Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 N 1.46503 * 109.46795 * 119.99724 * 2 1 3 5 5 C 1.46495 * 120.00419 * 299.99734 * 4 2 1 6 6 C 1.50699 * 109.47291 * 270.00671 * 5 4 2 7 7 H 1.07995 * 119.99905 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47008 * 89.99966 * 10 8 6 12 12 H 1.48499 * 109.47240 * 210.00201 * 10 8 6 13 13 H 1.48500 * 109.47137 * 330.00401 * 10 8 6 14 14 C 1.34786 * 119.99748 * 120.00123 * 4 2 1 15 15 O 1.21285 * 119.99709 * 179.97438 * 14 4 2 16 16 C 1.50695 * 119.99989 * 359.97438 * 14 4 2 17 17 C 1.53776 * 113.61278 * 179.97438 * 16 14 4 18 18 C 1.53778 * 87.08414 * 219.93467 * 17 16 14 19 19 N 1.46905 * 113.61486 * 139.98223 * 18 17 16 20 20 C 1.53780 * 113.68874 * 82.46585 * 16 14 4 21 21 H 1.09003 * 109.47535 * 300.00031 * 1 2 3 22 22 H 1.08998 * 109.47134 * 60.00514 * 1 2 3 23 23 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47393 * 239.99554 * 2 1 3 25 25 H 1.08999 * 109.47398 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46696 * 300.00269 * 3 2 1 27 27 H 1.08997 * 109.47198 * 59.99435 * 3 2 1 28 28 H 1.09003 * 109.46934 * 30.00171 * 5 4 2 29 29 H 1.08999 * 109.47656 * 150.00029 * 5 4 2 30 30 H 0.97003 * 120.00250 * 179.97438 * 9 8 6 31 31 H 1.08991 * 112.85278 * 311.19839 * 16 14 4 32 32 H 1.09008 * 113.61416 * 105.39095 * 17 16 14 33 33 H 1.08997 * 113.61952 * 334.48943 * 17 16 14 34 34 H 1.09002 * 113.61610 * 270.80493 * 18 17 16 35 35 H 1.00901 * 110.99869 * 180.02562 * 19 18 17 36 36 H 1.00896 * 110.99543 * 303.95673 * 19 18 17 37 37 H 1.08998 * 113.61718 * 25.44212 * 20 16 14 38 38 H 1.09006 * 113.61690 * 254.53746 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5430 1.0358 2.3457 8 6 2.5810 1.4110 4.2140 9 7 3.4878 2.2763 4.6123 10 14 1.1278 1.0070 5.3159 11 1 1.4762 -0.1386 6.1944 12 1 0.7967 2.1889 6.1517 13 1 -0.0446 0.6492 4.4777 14 6 2.7931 -1.7865 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1567 -2.3017 -0.2961 17 6 4.0450 -3.5566 -0.2659 18 6 4.8172 -2.9425 -1.4454 19 7 6.2710 -3.1364 -1.3617 20 6 4.3488 -1.5699 -0.9351 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.6904 0.2975 2.4844 29 1 1.6237 -1.0225 3.2293 30 1 3.4017 2.7050 5.4782 31 1 2.2948 -2.3922 -0.9570 32 1 3.5140 -4.4736 -0.5218 33 1 4.6385 -3.6498 0.6435 34 1 4.4100 -3.2098 -2.4205 35 1 6.7376 -2.7188 -2.1530 36 1 6.6350 -2.7721 -0.4941 37 1 5.0254 -1.1201 -0.2085 38 1 4.0633 -0.8824 -1.7313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693658313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -44.951298 kcal Electronic energy + Delta-G solvation = -18247.498141 eV Core-core repulsion = 15510.327649 eV Total energy + Delta-G solvation = -2737.170493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48183 -39.08213 -37.51248 -34.88898 -32.88978 -32.58204 -30.17454 -28.01544 -26.64897 -26.29593 -23.96022 -22.62044 -20.81599 -19.38781 -19.08338 -18.39882 -17.07658 -16.95538 -16.39560 -15.89082 -15.50380 -15.17614 -14.88618 -14.58863 -14.23237 -13.98658 -13.64375 -13.47251 -13.41591 -13.28820 -12.90975 -12.70297 -12.44319 -12.30547 -12.08931 -11.94599 -11.90669 -11.69786 -11.54502 -11.44432 -10.82115 -10.53983 -9.55600 -9.39574 -8.33272 -6.35341 1.28598 1.32719 1.40478 1.79365 2.28997 2.31734 3.00683 3.48345 3.51915 3.66580 3.88573 3.95181 4.00932 4.16576 4.27967 4.40842 4.60802 4.72212 4.76628 4.79908 4.85855 4.89674 4.92790 4.99652 5.04778 5.07744 5.10169 5.39538 5.43155 5.46660 5.57708 5.72288 6.19115 6.26686 6.61493 6.64713 6.77223 7.23501 7.46288 8.83408 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.007556 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.061774 B = 3704.763302 C = 4043.176634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 C -0.150 4.150 4 N -0.592 5.592 5 C 0.224 3.776 6 C -0.517 4.517 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.940 3.060 11 H -0.280 1.280 12 H -0.275 1.275 13 H -0.241 1.241 14 C 0.503 3.497 15 O -0.600 6.600 16 C -0.129 4.129 17 C -0.117 4.117 18 C 0.091 3.909 19 N -0.845 5.845 20 C -0.154 4.154 21 H 0.042 0.958 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.010 0.990 30 H 0.266 0.734 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.137 0.863 35 H 0.353 0.647 36 H 0.340 0.660 37 H 0.051 0.949 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -6.561 -17.202 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.208 4.208 4 N -0.322 5.322 5 C 0.101 3.899 6 C -0.556 4.556 7 H 0.051 0.949 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.205 1.205 12 H -0.200 1.200 13 H -0.164 1.164 14 C 0.293 3.707 15 O -0.482 6.482 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.021 4.021 19 N -0.374 5.374 20 C -0.195 4.195 21 H 0.061 0.939 22 H 0.116 0.884 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.714 -7.505 -16.610 18.827 hybrid contribution -0.007 1.429 1.614 2.156 sum -4.721 -6.076 -14.996 16.855 Atomic orbital electron populations 1.22161 0.93672 1.02690 1.03135 1.21423 0.95468 0.93431 0.87168 1.22056 1.00066 0.96332 1.02318 1.48154 1.49420 1.26964 1.07666 1.19235 0.95669 0.93149 0.81833 1.21496 1.08754 1.22893 1.02479 0.94939 1.25778 0.99253 0.94639 0.99086 1.70041 1.37023 1.30035 1.21567 0.85831 0.80548 0.77942 0.79364 1.20549 1.19982 1.16383 1.21311 0.77247 0.79993 0.92181 1.90618 1.55185 1.60270 1.42131 1.22719 1.00163 0.99351 0.92785 1.22949 0.97191 0.96585 0.98837 1.22845 0.88178 0.91930 0.99119 1.58676 1.03900 1.66501 1.08310 1.23718 0.96213 0.99448 1.00074 0.93861 0.88372 0.91819 0.86589 0.94970 0.89097 0.93999 0.93513 0.97227 0.92472 0.83553 0.89409 0.92245 0.84569 0.83274 0.84792 0.92985 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.17 71.98 0.66 -3.16 16 2 C 0.13 3.72 3.15 44.99 0.14 3.86 16 3 C -0.15 -4.83 8.47 71.98 0.61 -4.22 16 4 N -0.59 -24.05 2.39 -802.15 -1.91 -25.97 16 5 C 0.22 11.10 3.66 85.63 0.31 11.41 16 6 C -0.52 -30.52 8.38 25.60 0.21 -30.30 16 7 H 0.03 2.13 7.87 -2.91 -0.02 2.11 16 8 C 0.01 0.59 5.47 84.66 0.46 1.06 16 9 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 10 Si 0.94 45.47 27.47 68.60 1.88 47.35 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 14 C 0.50 20.69 7.20 87.65 0.63 21.32 16 15 O -0.60 -31.29 15.48 -3.04 -0.05 -31.34 16 16 C -0.13 -3.49 2.71 -11.02 -0.03 -3.52 16 17 C -0.12 -3.10 7.19 31.12 0.22 -2.88 16 18 C 0.09 1.81 5.01 45.43 0.23 2.04 16 19 N -0.85 -17.08 9.64 -166.53 -1.60 -18.68 16 20 C -0.15 -3.67 7.01 31.11 0.22 -3.45 16 21 H 0.04 1.23 6.66 -2.39 -0.02 1.22 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.12 2.53 5.40 -2.39 -0.01 2.51 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.04 1.66 6.92 -2.39 -0.02 1.64 16 28 H 0.05 2.16 5.48 -2.39 -0.01 2.15 16 29 H 0.01 0.53 6.85 -2.39 -0.02 0.51 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.15 2.80 7.30 -2.39 -0.02 2.78 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.06 2.05 7.43 -2.39 -0.02 2.03 16 34 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.35 5.37 9.08 -89.69 -0.81 4.55 16 36 H 0.34 7.79 8.84 -89.70 -0.79 7.00 16 37 H 0.05 1.62 7.99 -2.39 -0.02 1.60 16 38 H 0.10 1.81 8.07 -2.38 -0.02 1.79 16 Total: -1.00 -78.05 302.17 1.69 -76.36 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.60 Total: 20.23 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 3.67 Total: -7.84 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.22 Total: -104.75 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.34 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Total: -78.05 1.69 -76.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693658313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.404 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds