Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53780 * 113.61654 * 277.49898 * 16 14 13 18 18 C 1.53781 * 87.08199 * 220.01951 * 17 16 14 19 19 N 1.46897 * 113.61455 * 139.97869 * 18 17 16 20 20 C 1.46898 * 111.00046 * 107.50453 * 19 18 17 21 21 C 1.53786 * 113.61223 * 180.02562 * 16 14 13 22 22 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 23 23 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 28 28 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 29 29 H 1.09002 * 112.84687 * 48.80616 * 16 14 13 30 30 H 1.09000 * 113.61445 * 334.56423 * 17 16 14 31 31 H 1.08995 * 113.61258 * 105.47197 * 17 16 14 32 32 H 1.09001 * 113.61452 * 270.88731 * 18 17 16 33 33 H 1.00906 * 111.00215 * 231.45518 * 19 18 17 34 34 H 1.08999 * 109.47511 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47019 * 300.00186 * 20 19 18 36 36 H 1.09003 * 109.47230 * 59.99710 * 20 19 18 37 37 H 1.09001 * 113.61132 * 254.52918 * 21 16 14 38 38 H 1.08999 * 113.61136 * 25.43346 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 0.5883 4.7691 -2.8121 18 6 -0.7675 5.1192 -3.4478 19 7 -1.3031 6.4165 -3.0144 20 6 -1.2093 7.4111 -4.0914 21 6 -1.3493 3.9240 -2.6752 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8116 0.4042 0.4384 28 1 2.2954 2.1150 -1.9977 29 1 0.2753 2.7090 -3.5592 30 1 0.7597 5.2571 -1.8527 31 1 1.4306 4.8709 -3.4964 32 1 -0.7883 4.9917 -4.5301 33 1 -2.2538 6.3248 -2.6888 34 1 -1.6122 8.3624 -3.7437 35 1 -0.1650 7.5414 -4.3756 36 1 -1.7805 7.0677 -4.9539 37 1 -2.0717 3.3434 -3.2489 38 1 -1.7073 4.1809 -1.6782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703535366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = -27.908618 kcal Electronic energy + Delta-G solvation = -17714.868826 eV Core-core repulsion = 14978.437360 eV Total energy + Delta-G solvation = -2736.431467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01563 -37.91872 -35.15166 -33.98152 -32.38506 -31.30998 -27.55864 -26.27081 -25.61777 -23.90791 -22.29060 -20.65526 -19.53823 -19.25141 -17.80245 -16.66210 -15.77328 -15.45333 -15.23351 -14.75375 -14.18165 -13.68423 -13.42582 -13.15496 -12.54756 -12.48018 -12.40227 -12.32241 -12.03204 -11.76427 -11.52123 -11.04901 -10.85785 -10.71693 -10.61855 -10.38598 -10.34895 -9.82487 -9.75060 -9.15935 -8.97561 -8.60327 -8.22163 -8.00083 -6.58229 -4.16810 3.31269 3.43803 3.48567 3.64446 3.95236 4.28166 4.47091 4.55715 4.62622 4.88734 4.93825 5.11055 5.20007 5.24117 5.44510 5.61181 5.68206 5.75924 5.88049 6.06753 6.11423 6.13022 6.15899 6.31833 6.33226 6.74479 6.83288 6.95777 7.02143 7.10312 7.19193 7.41576 7.50634 7.74326 8.27745 8.58416 8.75501 9.08869 9.47894 10.79432 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.005713 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.066767 B = 4899.644212 C = 5153.866740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.249 3.751 4 H 0.039 0.961 5 C -0.628 4.628 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.888 5.888 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.106 4.106 18 C 0.055 3.945 19 N -0.682 5.682 20 C 0.027 3.973 21 C -0.117 4.117 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 7.444 -10.850 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.057 0.943 5 C -0.665 4.665 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.519 5.519 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.348 5.348 14 C 0.298 3.702 15 O -0.431 6.431 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.055 4.055 19 N -0.313 5.313 20 C -0.123 4.123 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.507 7.321 -8.247 15.938 hybrid contribution -0.377 -0.051 -2.759 2.785 sum -11.884 7.270 -11.006 17.754 Atomic orbital electron populations 1.21891 0.97458 0.98730 1.01990 1.22223 0.93649 0.99839 1.01257 1.18984 0.95682 0.88412 0.82333 0.94294 1.21992 0.89832 1.49888 1.04798 0.92000 1.25600 0.96597 0.91673 1.02081 1.70870 1.13946 1.36593 1.30516 0.84224 0.76022 0.77646 0.76452 1.20896 1.20673 1.19958 1.46254 1.14669 1.55867 1.17992 1.20167 0.82517 0.78650 0.88882 1.90636 1.50993 1.59972 1.41469 1.22590 0.98880 0.97084 0.97595 1.22950 0.96343 0.92973 1.02246 1.23070 0.97154 0.88031 0.97229 1.60497 1.26713 1.07732 1.36332 1.22237 1.01707 0.95775 0.92548 1.23077 0.95216 0.95303 1.01971 0.93049 0.93238 0.95225 0.93279 0.91974 0.91923 0.77591 0.87704 0.88720 0.91280 0.90924 0.83867 0.91607 0.91713 0.96214 0.91502 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.53 37.16 0.32 -2.65 16 2 C -0.13 -2.98 5.37 -26.73 -0.14 -3.12 16 3 C 0.25 6.04 1.84 -69.09 -0.13 5.91 16 4 H 0.04 1.04 6.12 -51.93 -0.32 0.72 16 5 C -0.63 -17.08 8.92 -34.44 -0.31 -17.38 16 6 H 0.06 1.76 7.96 -52.49 -0.42 1.34 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -26.35 13.70 55.43 0.76 -25.59 16 9 Si 1.03 25.33 26.56 -169.99 -4.51 20.82 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.41 6.34 56.52 0.36 -6.05 16 13 N -0.70 -14.25 5.03 -54.93 -0.28 -14.52 16 14 C 0.51 9.70 5.96 -10.98 -0.07 9.64 16 15 O -0.55 -12.17 13.04 5.55 0.07 -12.10 16 16 C -0.14 -1.94 4.15 -90.96 -0.38 -2.32 16 17 C -0.11 -1.38 7.43 -25.92 -0.19 -1.57 16 18 C 0.06 0.61 4.14 -66.92 -0.28 0.33 16 19 N -0.68 -7.30 6.91 -113.16 -0.78 -8.08 16 20 C 0.03 0.23 10.54 60.06 0.63 0.87 16 21 C -0.12 -1.47 6.97 -25.93 -0.18 -1.65 16 22 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 23 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.49 5.77 -51.93 -0.30 1.19 16 27 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 28 H 0.39 7.17 8.53 -40.82 -0.35 6.82 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.34 3.28 8.63 -39.29 -0.34 2.94 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.15 8.13 -51.93 -0.42 -0.27 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.51 7.43 -51.93 -0.39 1.12 16 LS Contribution 302.57 15.07 4.56 4.56 Total: -1.00 -30.65 302.57 -7.21 -37.86 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.22 Total: 7.74 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.81 Total: -10.67 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.30 Total: -48.20 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.10 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.51 Total: 20.82 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.65 -7.21 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds