Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53780 * 113.61654 * 277.49898 * 16 14 13 18 18 C 1.53781 * 87.08199 * 220.01951 * 17 16 14 19 19 N 1.46897 * 113.61455 * 139.97869 * 18 17 16 20 20 C 1.46898 * 111.00046 * 107.50453 * 19 18 17 21 21 C 1.53786 * 113.61223 * 180.02562 * 16 14 13 22 22 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 23 23 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 28 28 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 29 29 H 1.09002 * 112.84687 * 48.80616 * 16 14 13 30 30 H 1.09000 * 113.61445 * 334.56423 * 17 16 14 31 31 H 1.08995 * 113.61258 * 105.47197 * 17 16 14 32 32 H 1.09001 * 113.61452 * 270.88731 * 18 17 16 33 33 H 1.00906 * 111.00215 * 231.45518 * 19 18 17 34 34 H 1.08999 * 109.47511 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47019 * 300.00186 * 20 19 18 36 36 H 1.09003 * 109.47230 * 59.99710 * 20 19 18 37 37 H 1.09001 * 113.61132 * 254.52918 * 21 16 14 38 38 H 1.08999 * 113.61136 * 25.43346 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 0.5883 4.7691 -2.8121 18 6 -0.7675 5.1192 -3.4478 19 7 -1.3031 6.4165 -3.0144 20 6 -1.2093 7.4111 -4.0914 21 6 -1.3493 3.9240 -2.6752 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8116 0.4042 0.4384 28 1 2.2954 2.1150 -1.9977 29 1 0.2753 2.7090 -3.5592 30 1 0.7597 5.2571 -1.8527 31 1 1.4306 4.8709 -3.4964 32 1 -0.7883 4.9917 -4.5301 33 1 -2.2538 6.3248 -2.6888 34 1 -1.6122 8.3624 -3.7437 35 1 -0.1650 7.5414 -4.3756 36 1 -1.7805 7.0677 -4.9539 37 1 -2.0717 3.3434 -3.2489 38 1 -1.7073 4.1809 -1.6782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703535366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = -50.835804 kcal Electronic energy + Delta-G solvation = -17715.863024 eV Core-core repulsion = 14978.437360 eV Total energy + Delta-G solvation = -2737.425664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32296 -39.22445 -36.91505 -34.90776 -34.44579 -33.02550 -29.34028 -27.37591 -26.63324 -25.02535 -24.13352 -22.12597 -21.19479 -20.51872 -19.67306 -18.10328 -17.19239 -16.73987 -16.27185 -16.05467 -15.66002 -15.30953 -14.71417 -14.55364 -14.42947 -14.06827 -13.94413 -13.54929 -13.38699 -12.87048 -12.69498 -12.66213 -12.50686 -12.32343 -12.02622 -11.77963 -11.71789 -11.56548 -11.32647 -11.22484 -10.52125 -10.40854 -9.74355 -9.37660 -8.81097 -6.40161 1.45533 1.47883 1.69341 1.83577 2.41730 2.56517 2.92930 3.35982 3.58071 3.59932 3.85609 3.99113 4.24663 4.31492 4.40564 4.47942 4.56341 4.58255 4.67578 4.79968 4.86702 4.88976 5.02182 5.06017 5.08868 5.17166 5.23407 5.30527 5.35014 5.55375 5.73425 5.73974 6.03507 6.16860 6.46188 6.55794 6.94223 7.28120 7.53815 8.55315 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.005713 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.066767 B = 4899.644212 C = 5153.866740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.253 3.747 4 H 0.017 0.983 5 C -0.626 4.626 6 H 0.041 0.959 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.062 2.938 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.256 1.256 13 N -0.704 5.704 14 C 0.509 3.491 15 O -0.584 6.584 16 C -0.134 4.134 17 C -0.110 4.110 18 C 0.072 3.928 19 N -0.701 5.701 20 C 0.028 3.972 21 C -0.115 4.115 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.401 0.599 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.432 7.747 -12.383 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.148 3.852 4 H 0.034 0.966 5 C -0.664 4.664 6 H 0.059 0.941 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.885 3.115 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.181 1.181 13 N -0.352 5.352 14 C 0.297 3.703 15 O -0.466 6.466 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.038 4.038 19 N -0.333 5.333 20 C -0.122 4.122 21 C -0.153 4.153 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.235 0.765 29 H 0.154 0.846 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.242 7.640 -9.815 18.167 hybrid contribution 0.176 -0.080 -2.330 2.338 sum -13.066 7.560 -12.145 19.375 Atomic orbital electron populations 1.21760 0.95538 1.00254 1.01388 1.22108 0.95268 0.98414 1.00834 1.18685 0.93409 0.89502 0.83578 0.96559 1.22164 0.91545 1.48680 1.03969 0.94054 1.26631 0.96721 0.91282 1.04898 1.70957 1.15027 1.38904 1.30032 0.83777 0.75828 0.78176 0.73733 1.20446 1.20204 1.18091 1.46137 1.15791 1.56240 1.16997 1.21038 0.81289 0.77626 0.90348 1.90619 1.51763 1.60966 1.43216 1.22701 1.00047 0.97308 0.95506 1.22946 0.98437 0.92086 1.01412 1.22951 0.95059 0.87689 0.98069 1.60438 1.27317 1.07952 1.37554 1.22270 1.01826 0.95620 0.92457 1.23028 0.94771 0.96224 1.01297 0.94456 0.93025 0.92569 0.92788 0.93312 0.92895 0.76458 0.84608 0.91758 0.89650 0.88444 0.83190 0.90813 0.92046 0.94778 0.89384 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.53 71.98 0.61 -4.63 16 2 C -0.13 -5.68 5.37 30.60 0.16 -5.52 16 3 C 0.25 12.23 1.84 44.25 0.08 12.31 16 4 H 0.02 0.88 6.12 -2.39 -0.01 0.87 16 5 C -0.63 -34.48 8.92 25.60 0.23 -34.25 16 6 H 0.04 2.40 7.96 -2.91 -0.02 2.37 16 7 C 0.01 0.44 5.15 84.66 0.44 0.87 16 8 N -0.92 -55.24 13.70 21.45 0.29 -54.95 16 9 Si 1.06 51.29 26.56 68.60 1.82 53.11 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -11.57 6.34 99.48 0.63 -10.94 16 13 N -0.70 -28.18 5.03 -446.10 -2.24 -30.43 16 14 C 0.51 18.77 5.96 87.66 0.52 19.30 16 15 O -0.58 -25.60 13.04 -3.04 -0.04 -25.64 16 16 C -0.13 -3.41 4.15 -11.01 -0.05 -3.46 16 17 C -0.11 -2.65 7.43 31.12 0.23 -2.42 16 18 C 0.07 1.39 4.14 45.43 0.19 1.58 16 19 N -0.70 -13.50 6.91 -511.93 -3.54 -17.04 16 20 C 0.03 0.40 10.54 127.69 1.35 1.75 16 21 C -0.11 -2.60 6.97 31.11 0.22 -2.39 16 22 H 0.04 1.56 7.89 -2.39 -0.02 1.55 16 23 H 0.05 2.01 5.63 -2.39 -0.01 2.00 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.05 2.29 5.77 -2.39 -0.01 2.27 16 27 H 0.26 15.75 8.73 -92.71 -0.81 14.94 16 28 H 0.40 14.38 8.53 -92.71 -0.79 13.59 16 29 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 33 H 0.35 6.00 8.63 -89.69 -0.77 5.23 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.03 0.41 8.13 -2.39 -0.02 0.39 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.20 7.43 -2.39 -0.02 2.18 16 Total: -1.00 -66.44 302.57 -0.35 -66.78 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.62 Total: 25.02 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 3.98 Total: -16.85 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -5.49 Total: -102.42 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.82 Total: 53.11 kcal Total: -66.44 -0.35 -66.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.946 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds