Wall clock time and date at job start Mon Mar 30 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.55145 * 2 1 4 4 C 1.53005 * 117.51209 * 214.29813 * 2 1 3 5 5 C 1.53001 * 117.49684 * 145.67115 * 2 1 3 6 6 C 1.52994 * 117.49965 * 215.02084 * 5 2 1 7 7 N 1.46497 * 117.49987 * 0.02562 * 5 2 1 8 8 C 1.34778 * 119.99754 * 294.15813 * 7 5 2 9 9 O 1.21281 * 119.99844 * 354.86318 * 8 7 5 10 10 C 1.50702 * 120.00240 * 174.85966 * 8 7 5 11 11 H 1.09006 * 109.46777 * 40.00352 * 10 8 7 12 12 N 1.46897 * 109.47081 * 160.00099 * 10 8 7 13 13 C 1.52992 * 109.47067 * 280.00252 * 10 8 7 14 14 C 1.53002 * 109.46939 * 175.00044 * 13 10 8 15 15 C 1.50707 * 109.47244 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99550 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47079 * 90.00054 * 19 17 15 21 21 H 1.48496 * 109.47200 * 210.00251 * 19 17 15 22 22 H 1.48503 * 109.47312 * 330.00082 * 19 17 15 23 23 H 1.08999 * 109.47136 * 274.33404 * 1 2 3 24 24 H 1.08997 * 109.47026 * 34.32830 * 1 2 3 25 25 H 1.08994 * 109.47754 * 154.33045 * 1 2 3 26 26 H 1.09007 * 117.49717 * 145.02904 * 4 2 1 27 27 H 1.08994 * 117.50005 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.47272 * 200.73768 * 6 5 2 29 29 H 1.09002 * 109.47151 * 320.73774 * 6 5 2 30 30 H 1.09004 * 109.47247 * 80.73467 * 6 5 2 31 31 H 0.97000 * 120.00743 * 114.16399 * 7 5 2 32 32 H 1.00910 * 111.00126 * 296.04759 * 12 10 8 33 33 H 1.00897 * 111.00473 * 59.99858 * 12 10 8 34 34 H 1.09004 * 109.47079 * 294.99443 * 13 10 8 35 35 H 1.08996 * 109.47740 * 55.00107 * 13 10 8 36 36 H 1.09005 * 109.47223 * 299.99825 * 14 13 10 37 37 H 1.08997 * 109.47556 * 59.99767 * 14 13 10 38 38 H 0.97004 * 120.00214 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1211 -0.7647 5 6 2.2364 -1.1208 0.7654 6 6 3.5484 -0.7753 1.4725 7 7 1.3961 -2.1121 1.4416 8 6 0.6178 -1.7414 2.4777 9 8 0.6821 -0.6101 2.9100 10 6 -0.3323 -2.7325 3.0989 11 1 0.1491 -3.7086 3.1592 12 7 -0.6965 -2.2819 4.4488 13 6 -1.5933 -2.8381 2.2389 14 6 -2.5028 -3.9333 2.7997 15 6 -3.7446 -4.0377 1.9523 16 1 -3.8725 -3.3877 1.0993 17 6 -4.7174 -4.9631 2.2659 18 7 -4.5618 -5.7543 3.3047 19 14 -6.2570 -5.0921 1.2159 20 1 -6.0297 -6.0704 0.1221 21 1 -7.3934 -5.5455 2.0573 22 1 -6.5718 -3.7628 0.6335 23 1 -0.3633 0.0777 1.0247 24 1 -0.3633 0.8486 -0.5795 25 1 -0.3634 -0.9262 -0.4451 26 1 3.1720 -0.8752 -1.2678 27 1 1.6118 -1.8585 -1.2682 28 1 4.1165 -1.6884 1.6508 29 1 4.1321 -0.1007 0.8461 30 1 3.3314 -0.2907 2.4245 31 1 1.3997 -3.0352 1.1439 32 1 0.1103 -2.2659 5.0546 33 1 -1.1448 -1.3785 4.4198 34 1 -2.1222 -1.8851 2.2511 35 1 -1.3150 -3.0861 1.2147 36 1 -1.9739 -4.8863 2.7876 37 1 -2.7812 -3.6853 3.8239 38 1 -5.2460 -6.4057 3.5252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704015758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:36 Heat of formation + Delta-G solvation = -55.867451 kcal Electronic energy + Delta-G solvation = -17655.950066 eV Core-core repulsion = 14918.306213 eV Total energy + Delta-G solvation = -2737.643853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32987 -38.90450 -36.67893 -34.80190 -34.00263 -31.93231 -30.88041 -28.13324 -28.00066 -25.60185 -22.73177 -22.21743 -21.32037 -20.36480 -18.65396 -17.95013 -17.17595 -16.80386 -16.46253 -16.36410 -15.52219 -15.40856 -14.97927 -14.29232 -14.08212 -13.81344 -13.76019 -13.45023 -13.35679 -13.20263 -13.09520 -12.79421 -12.51343 -12.34166 -12.21682 -11.74434 -11.65959 -11.38515 -11.22778 -10.97161 -10.69208 -10.48764 -9.94852 -9.58004 -8.13818 -6.24151 1.41511 1.43028 1.53404 1.58352 2.13360 2.44670 2.70783 3.19334 3.55993 3.62735 3.81678 3.86416 4.02607 4.12534 4.32989 4.37208 4.59654 4.72427 4.77428 4.80896 4.86394 4.88794 4.94330 4.94811 5.13381 5.23573 5.24861 5.35713 5.56836 5.64136 5.84387 5.98586 6.11081 6.30423 6.48991 6.57087 6.94463 7.24862 7.44090 8.97487 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.005415 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.054529 B = 5169.799896 C = 5666.182852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.152 4.152 3 H 0.114 0.886 4 C -0.146 4.146 5 C 0.078 3.922 6 C -0.114 4.114 7 N -0.690 5.690 8 C 0.496 3.504 9 O -0.569 6.569 10 C 0.084 3.916 11 H 0.106 0.894 12 N -0.819 5.819 13 C -0.076 4.076 14 C 0.039 3.961 15 C -0.543 4.543 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.267 1.267 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.412 0.588 32 H 0.346 0.654 33 H 0.344 0.656 34 H 0.040 0.960 35 H 0.064 0.936 36 H -0.007 1.007 37 H 0.005 0.995 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.112 8.284 -7.566 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 H 0.132 0.868 4 C -0.183 4.183 5 C -0.009 4.009 6 C -0.172 4.172 7 N -0.342 5.342 8 C 0.281 3.719 9 O -0.448 6.448 10 C -0.032 4.032 11 H 0.124 0.876 12 N -0.348 5.348 13 C -0.115 4.115 14 C 0.002 3.998 15 C -0.581 4.581 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.249 0.751 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.012 0.988 37 H 0.023 0.977 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.586 8.298 -7.131 19.042 hybrid contribution -0.423 0.107 -0.399 0.591 sum 15.163 8.405 -7.530 18.901 Atomic orbital electron populations 1.21321 0.93784 1.01808 1.01175 1.22680 0.95088 0.95324 1.03983 0.86838 1.23613 1.03524 1.00272 0.90920 1.20976 0.93412 0.94917 0.91623 1.21438 0.93522 1.02117 1.00098 1.45408 1.43199 1.12561 1.32997 1.22220 0.80412 0.89456 0.79789 1.90625 1.69008 1.22192 1.62954 1.21633 0.94359 0.97252 0.89954 0.87571 1.58974 1.32011 1.35384 1.08403 1.21326 0.93411 0.99293 0.97425 1.18833 0.92884 0.92455 0.95651 1.21721 1.04946 1.18620 1.12850 0.92697 1.25886 1.01720 0.95436 0.96458 1.70103 1.35885 1.22593 1.28452 0.85546 0.78797 0.78642 0.78638 1.19600 1.20927 1.19139 0.94058 0.91481 0.93073 0.85385 0.87983 0.91174 0.89514 0.93967 0.75064 0.84093 0.84202 0.94128 0.91727 0.98837 0.97661 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 9.19 71.98 0.66 -2.57 16 2 C -0.15 -3.27 5.92 -10.79 -0.06 -3.33 16 3 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.15 -2.34 9.79 30.60 0.30 -2.04 16 5 C 0.08 1.63 2.18 3.60 0.01 1.64 16 6 C -0.11 -2.10 9.97 71.98 0.72 -1.38 16 7 N -0.69 -16.45 5.07 -422.92 -2.15 -18.59 16 8 C 0.50 15.03 5.77 87.66 0.51 15.54 16 9 O -0.57 -20.20 14.62 -3.03 -0.04 -20.24 16 10 C 0.08 2.79 3.15 44.17 0.14 2.93 16 11 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 12 N -0.82 -28.01 8.44 -171.81 -1.45 -29.46 16 13 C -0.08 -3.07 4.78 30.59 0.15 -2.93 16 14 C 0.04 2.03 4.86 29.85 0.15 2.18 16 15 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 16 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 19 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H 0.04 1.33 5.91 -2.39 -0.01 1.32 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.35 7.90 -2.39 -0.02 1.33 16 26 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.10 1.64 8.05 -2.39 -0.02 1.62 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.04 0.99 8.11 -2.39 -0.02 0.97 16 31 H 0.41 8.21 8.83 -92.71 -0.82 7.39 16 32 H 0.35 10.18 9.06 -89.69 -0.81 9.37 16 33 H 0.34 12.10 8.58 -89.70 -0.77 11.33 16 34 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H 0.00 0.29 7.75 -2.39 -0.02 0.27 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.53 315.95 0.59 -67.94 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -1.34 Total: 30.49 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.25 Total: -20.05 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -3.31 Total: -104.66 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.53 0.59 -67.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704015758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.077 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds