Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 H 1.09011 * 109.46791 * 304.99856 * 3 2 1 5 5 C 1.53001 * 109.47129 * 185.00310 * 3 2 1 6 6 N 1.46500 * 109.47342 * 64.99550 * 3 2 1 7 7 C 1.34768 * 119.99979 * 204.99941 * 6 3 2 8 8 O 1.21585 * 120.00389 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99983 * 180.02562 * 7 6 3 10 10 C 1.47418 * 125.64595 * 359.96225 * 9 7 6 11 11 C 1.54914 * 104.83156 * 204.16278 * 10 9 7 12 12 C 1.55156 * 101.58131 * 322.98743 * 11 10 9 13 13 H 1.08994 * 110.87554 * 277.06893 * 12 11 10 14 14 C 1.50698 * 110.71854 * 153.86206 * 12 11 10 15 15 H 1.08005 * 119.99819 * 5.03030 * 14 12 11 16 16 C 1.37875 * 120.00046 * 185.02371 * 14 12 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.47020 * 125.65022 * 180.02562 * 9 7 6 23 23 H 1.09006 * 109.47217 * 300.00266 * 1 2 3 24 24 H 1.09003 * 109.46935 * 60.00272 * 1 2 3 25 25 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47217 * 239.99734 * 2 1 3 27 27 H 1.09003 * 109.46935 * 119.99728 * 2 1 3 28 28 H 1.09007 * 109.47013 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46559 * 299.99442 * 5 3 2 30 30 H 1.08996 * 109.47300 * 59.99842 * 5 3 2 31 31 H 0.96995 * 119.99603 * 25.00661 * 6 3 2 32 32 H 1.08996 * 110.37131 * 323.00244 * 10 9 7 33 33 H 1.09008 * 110.37126 * 85.21587 * 10 9 7 34 34 H 1.09008 * 111.00296 * 204.91629 * 11 10 9 35 35 H 1.08998 * 111.00587 * 81.06767 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.88130 * 59.49195 * 22 9 7 38 38 H 1.09002 * 109.88408 * 298.32564 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 7 1.6524 2.0975 1.2517 7 6 1.5257 3.4384 1.2994 8 8 1.7325 4.1045 0.3035 9 7 1.1696 4.0411 2.4512 10 6 0.8892 3.3582 3.7272 11 6 -0.0347 4.3304 4.5026 12 6 0.5603 5.7077 4.1071 13 1 1.4188 5.9537 4.7319 14 6 -0.4880 6.7866 4.1957 15 1 -1.4702 6.5549 4.5804 16 6 -0.1931 8.0696 3.7859 17 7 1.0028 8.3517 3.3171 18 14 -1.4924 9.4072 3.8964 19 1 -0.9290 10.6871 3.3967 20 1 -1.9155 9.5707 5.3105 21 1 -2.6658 9.0271 3.0694 22 6 0.9952 5.4883 2.6427 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9283 2.4720 -0.1253 29 1 3.9994 0.9052 0.7161 30 1 3.8532 0.9569 -1.0571 31 1 1.4871 1.5662 2.0462 32 1 0.3786 2.4122 3.5471 33 1 1.8142 3.1901 4.2789 34 1 0.0402 4.1667 5.5777 35 1 -1.0675 4.2398 4.1662 36 1 1.6776 7.6572 3.2601 37 1 0.2253 5.8614 1.9674 38 1 1.9373 6.0033 2.4548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704195224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -48.885445 kcal Electronic energy + Delta-G solvation = -17826.221192 eV Core-core repulsion = 15088.880101 eV Total energy + Delta-G solvation = -2737.341090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.81426 -37.48724 -35.94613 -33.33813 -32.03137 -30.46380 -29.43550 -27.80556 -24.83273 -23.80176 -22.53981 -20.97046 -20.01108 -19.43851 -17.72291 -16.68193 -16.21627 -15.38676 -14.57555 -14.21585 -14.03335 -13.73755 -13.61833 -13.43052 -13.11535 -12.45790 -12.35069 -12.16251 -11.87281 -11.75664 -11.43153 -11.24583 -11.16669 -10.83295 -10.75452 -10.69829 -10.09998 -10.03287 -9.64711 -9.61418 -8.85450 -8.62199 -8.43389 -7.84248 -6.37726 -4.13120 3.09674 3.43954 3.46154 3.64710 3.70298 4.38082 4.52778 4.65183 4.93990 4.98185 5.30000 5.34180 5.38692 5.49304 5.54573 5.62266 5.68627 5.72287 5.79537 5.82185 5.93210 6.09168 6.14208 6.27707 6.29400 6.56578 6.68975 6.78148 6.82435 6.92599 7.10450 7.48476 7.58246 8.13114 8.35718 8.51112 8.81688 9.10269 9.59047 10.99411 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.005433 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.563767 B = 5152.691383 C = 5326.509320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.158 3.842 4 H 0.086 0.914 5 C -0.164 4.164 6 N -0.745 5.745 7 C 0.715 3.285 8 O -0.595 6.595 9 N -0.632 5.632 10 C 0.100 3.900 11 C -0.118 4.118 12 C 0.028 3.972 13 H 0.031 0.969 14 C -0.597 4.597 15 H 0.054 0.946 16 C 0.021 3.979 17 N -0.905 5.905 18 Si 1.069 2.931 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.132 3.868 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.391 0.609 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.272 0.728 37 H 0.063 0.937 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -16.596 -2.182 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.053 3.947 4 H 0.104 0.896 5 C -0.222 4.222 6 N -0.402 5.402 7 C 0.417 3.583 8 O -0.474 6.474 9 N -0.369 5.369 10 C -0.023 4.023 11 C -0.156 4.156 12 C 0.008 3.992 13 H 0.049 0.951 14 C -0.635 4.635 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.541 5.541 18 Si 0.897 3.103 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C 0.010 3.990 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.805 -14.499 -3.306 14.893 hybrid contribution 0.267 -1.973 0.714 2.115 sum 1.072 -16.472 -2.592 16.709 Atomic orbital electron populations 1.21765 0.95355 1.01315 1.02531 1.21828 0.96577 0.95682 1.02653 1.20782 0.94464 0.92261 0.87204 0.89584 1.22207 0.95936 1.02760 1.01320 1.45239 1.76010 1.05475 1.13482 1.15558 0.78300 0.81564 0.82887 1.90885 1.58659 1.63838 1.34031 1.47997 1.71106 1.09708 1.08133 1.22249 0.98669 0.95837 0.85553 1.22724 0.98514 0.96076 0.98330 1.19912 0.96600 0.92466 0.90183 0.95112 1.21865 0.98967 0.94863 1.47824 0.92786 1.25876 1.00138 0.99235 0.93193 1.70821 1.03870 1.37688 1.41718 0.83532 0.74534 0.75846 0.76354 1.20715 1.21401 1.21401 1.22549 0.99987 0.75937 1.00551 0.92495 0.92539 0.92796 0.90567 0.91653 0.91867 0.92834 0.92022 0.77534 0.92555 0.92550 0.91509 0.91370 0.91601 0.91878 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.13 -1.18 5.47 -26.73 -0.15 -1.33 16 3 C 0.16 2.01 2.57 -67.93 -0.17 1.83 16 4 H 0.09 1.29 7.58 -51.92 -0.39 0.89 16 5 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 6 N -0.75 -11.01 4.49 -58.67 -0.26 -11.27 16 7 C 0.71 14.48 8.45 -86.92 -0.73 13.75 16 8 O -0.60 -14.52 16.33 5.29 0.09 -14.44 16 9 N -0.63 -13.03 3.33 -176.24 -0.59 -13.62 16 10 C 0.10 1.67 6.57 -2.53 -0.02 1.65 16 11 C -0.12 -2.27 6.50 -24.58 -0.16 -2.43 16 12 C 0.03 0.67 2.52 -89.94 -0.23 0.44 16 13 H 0.03 0.78 8.08 -51.93 -0.42 0.37 16 14 C -0.60 -16.26 8.40 -34.44 -0.29 -16.55 16 15 H 0.05 1.45 7.78 -52.48 -0.41 1.04 16 16 C 0.02 0.59 5.33 -17.82 -0.10 0.50 16 17 N -0.91 -27.14 13.42 55.43 0.74 -26.39 16 18 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.13 3.25 5.33 -3.06 -0.02 3.24 16 23 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.39 4.81 7.08 -40.82 -0.29 4.52 16 32 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 33 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 36 H 0.27 8.11 5.50 -40.82 -0.22 7.88 16 37 H 0.06 1.75 7.81 -51.93 -0.41 1.34 16 38 H 0.05 1.30 6.90 -51.93 -0.36 0.95 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -32.23 306.34 -7.93 -40.16 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.30 Total: 2.69 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.14 Total: -1.58 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.11 Total: -51.28 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.23 -7.93 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704195224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.730 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds