 4 2 1 15 15 O 1.21285 * 119.99709 * 179.97438 * 14 4 2 16 16 C 1.50695 * 119.99989 * 359.97438 * 14 4 2 17 17 C 1.53776 * 113.61278 * 179.97438 * 16 14 4 18 18 C 1.53778 * 87.08414 * 219.93467 * 17 16 14 19 19 N 1.46905 * 113.61486 * 139.98223 * 18 17 16 20 20 C 1.53780 * 113.68874 * 82.46585 * 16 14 4 21 21 H 1.09003 * 109.47535 * 300.00031 * 1 2 3 22 22 H 1.08998 * 109.47134 * 60.00514 * 1 2 3 23 23 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47393 * 239.99554 * 2 1 3 25 25 H 1.08999 * 109.47398 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46696 * 300.00269 * 3 2 1 27 27 H 1.08997 * 109.47198 * 59.99435 * 3 2 1 28 28 H 1.09003 * 109.46934 * 30.00171 * 5 4 2 29 29 H 1.08999 * 109.47656 * 150.00029 * 5 4 2 30 30 H 0.97003 * 120.00250 * 179.97438 * 9 8 6 31 31 H 1.08991 * 112.85278 * 311.19839 * 16 14 4 32 32 H 1.09008 * 113.61416 * 105.39095 * 17 16 14 33 33 H 1.08997 * 113.61952 * 334.48943 * 17 16 14 34 34 H 1.09002 * 113.61610 * 270.80493 * 18 17 16 35 35 H 1.00901 * 110.99869 * 180.02562 * 19 18 17 36 36 H 1.00896 * 110.99543 * 303.95673 * 19 18 17 37 37 H 1.08998 * 113.61718 * 25.44212 * 20 16 14 38 38 H 1.09006 * 113.61690 * 254.53746 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5430 1.0358 2.3457 8 6 2.5810 1.4110 4.2140 9 7 3.4878 2.2763 4.6123 10 14 1.1278 1.0070 5.3159 11 1 1.4762 -0.1386 6.1944 12 1 0.7967 2.1889 6.1517 13 1 -0.0446 0.6492 4.4777 14 6 2.7931 -1.7865 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1567 -2.3017 -0.2961 17 6 4.0450 -3.5566 -0.2659 18 6 4.8172 -2.9425 -1.4454 19 7 6.2710 -3.1364 -1.3617 20 6 4.3488 -1.5699 -0.9351 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.6904 0.2975 2.4844 29 1 1.6237 -1.0225 3.2293 30 1 3.4017 2.7050 5.4782 31 1 2.2948 -2.3922 -0.9570 32 1 3.5140 -4.4736 -0.5218 33 1 4.6385 -3.6498 0.6435 34 1 4.4100 -3.2098 -2.4205 35 1 6.7376 -2.7188 -2.1530 36 1 6.6350 -2.7721 -0.4941 37 1 5.0254 -1.1201 -0.2085 38 1 4.0633 -0.8824 -1.7313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693658313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -20.124965 kcal Electronic energy + Delta-G solvation = -18246.421591 eV Core-core repulsion = 15510.327649 eV Total energy + Delta-G solvation = -2736.093942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10947 -37.78478 -35.92435 -32.76873 -31.84414 -30.97875 -28.29301 -26.78866 -25.53635 -24.85289 -22.15315 -21.24826 -19.70645 -17.93782 -17.04459 -16.82835 -16.01857 -15.44489 -14.74913 -14.40262 -14.08255 -13.70788 -13.57697 -13.01407 -12.76023 -12.50129 -12.34755 -12.13000 -11.86680 -11.71908 -11.48249 -11.08081 -10.99155 -10.87874 -10.72317 -10.48027 -10.41179 -10.29804 -10.08289 -9.45203 -8.97792 -8.58103 -8.56693 -7.67395 -6.07226 -4.04300 3.29125 3.35064 3.35301 3.37638 3.82224 4.40711 4.47541 4.65983 4.78104 4.94518 4.95178 5.15863 5.25393 5.35979 5.48850 5.57325 5.63953 5.76586 5.88726 5.95297 6.04488 6.09668 6.15853 6.24745 6.30799 6.48250 6.52935 6.80060 6.97501 7.00466 7.09836 7.40674 7.42812 7.64250 8.33078 8.49898 8.95826 9.04706 9.53967 11.06019 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.007556 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.061774 B = 3704.763302 C = 4043.176634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.155 4.155 4 N -0.586 5.586 5 C 0.214 3.786 6 C -0.520 4.520 7 H 0.075 0.925 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.517 3.483 15 O -0.541 6.541 16 C -0.136 4.136 17 C -0.109 4.109 18 C 0.071 3.929 19 N -0.840 5.840 20 C -0.157 4.157 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.338 0.662 36 H 0.346 0.654 37 H 0.087 0.913 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -5.766 -14.245 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.213 4.213 4 N -0.318 5.318 5 C 0.093 3.907 6 C -0.558 4.558 7 H 0.093 0.907 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.042 4.042 19 N -0.368 5.368 20 C -0.198 4.198 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.106 0.894 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.609 -6.724 -13.587 15.382 hybrid contribution -0.761 1.160 0.741 1.573 sum -3.371 -5.564 -12.845 14.399 Atomic orbital electron populations 1.22186 0.95852 1.01732 1.02407 1.21012 0.93740 0.94307 0.87928 1.22125 1.01656 0.95375 1.02188 1.48001 1.49384 1.26648 1.07729 1.19614 0.96275 0.95098 0.79688 1.21330 1.09173 1.22376 1.02943 0.90651 1.24853 0.96066 0.94798 0.97375 1.69892 1.34627 1.28465 1.20789 0.86898 0.83486 0.78208 0.81386 1.19997 1.21152 1.19148 1.20153 0.78582 0.80621 0.90293 1.90654 1.53224 1.58471 1.39544 1.22568 0.98289 0.98996 0.95969 1.22936 0.96906 0.95825 0.99048 1.22867 0.88203 0.94191 0.98890 1.58688 1.03808 1.66382 1.07918 1.23737 0.97663 0.98002 1.00358 0.91638 0.92064 0.92894 0.90383 0.92543 0.93350 0.90134 0.95216 0.94864 0.92664 0.87662 0.91173 0.88443 0.88090 0.84944 0.84069 0.89447 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.17 37.16 0.34 -1.93 16 2 C 0.13 2.14 3.15 -67.93 -0.21 1.92 16 3 C -0.16 -2.59 8.47 37.16 0.31 -2.28 16 4 N -0.59 -11.97 2.39 -167.48 -0.40 -12.37 16 5 C 0.21 5.22 3.66 -5.20 -0.02 5.20 16 6 C -0.52 -14.66 8.38 -34.44 -0.29 -14.95 16 7 H 0.08 2.32 7.87 -52.49 -0.41 1.91 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 10 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.52 10.56 7.20 -10.98 -0.08 10.48 16 15 O -0.54 -13.48 15.48 5.55 0.09 -13.39 16 16 C -0.14 -2.00 2.71 -90.96 -0.25 -2.24 16 17 C -0.11 -1.52 7.19 -25.92 -0.19 -1.70 16 18 C 0.07 0.81 5.01 -66.92 -0.34 0.47 16 19 N -0.84 -9.23 9.64 -3.99 -0.04 -9.27 16 20 C -0.16 -2.04 7.01 -25.94 -0.18 -2.22 16 21 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.04 5.40 -51.93 -0.28 0.76 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 28 H 0.03 0.70 5.48 -51.93 -0.28 0.41 16 29 H 0.03 0.88 6.85 -51.93 -0.36 0.53 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.11 1.28 7.30 -51.93 -0.38 0.90 16 32 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.10 1.62 7.43 -51.93 -0.39 1.24 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.34 2.99 9.08 -39.29 -0.36 2.63 16 36 H 0.35 3.98 8.84 -39.29 -0.35 3.63 16 37 H 0.09 1.34 7.99 -51.93 -0.41 0.93 16 38 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -32.95 302.17 -6.73 -39.68 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.05 Total: 5.90 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.99 Total: -5.30 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.34 Total: -48.45 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.95 -6.73 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693658313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.553 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds