Wall clock time and date at job start Mon Mar 30 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.54585 * 2 1 4 4 C 1.52997 * 117.50041 * 214.33169 * 2 1 3 5 5 C 1.52995 * 117.50008 * 145.66966 * 2 1 3 6 6 C 1.53000 * 117.49836 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50193 * 214.98462 * 5 2 1 8 8 N 1.46894 * 109.47668 * 180.02562 * 7 5 2 9 9 C 1.46898 * 111.00556 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47479 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99978 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00071 * 179.97438 * 10 9 8 13 13 C 1.46510 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46966 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99341 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46943 * 89.99938 * 18 16 14 20 20 H 1.48496 * 109.47532 * 210.00092 * 18 16 14 21 21 H 1.48502 * 109.46947 * 330.00557 * 18 16 14 22 22 H 1.09001 * 109.47002 * 154.41394 * 1 2 3 23 23 H 1.08993 * 109.46955 * 274.41831 * 1 2 3 24 24 H 1.09000 * 109.47050 * 34.41660 * 1 2 3 25 25 H 1.09005 * 117.49810 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49639 * 145.01797 * 4 2 1 27 27 H 1.09009 * 109.47096 * 60.00291 * 6 5 2 28 28 H 1.09000 * 109.47362 * 179.97438 * 6 5 2 29 29 H 1.08999 * 109.47499 * 300.00161 * 6 5 2 30 30 H 1.09008 * 109.47021 * 299.99905 * 7 5 2 31 31 H 1.08996 * 109.47483 * 59.99215 * 7 5 2 32 32 H 1.00905 * 111.00388 * 56.04005 * 8 7 5 33 33 H 1.09003 * 109.46693 * 299.99988 * 9 8 7 34 34 H 1.09001 * 109.47024 * 59.99546 * 9 8 7 35 35 H 0.96994 * 120.00388 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.46997 * 299.99805 * 13 12 10 37 37 H 1.09004 * 109.46657 * 60.00358 * 13 12 10 38 38 H 0.97002 * 119.99869 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7653 6 6 1.3589 -2.1560 1.4716 7 6 3.5490 -0.7754 1.4718 8 7 4.0719 -1.9714 2.1455 9 6 5.3348 -1.6771 2.8357 10 6 5.8392 -2.9247 3.5140 11 8 5.2084 -3.9573 3.4311 12 7 6.9912 -2.8930 4.2128 13 6 7.4812 -4.1058 4.8728 14 6 8.7768 -3.8039 5.5807 15 1 9.1938 -2.8083 5.5424 16 6 9.4305 -4.7988 6.2762 17 7 8.9235 -6.0115 6.3214 18 14 11.0369 -4.4248 7.1531 19 1 10.7515 -3.9841 8.5422 20 1 11.8798 -5.6469 7.1849 21 1 11.7563 -3.3458 6.4295 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0792 1.0246 24 1 -0.3633 0.8478 -0.5808 25 1 1.6113 -1.8583 -1.2686 26 1 3.1716 -0.8746 -1.2686 27 1 0.7299 -2.6603 0.7379 28 1 1.9923 -2.8888 1.9716 29 1 0.7292 -1.6568 2.2081 30 1 4.2753 -0.4254 0.7382 31 1 3.3701 0.0080 2.2082 32 1 4.1854 -2.7332 1.4937 33 1 6.0731 -1.3332 2.1113 34 1 5.1686 -0.9002 3.5819 35 1 7.4955 -2.0672 4.2795 36 1 6.7429 -4.4486 5.5976 37 1 7.6468 -4.8835 4.1271 38 1 9.3835 -6.7116 6.8105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704265961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:22 Heat of formation + Delta-G solvation = -26.570129 kcal Electronic energy + Delta-G solvation = -16658.655338 eV Core-core repulsion = 13922.281913 eV Total energy + Delta-G solvation = -2736.373425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.22971 -38.56714 -35.08762 -34.06053 -32.30546 -29.95405 -28.05578 -27.96275 -26.47413 -24.07583 -22.23606 -21.09209 -19.72973 -18.77356 -17.24825 -16.19331 -15.62698 -15.44801 -15.10281 -14.61842 -14.29181 -14.00212 -13.58756 -13.41275 -13.25097 -12.71983 -12.32382 -12.26405 -12.09848 -11.96199 -11.90669 -11.51748 -11.45404 -11.09694 -10.97503 -10.86804 -10.31214 -9.99239 -9.61564 -9.38864 -9.01791 -8.72545 -8.33358 -7.84826 -6.15950 -4.22867 3.24483 3.30417 3.32793 3.41289 3.49433 3.85214 4.29687 4.46638 4.57694 4.67747 4.79326 5.01976 5.11176 5.20032 5.32630 5.40310 5.53691 5.54387 5.58422 5.61069 5.62996 5.67132 5.80833 5.86193 5.99929 6.06309 6.14356 6.50585 6.95054 7.33320 7.42269 7.47167 7.53808 7.68649 7.98337 8.65393 8.79952 9.13964 9.43917 10.94308 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074870 B = 0.003363 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.891932 B = 8322.702642 C = 8515.678301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.150 4.150 3 H 0.100 0.900 4 C -0.176 4.176 5 C -0.117 4.117 6 C -0.112 4.112 7 C 0.097 3.903 8 N -0.667 5.667 9 C 0.040 3.960 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.715 5.715 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.352 0.648 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 13.008 -11.794 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.169 4.169 3 H 0.118 0.882 4 C -0.213 4.213 5 C -0.117 4.117 6 C -0.169 4.169 7 C -0.032 4.032 8 N -0.299 5.299 9 C -0.093 4.093 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.364 5.364 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.587 12.123 -11.197 20.755 hybrid contribution 1.842 0.685 -0.234 1.979 sum -10.745 12.808 -11.431 20.253 Atomic orbital electron populations 1.21312 0.92872 1.01635 1.01832 1.22411 0.95316 0.94306 1.04836 0.88176 1.23339 1.02371 1.01528 0.94082 1.21607 0.97460 1.00104 0.92567 1.21259 0.98401 0.97768 0.99447 1.21447 0.92951 0.92814 0.96035 1.60117 1.27672 1.07750 1.34396 1.21839 0.91290 0.97370 0.98807 1.20352 0.81646 0.89743 0.80216 1.90663 1.56998 1.32756 1.61740 1.46447 1.22733 1.15476 1.51759 1.19086 0.94005 0.81686 0.92233 1.21232 1.06774 0.96860 1.33289 0.91929 1.24960 0.98136 0.94786 0.96188 1.69980 1.39331 1.01643 1.41339 0.86411 0.82713 0.77871 0.79887 1.20448 1.21006 1.19777 0.92545 0.92111 0.92516 0.88829 0.89183 0.93425 0.89673 0.92648 0.95291 0.90688 0.82860 0.92967 0.88631 0.77812 0.95538 0.95620 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.21 37.16 0.34 -0.57 16 2 C -0.15 -1.31 6.12 -90.62 -0.55 -1.86 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.18 -1.60 9.47 -26.70 -0.25 -1.86 16 5 C -0.12 -1.20 2.51 -154.48 -0.39 -1.58 16 6 C -0.11 -1.24 8.76 37.16 0.33 -0.91 16 7 C 0.10 1.06 5.82 -3.83 -0.02 1.04 16 8 N -0.67 -9.22 4.65 -115.07 -0.53 -9.75 16 9 C 0.04 0.56 6.17 -4.98 -0.03 0.53 16 10 C 0.50 9.91 7.87 -10.99 -0.09 9.83 16 11 O -0.54 -13.17 16.20 5.55 0.09 -13.08 16 12 N -0.71 -15.07 5.55 -61.47 -0.34 -15.41 16 13 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 14 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H 0.06 0.43 7.77 -51.93 -0.40 0.02 16 23 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.82 7.96 -51.93 -0.41 0.41 16 26 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 27 H 0.05 0.48 7.77 -51.92 -0.40 0.07 16 28 H 0.08 1.13 6.70 -51.93 -0.35 0.79 16 29 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 30 H 0.03 0.29 7.90 -51.92 -0.41 -0.12 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.35 5.13 8.32 -39.29 -0.33 4.81 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.39 6.97 8.32 -40.82 -0.34 6.64 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -31.47 318.37 -7.77 -39.24 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.39 Total: 6.04 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.11 Total: -2.20 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.14 Total: -50.69 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.47 -7.77 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704265961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.669 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds