Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 H 1.09011 * 109.46791 * 304.99856 * 3 2 1 5 5 C 1.53001 * 109.47129 * 185.00310 * 3 2 1 6 6 N 1.46500 * 109.47342 * 64.99550 * 3 2 1 7 7 C 1.34768 * 119.99979 * 204.99941 * 6 3 2 8 8 O 1.21585 * 120.00389 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99983 * 180.02562 * 7 6 3 10 10 C 1.47418 * 125.64595 * 359.96225 * 9 7 6 11 11 C 1.54914 * 104.83156 * 204.16278 * 10 9 7 12 12 C 1.55156 * 101.58131 * 322.98743 * 11 10 9 13 13 H 1.08994 * 110.87554 * 277.06893 * 12 11 10 14 14 C 1.50698 * 110.71854 * 153.86206 * 12 11 10 15 15 H 1.08005 * 119.99819 * 5.03030 * 14 12 11 16 16 C 1.37875 * 120.00046 * 185.02371 * 14 12 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.47020 * 125.65022 * 180.02562 * 9 7 6 23 23 H 1.09006 * 109.47217 * 300.00266 * 1 2 3 24 24 H 1.09003 * 109.46935 * 60.00272 * 1 2 3 25 25 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47217 * 239.99734 * 2 1 3 27 27 H 1.09003 * 109.46935 * 119.99728 * 2 1 3 28 28 H 1.09007 * 109.47013 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46559 * 299.99442 * 5 3 2 30 30 H 1.08996 * 109.47300 * 59.99842 * 5 3 2 31 31 H 0.96995 * 119.99603 * 25.00661 * 6 3 2 32 32 H 1.08996 * 110.37131 * 323.00244 * 10 9 7 33 33 H 1.09008 * 110.37126 * 85.21587 * 10 9 7 34 34 H 1.09008 * 111.00296 * 204.91629 * 11 10 9 35 35 H 1.08998 * 111.00587 * 81.06767 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.88130 * 59.49195 * 22 9 7 38 38 H 1.09002 * 109.88408 * 298.32564 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 7 1.6524 2.0975 1.2517 7 6 1.5257 3.4384 1.2994 8 8 1.7325 4.1045 0.3035 9 7 1.1696 4.0411 2.4512 10 6 0.8892 3.3582 3.7272 11 6 -0.0347 4.3304 4.5026 12 6 0.5603 5.7077 4.1071 13 1 1.4188 5.9537 4.7319 14 6 -0.4880 6.7866 4.1957 15 1 -1.4702 6.5549 4.5804 16 6 -0.1931 8.0696 3.7859 17 7 1.0028 8.3517 3.3171 18 14 -1.4924 9.4072 3.8964 19 1 -0.9290 10.6871 3.3967 20 1 -1.9155 9.5707 5.3105 21 1 -2.6658 9.0271 3.0694 22 6 0.9952 5.4883 2.6427 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9283 2.4720 -0.1253 29 1 3.9994 0.9052 0.7161 30 1 3.8532 0.9569 -1.0571 31 1 1.4871 1.5662 2.0462 32 1 0.3786 2.4122 3.5471 33 1 1.8142 3.1901 4.2789 34 1 0.0402 4.1667 5.5777 35 1 -1.0675 4.2398 4.1662 36 1 1.6776 7.6572 3.2601 37 1 0.2253 5.8614 1.9674 38 1 1.9373 6.0033 2.4548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704195224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -70.189647 kcal Electronic energy + Delta-G solvation = -17827.145011 eV Core-core repulsion = 15088.880101 eV Total energy + Delta-G solvation = -2738.264910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37554 -39.03535 -37.31151 -35.30469 -33.38587 -31.94162 -30.57616 -29.55859 -26.80561 -24.88237 -24.04420 -22.19073 -21.58924 -21.03917 -19.41976 -18.55884 -17.60393 -16.97916 -16.01993 -15.69831 -15.63799 -15.13224 -14.84095 -14.70744 -14.35278 -14.14482 -13.85832 -13.69956 -13.34421 -13.07308 -12.68904 -12.61437 -12.49216 -12.27512 -11.98163 -11.94367 -11.82730 -11.63537 -11.45078 -11.32582 -10.66055 -10.57063 -10.26083 -9.49583 -8.61391 -6.37494 1.53680 1.59165 1.65350 1.80642 2.09363 2.58178 3.04312 3.17568 3.76459 3.83819 4.05215 4.08948 4.18267 4.26255 4.37725 4.47127 4.52624 4.62545 4.71965 4.74505 4.84220 4.95857 4.96668 5.04833 5.09527 5.13122 5.19298 5.26747 5.31570 5.40932 5.53675 5.61870 6.01632 6.10980 6.18820 6.59375 7.02641 7.43983 7.53623 8.75949 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.005433 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.563767 B = 5152.691383 C = 5326.509320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.151 3.849 4 H 0.056 0.944 5 C -0.158 4.158 6 N -0.720 5.720 7 C 0.709 3.291 8 O -0.647 6.647 9 N -0.638 5.638 10 C 0.104 3.896 11 C -0.109 4.109 12 C 0.017 3.983 13 H 0.015 0.985 14 C -0.605 4.605 15 H 0.058 0.942 16 C -0.032 4.032 17 N -0.937 5.937 18 Si 1.114 2.886 19 H -0.289 1.289 20 H -0.263 1.263 21 H -0.274 1.274 22 C 0.153 3.847 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.408 0.592 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.259 0.741 37 H 0.020 0.980 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -19.644 -1.096 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.047 3.953 4 H 0.074 0.926 5 C -0.217 4.217 6 N -0.377 5.377 7 C 0.411 3.589 8 O -0.529 6.529 9 N -0.375 5.375 10 C -0.018 4.018 11 C -0.147 4.147 12 C -0.002 4.002 13 H 0.033 0.967 14 C -0.643 4.643 15 H 0.076 0.924 16 C -0.231 4.231 17 N -0.575 5.575 18 Si 0.936 3.064 19 H -0.214 1.214 20 H -0.188 1.188 21 H -0.200 1.200 22 C 0.028 3.972 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.245 0.755 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.039 -17.643 -2.179 17.777 hybrid contribution 0.521 -1.092 0.347 1.259 sum 0.560 -18.735 -1.832 18.833 Atomic orbital electron populations 1.21783 0.95717 1.02339 1.01278 1.21789 0.96094 0.92770 1.04825 1.21039 0.95122 0.94074 0.85098 0.92552 1.22160 0.95087 1.00879 1.03555 1.45090 1.74326 1.03246 1.15083 1.15820 0.78056 0.83113 0.81959 1.90847 1.60712 1.65472 1.35881 1.47931 1.71416 1.08256 1.09906 1.22479 0.99662 0.96368 0.83254 1.22667 0.98420 0.93115 1.00452 1.19883 0.95764 0.95042 0.89525 0.96728 1.22288 0.99695 0.95732 1.46596 0.92395 1.27312 1.01032 1.02257 0.92513 1.70933 1.04855 1.37485 1.44210 0.82973 0.72602 0.73005 0.77849 1.21447 1.18761 1.19989 1.21941 0.96751 0.78537 0.99944 0.93630 0.93997 0.90608 0.88392 0.89373 0.95713 0.90899 0.89540 0.75502 0.88171 0.90248 0.88718 0.91766 0.92986 0.96150 0.96567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.80 71.98 0.71 -1.79 16 2 C -0.12 -1.70 5.47 30.59 0.17 -1.54 16 3 C 0.15 3.60 2.57 44.99 0.12 3.72 16 4 H 0.06 1.70 7.58 -2.38 -0.02 1.68 16 5 C -0.16 -3.50 9.48 71.98 0.68 -2.82 16 6 N -0.72 -20.06 4.49 -457.81 -2.06 -22.12 16 7 C 0.71 28.94 8.45 179.06 1.51 30.46 16 8 O -0.65 -33.05 16.33 -3.98 -0.07 -33.12 16 9 N -0.64 -26.31 3.33 -829.77 -2.76 -29.07 16 10 C 0.10 3.16 6.57 86.86 0.57 3.73 16 11 C -0.11 -3.94 6.50 31.99 0.21 -3.73 16 12 C 0.02 0.85 2.52 -10.35 -0.03 0.82 16 13 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 14 C -0.61 -33.39 8.40 25.60 0.22 -33.18 16 15 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 16 C -0.03 -1.86 5.33 84.65 0.45 -1.41 16 17 N -0.94 -58.57 13.42 21.45 0.29 -58.28 16 18 Si 1.11 50.51 29.90 68.60 2.05 52.56 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.15 7.88 5.33 86.73 0.46 8.34 16 23 H 0.04 0.83 7.75 -2.38 -0.02 0.82 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.41 8.56 7.08 -92.71 -0.66 7.91 16 32 H 0.10 2.22 7.30 -2.39 -0.02 2.21 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 36 H 0.26 16.40 5.50 -92.71 -0.51 15.89 16 37 H 0.02 1.19 7.81 -2.39 -0.02 1.17 16 38 H 0.02 0.92 6.90 -2.39 -0.02 0.90 16 Total: -1.00 -75.46 306.34 3.16 -72.30 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.63 Total: 15.13 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.07 Total: 2.59 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.53 Total: -109.47 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.07 Total: -33.12 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -75.46 3.16 -72.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704195224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.115 kcal (2) G-P(sol) polarization free energy of solvation -75.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds