Wall clock time and date at job start Mon Mar 30 2020 04:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 115.55330 * 2 1 4 4 C 1.53006 * 117.49761 * 214.32594 * 2 1 3 5 5 C 1.52996 * 60.00065 * 252.49190 * 4 2 1 6 6 C 1.53001 * 117.49918 * 252.50846 * 5 4 2 7 7 N 1.46501 * 117.50115 * 107.49309 * 5 4 2 8 8 C 1.34784 * 120.00078 * 225.02461 * 7 5 4 9 9 O 1.21281 * 119.99710 * 4.72571 * 8 7 5 10 10 C 1.50689 * 119.99869 * 184.73093 * 8 7 5 11 11 H 1.09008 * 109.47582 * 319.99671 * 10 8 7 12 12 N 1.46901 * 109.46987 * 199.99749 * 10 8 7 13 13 C 1.52997 * 109.47576 * 79.99606 * 10 8 7 14 14 C 1.52997 * 109.47365 * 184.99800 * 13 10 8 15 15 C 1.50701 * 109.47022 * 180.02562 * 14 13 10 16 16 H 1.07996 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99566 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46839 * 59.99743 * 19 17 15 21 21 H 1.48498 * 109.47211 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47116 * 300.00276 * 19 17 15 23 23 H 1.08993 * 109.47753 * 154.41799 * 1 2 3 24 24 H 1.09001 * 109.47206 * 274.42228 * 1 2 3 25 25 H 1.09006 * 109.46547 * 34.41468 * 1 2 3 26 26 H 1.09004 * 117.49548 * 359.97438 * 4 2 1 27 27 H 1.09000 * 117.49643 * 144.97859 * 4 2 1 28 28 H 1.08999 * 109.47182 * 126.82874 * 6 5 4 29 29 H 1.08994 * 109.47190 * 246.83183 * 6 5 4 30 30 H 1.09006 * 109.47058 * 6.83319 * 6 5 4 31 31 H 0.96995 * 120.00302 * 45.01991 * 7 5 4 32 32 H 1.00894 * 111.00115 * 299.99634 * 12 10 8 33 33 H 1.00907 * 110.99869 * 63.95607 * 12 10 8 34 34 H 1.08998 * 109.46941 * 305.00150 * 13 10 8 35 35 H 1.09008 * 109.46715 * 64.99912 * 13 10 8 36 36 H 1.08998 * 109.47377 * 300.00083 * 14 13 10 37 37 H 1.08995 * 109.47216 * 60.00039 * 14 13 10 38 38 H 0.97003 * 119.99608 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7653 5 6 2.2368 -1.1210 0.7646 6 6 3.5495 -0.7759 1.4708 7 7 1.3968 -2.1125 1.4412 8 6 0.6270 -1.7442 2.4844 9 8 0.5635 -0.5773 2.8090 10 6 -0.1547 -2.7822 3.2475 11 1 -0.5721 -3.5084 2.5498 12 7 -1.2446 -2.1298 3.9854 13 6 0.7724 -3.4965 4.2329 14 6 0.0105 -4.6327 4.9180 15 6 0.9236 -5.3358 5.8891 16 1 1.9452 -5.0056 6.0057 17 6 0.4550 -6.4014 6.6281 18 7 -0.7890 -6.8039 6.4857 19 14 1.5869 -7.2734 7.8313 20 1 2.0598 -6.3072 8.8550 21 1 0.8478 -8.3770 8.4954 22 1 2.7533 -7.8296 7.0994 23 1 -0.3634 -0.9268 -0.4437 24 1 -0.3634 0.0792 1.0246 25 1 -0.3632 0.8479 -0.5809 26 1 1.6111 -1.8584 -1.2684 27 1 3.1711 -0.8747 -1.2691 28 1 3.3770 0.0291 2.1851 29 1 3.9211 -1.6551 1.9970 30 1 4.2856 -0.4557 0.7333 31 1 1.3947 -3.0339 1.1384 32 1 -0.8833 -1.4517 4.6393 33 1 -1.9063 -1.7054 3.3528 34 1 1.6283 -3.9050 3.6957 35 1 1.1198 -2.7871 4.9842 36 1 -0.8454 -4.2242 5.4552 37 1 -0.3369 -5.3419 4.1668 38 1 -1.1188 -7.5533 7.0058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704015750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:32 Heat of formation + Delta-G solvation = -31.673337 kcal Electronic energy + Delta-G solvation = -17528.419062 eV Core-core repulsion = 14791.824345 eV Total energy + Delta-G solvation = -2736.594717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20463 -37.86149 -35.08306 -32.98566 -32.74336 -30.08806 -29.94552 -27.15713 -26.41716 -23.85524 -21.43691 -21.07355 -19.92161 -19.27503 -17.06124 -16.27522 -15.93810 -15.57426 -15.23118 -14.74602 -14.34057 -13.96845 -13.45533 -13.13924 -12.74704 -12.58806 -12.42509 -12.30079 -12.23452 -11.98823 -11.54817 -11.44010 -10.87129 -10.66291 -10.56204 -10.49425 -10.09829 -9.84855 -9.75605 -9.35247 -9.00016 -8.90015 -8.33024 -8.18288 -5.93011 -3.95171 2.81506 3.18870 3.36584 3.41118 3.43588 3.52913 4.45393 4.50707 4.61536 4.80509 4.91475 5.12051 5.20920 5.42438 5.47660 5.53526 5.54774 5.59059 5.67430 5.70962 5.80865 5.85383 5.99749 6.11076 6.25857 6.45137 6.62794 6.68399 7.10029 7.40630 7.65852 7.76738 7.81190 7.97126 8.14050 8.40761 8.49409 9.12643 9.67873 11.17892 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.004915 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.836135 B = 5695.303105 C = 6097.472977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.100 3.900 6 C -0.121 4.121 7 N -0.701 5.701 8 C 0.488 3.512 9 O -0.544 6.544 10 C 0.079 3.921 11 H 0.095 0.905 12 N -0.807 5.807 13 C -0.094 4.094 14 C 0.031 3.969 15 C -0.523 4.523 16 H 0.051 0.949 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.403 0.597 32 H 0.348 0.652 33 H 0.333 0.667 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.012 0.988 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 11.001 -14.496 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 H 0.123 0.877 4 C -0.213 4.213 5 C 0.012 3.988 6 C -0.180 4.180 7 N -0.353 5.353 8 C 0.274 3.726 9 O -0.420 6.420 10 C -0.037 4.037 11 H 0.113 0.887 12 N -0.334 5.334 13 C -0.132 4.132 14 C -0.006 4.006 15 C -0.561 4.561 16 H 0.069 0.931 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.221 10.962 -13.871 18.176 hybrid contribution 1.048 -0.139 -0.023 1.057 sum 5.268 10.822 -13.894 18.382 Atomic orbital electron populations 1.21431 0.92593 1.01017 1.03303 1.22601 0.95988 0.94333 1.02460 0.87682 1.23570 1.03005 1.02042 0.92696 1.20705 0.93270 0.94781 0.90063 1.21525 0.93633 1.02377 1.00445 1.45552 1.44574 1.11761 1.33425 1.22713 0.79128 0.91336 0.79442 1.90614 1.64719 1.19665 1.67047 1.21829 0.92291 0.93833 0.95782 0.88668 1.58995 1.15419 1.38810 1.20226 1.21640 0.96530 0.98930 0.96131 1.19010 0.95733 0.90890 0.94933 1.21245 0.97656 1.14604 1.22639 0.93067 1.24987 0.94996 0.97191 0.97097 1.69965 1.14754 1.27129 1.41367 0.86714 0.80814 0.79265 0.81500 1.20313 1.21321 1.20383 0.93118 0.90484 0.92711 0.88460 0.88103 0.91640 0.91599 0.91758 0.76168 0.83830 0.85545 0.92867 0.92905 0.94684 0.96927 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.13 -1.48 5.84 -90.62 -0.53 -2.01 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.18 -1.60 9.75 -26.73 -0.26 -1.86 16 5 C 0.10 1.15 2.25 -131.82 -0.30 0.85 16 6 C -0.12 -1.36 10.05 37.16 0.37 -0.99 16 7 N -0.70 -8.85 5.07 -47.61 -0.24 -9.10 16 8 C 0.49 7.49 6.12 -10.99 -0.07 7.43 16 9 O -0.54 -9.57 13.93 5.56 0.08 -9.49 16 10 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 11 H 0.10 1.50 8.14 -51.92 -0.42 1.07 16 12 N -0.81 -13.53 8.44 -5.66 -0.05 -13.58 16 13 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 24 H 0.08 1.08 5.56 -51.93 -0.29 0.79 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 27 H 0.10 0.76 8.04 -51.93 -0.42 0.34 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 31 H 0.40 4.40 8.83 -40.82 -0.36 4.04 16 32 H 0.35 5.94 8.58 -39.30 -0.34 5.60 16 33 H 0.33 4.83 9.06 -39.29 -0.36 4.48 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 36 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -31.69 315.00 -7.40 -39.10 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.32 Total: 9.33 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.33 Total: -11.52 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.45 Total: -48.92 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.69 -7.40 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704015750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.423 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds