Wall clock time and date at job start Mon Mar 30 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.55145 * 2 1 4 4 C 1.53005 * 117.51209 * 214.29813 * 2 1 3 5 5 C 1.53001 * 117.49684 * 145.67115 * 2 1 3 6 6 C 1.52994 * 117.49965 * 215.02084 * 5 2 1 7 7 N 1.46497 * 117.49987 * 0.02562 * 5 2 1 8 8 C 1.34778 * 119.99754 * 294.15813 * 7 5 2 9 9 O 1.21281 * 119.99844 * 354.86318 * 8 7 5 10 10 C 1.50702 * 120.00240 * 174.85966 * 8 7 5 11 11 H 1.09006 * 109.46777 * 40.00352 * 10 8 7 12 12 N 1.46897 * 109.47081 * 160.00099 * 10 8 7 13 13 C 1.52992 * 109.47067 * 280.00252 * 10 8 7 14 14 C 1.53002 * 109.46939 * 175.00044 * 13 10 8 15 15 C 1.50707 * 109.47244 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99550 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47079 * 90.00054 * 19 17 15 21 21 H 1.48496 * 109.47200 * 210.00251 * 19 17 15 22 22 H 1.48503 * 109.47312 * 330.00082 * 19 17 15 23 23 H 1.08999 * 109.47136 * 274.33404 * 1 2 3 24 24 H 1.08997 * 109.47026 * 34.32830 * 1 2 3 25 25 H 1.08994 * 109.47754 * 154.33045 * 1 2 3 26 26 H 1.09007 * 117.49717 * 145.02904 * 4 2 1 27 27 H 1.08994 * 117.50005 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.47272 * 200.73768 * 6 5 2 29 29 H 1.09002 * 109.47151 * 320.73774 * 6 5 2 30 30 H 1.09004 * 109.47247 * 80.73467 * 6 5 2 31 31 H 0.97000 * 120.00743 * 114.16399 * 7 5 2 32 32 H 1.00910 * 111.00126 * 296.04759 * 12 10 8 33 33 H 1.00897 * 111.00473 * 59.99858 * 12 10 8 34 34 H 1.09004 * 109.47079 * 294.99443 * 13 10 8 35 35 H 1.08996 * 109.47740 * 55.00107 * 13 10 8 36 36 H 1.09005 * 109.47223 * 299.99825 * 14 13 10 37 37 H 1.08997 * 109.47556 * 59.99767 * 14 13 10 38 38 H 0.97004 * 120.00214 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1211 -0.7647 5 6 2.2364 -1.1208 0.7654 6 6 3.5484 -0.7753 1.4725 7 7 1.3961 -2.1121 1.4416 8 6 0.6178 -1.7414 2.4777 9 8 0.6821 -0.6101 2.9100 10 6 -0.3323 -2.7325 3.0989 11 1 0.1491 -3.7086 3.1592 12 7 -0.6965 -2.2819 4.4488 13 6 -1.5933 -2.8381 2.2389 14 6 -2.5028 -3.9333 2.7997 15 6 -3.7446 -4.0377 1.9523 16 1 -3.8725 -3.3877 1.0993 17 6 -4.7174 -4.9631 2.2659 18 7 -4.5618 -5.7543 3.3047 19 14 -6.2570 -5.0921 1.2159 20 1 -6.0297 -6.0704 0.1221 21 1 -7.3934 -5.5455 2.0573 22 1 -6.5718 -3.7628 0.6335 23 1 -0.3633 0.0777 1.0247 24 1 -0.3633 0.8486 -0.5795 25 1 -0.3634 -0.9262 -0.4451 26 1 3.1720 -0.8752 -1.2678 27 1 1.6118 -1.8585 -1.2682 28 1 4.1165 -1.6884 1.6508 29 1 4.1321 -0.1007 0.8461 30 1 3.3314 -0.2907 2.4245 31 1 1.3997 -3.0352 1.1439 32 1 0.1103 -2.2659 5.0546 33 1 -1.1448 -1.3785 4.4198 34 1 -2.1222 -1.8851 2.2511 35 1 -1.3150 -3.0861 1.2147 36 1 -1.9739 -4.8863 2.7876 37 1 -2.7812 -3.6853 3.8239 38 1 -5.2460 -6.4057 3.5252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704015758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:36 Heat of formation + Delta-G solvation = -33.124256 kcal Electronic energy + Delta-G solvation = -17654.963847 eV Core-core repulsion = 14918.306213 eV Total energy + Delta-G solvation = -2736.657634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18925 -37.83607 -35.08885 -32.95361 -32.74063 -30.16049 -29.87353 -27.11702 -26.40055 -23.86304 -21.36433 -21.09929 -19.86976 -19.30603 -17.06832 -16.19291 -15.92043 -15.52789 -15.39083 -14.49303 -14.23800 -14.15718 -13.46764 -13.16654 -12.71907 -12.55279 -12.39165 -12.26096 -12.17996 -11.99414 -11.52354 -11.42082 -10.89416 -10.65739 -10.54417 -10.47030 -10.09459 -9.80091 -9.77105 -9.35819 -8.99214 -8.91104 -8.33440 -8.18478 -5.93609 -3.95757 2.82602 3.19501 3.34528 3.41170 3.44530 3.56857 4.47691 4.50404 4.66369 4.81819 4.93618 5.11888 5.29566 5.42021 5.49726 5.52071 5.55477 5.61268 5.63856 5.80023 5.84989 5.92797 6.05261 6.09252 6.38237 6.44359 6.62828 6.68052 7.09452 7.40928 7.66215 7.76419 7.81288 7.96628 8.13511 8.40952 8.48765 9.12259 9.67433 11.17329 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.005415 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.054529 B = 5169.799896 C = 5666.182852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.097 3.903 6 C -0.118 4.118 7 N -0.701 5.701 8 C 0.488 3.512 9 O -0.545 6.545 10 C 0.078 3.922 11 H 0.096 0.904 12 N -0.807 5.807 13 C -0.093 4.093 14 C 0.031 3.969 15 C -0.522 4.522 16 H 0.051 0.949 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.333 0.667 33 H 0.347 0.653 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.035 0.965 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 8.064 -5.643 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 H 0.123 0.877 4 C -0.213 4.213 5 C 0.009 3.991 6 C -0.177 4.177 7 N -0.353 5.353 8 C 0.274 3.726 9 O -0.422 6.422 10 C -0.038 4.038 11 H 0.114 0.886 12 N -0.335 5.335 13 C -0.131 4.131 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.238 0.762 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.577 8.089 -5.183 17.458 hybrid contribution -0.140 0.174 -1.004 1.028 sum 14.438 8.263 -6.186 17.748 Atomic orbital electron populations 1.21395 0.92184 1.01663 1.03115 1.22628 0.96204 0.94215 1.02319 0.87726 1.23537 1.02949 1.02194 0.92592 1.20681 0.93242 0.95024 0.90147 1.21463 0.93854 1.01364 1.01002 1.45523 1.44004 1.11647 1.34113 1.22708 0.80196 0.90429 0.79233 1.90630 1.68081 1.21463 1.62024 1.21840 0.95457 0.96108 0.90410 0.88641 1.58999 1.31067 1.35510 1.07882 1.21631 0.92920 1.02092 0.96463 1.19020 0.92618 0.91671 0.97313 1.21276 1.03755 1.18567 1.12446 0.93025 1.24983 0.98234 0.95857 0.95204 1.69971 1.34610 1.21871 1.26742 0.86659 0.83166 0.78234 0.80307 1.20789 1.21247 1.19979 0.90969 0.92503 0.92480 0.88167 0.88200 0.92168 0.91755 0.91533 0.76188 0.85495 0.83863 0.92921 0.92937 0.96933 0.94673 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.13 -1.58 5.92 -90.62 -0.54 -2.12 16 3 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.18 -1.70 9.79 -26.73 -0.26 -1.96 16 5 C 0.10 1.12 2.18 -131.82 -0.29 0.83 16 6 C -0.12 -1.23 9.97 37.15 0.37 -0.86 16 7 N -0.70 -8.87 5.07 -47.61 -0.24 -9.11 16 8 C 0.49 7.53 5.77 -10.98 -0.06 7.46 16 9 O -0.55 -9.68 14.62 5.56 0.08 -9.60 16 10 C 0.08 1.29 3.15 -68.87 -0.22 1.08 16 11 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 12 N -0.81 -13.60 8.44 -5.66 -0.05 -13.64 16 13 C -0.09 -1.86 4.78 -26.73 -0.13 -1.98 16 14 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.07 1.16 5.91 -51.93 -0.31 0.86 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.40 4.40 8.83 -40.82 -0.36 4.04 16 32 H 0.33 4.89 9.06 -39.29 -0.36 4.54 16 33 H 0.35 5.95 8.58 -39.29 -0.34 5.61 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -31.68 315.95 -7.42 -39.10 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.36 Total: 9.72 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.33 Total: -11.73 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.45 Total: -48.96 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.68 -7.42 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704015758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.975 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds