Wall clock time and date at job start Mon Mar 30 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.54585 * 2 1 4 4 C 1.52997 * 117.50041 * 214.33169 * 2 1 3 5 5 C 1.52995 * 117.50008 * 145.66966 * 2 1 3 6 6 C 1.53000 * 117.49836 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50193 * 214.98462 * 5 2 1 8 8 N 1.46894 * 109.47668 * 180.02562 * 7 5 2 9 9 C 1.46898 * 111.00556 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47479 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99978 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00071 * 179.97438 * 10 9 8 13 13 C 1.46510 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46966 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99341 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46943 * 89.99938 * 18 16 14 20 20 H 1.48496 * 109.47532 * 210.00092 * 18 16 14 21 21 H 1.48502 * 109.46947 * 330.00557 * 18 16 14 22 22 H 1.09001 * 109.47002 * 154.41394 * 1 2 3 23 23 H 1.08993 * 109.46955 * 274.41831 * 1 2 3 24 24 H 1.09000 * 109.47050 * 34.41660 * 1 2 3 25 25 H 1.09005 * 117.49810 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49639 * 145.01797 * 4 2 1 27 27 H 1.09009 * 109.47096 * 60.00291 * 6 5 2 28 28 H 1.09000 * 109.47362 * 179.97438 * 6 5 2 29 29 H 1.08999 * 109.47499 * 300.00161 * 6 5 2 30 30 H 1.09008 * 109.47021 * 299.99905 * 7 5 2 31 31 H 1.08996 * 109.47483 * 59.99215 * 7 5 2 32 32 H 1.00905 * 111.00388 * 56.04005 * 8 7 5 33 33 H 1.09003 * 109.46693 * 299.99988 * 9 8 7 34 34 H 1.09001 * 109.47024 * 59.99546 * 9 8 7 35 35 H 0.96994 * 120.00388 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.46997 * 299.99805 * 13 12 10 37 37 H 1.09004 * 109.46657 * 60.00358 * 13 12 10 38 38 H 0.97002 * 119.99869 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7653 6 6 1.3589 -2.1560 1.4716 7 6 3.5490 -0.7754 1.4718 8 7 4.0719 -1.9714 2.1455 9 6 5.3348 -1.6771 2.8357 10 6 5.8392 -2.9247 3.5140 11 8 5.2084 -3.9573 3.4311 12 7 6.9912 -2.8930 4.2128 13 6 7.4812 -4.1058 4.8728 14 6 8.7768 -3.8039 5.5807 15 1 9.1938 -2.8083 5.5424 16 6 9.4305 -4.7988 6.2762 17 7 8.9235 -6.0115 6.3214 18 14 11.0369 -4.4248 7.1531 19 1 10.7515 -3.9841 8.5422 20 1 11.8798 -5.6469 7.1849 21 1 11.7563 -3.3458 6.4295 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0792 1.0246 24 1 -0.3633 0.8478 -0.5808 25 1 1.6113 -1.8583 -1.2686 26 1 3.1716 -0.8746 -1.2686 27 1 0.7299 -2.6603 0.7379 28 1 1.9923 -2.8888 1.9716 29 1 0.7292 -1.6568 2.2081 30 1 4.2753 -0.4254 0.7382 31 1 3.3701 0.0080 2.2082 32 1 4.1854 -2.7332 1.4937 33 1 6.0731 -1.3332 2.1113 34 1 5.1686 -0.9002 3.5819 35 1 7.4955 -2.0672 4.2795 36 1 6.7429 -4.4486 5.5976 37 1 7.6468 -4.8835 4.1271 38 1 9.3835 -6.7116 6.8105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704265961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:22 Heat of formation + Delta-G solvation = -48.767243 kcal Electronic energy + Delta-G solvation = -16659.617877 eV Core-core repulsion = 13922.281913 eV Total energy + Delta-G solvation = -2737.335964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56180 -39.68055 -36.36904 -35.82947 -34.33207 -30.92742 -29.62491 -28.73804 -27.87303 -25.36861 -24.02903 -21.79839 -21.40731 -19.70357 -18.86693 -17.68958 -17.19775 -16.92981 -16.45602 -15.90710 -15.66361 -15.30243 -14.75761 -14.46870 -14.16383 -14.07570 -13.98474 -13.75092 -13.27951 -12.98750 -12.89006 -12.80428 -12.76086 -12.67978 -12.22971 -12.22413 -11.89671 -11.48633 -10.81096 -10.80136 -10.63995 -10.33896 -9.81707 -9.34597 -8.29165 -6.45927 1.43154 1.45739 1.56892 1.80347 2.29079 2.48934 2.83098 3.05684 3.30304 3.80785 3.93003 3.96689 4.04744 4.20626 4.37033 4.44837 4.49346 4.64224 4.72618 4.92399 4.93960 4.96586 5.05396 5.11792 5.14580 5.21903 5.24681 5.28809 5.45690 5.49331 5.59812 5.69412 5.85233 6.00564 6.33191 6.65655 6.95423 7.23780 7.53287 8.83176 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074870 B = 0.003363 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.891932 B = 8322.702642 C = 8515.678301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.138 4.138 3 H 0.111 0.889 4 C -0.175 4.175 5 C -0.134 4.134 6 C -0.107 4.107 7 C 0.101 3.899 8 N -0.684 5.684 9 C 0.056 3.944 10 C 0.492 3.508 11 O -0.592 6.592 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.255 1.255 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.344 0.656 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.409 0.591 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 15.810 -12.349 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 H 0.129 0.871 4 C -0.212 4.212 5 C -0.134 4.134 6 C -0.164 4.164 7 C -0.027 4.027 8 N -0.316 5.316 9 C -0.075 4.075 10 C 0.279 3.721 11 O -0.473 6.473 12 N -0.360 5.360 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.178 1.178 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.244 0.756 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.809 14.993 -11.773 22.424 hybrid contribution 1.500 -0.211 -0.107 1.519 sum -10.309 14.782 -11.880 21.585 Atomic orbital electron populations 1.21340 0.92248 1.02182 1.01991 1.22506 0.95826 0.94275 1.03096 0.87105 1.23390 1.02805 1.01795 0.93181 1.21570 0.97479 1.01116 0.93227 1.21164 0.98177 0.97552 0.99532 1.21481 0.93347 0.91548 0.96368 1.60124 1.27522 1.08915 1.35018 1.21751 0.92193 0.94009 0.99594 1.21461 0.80397 0.91169 0.79086 1.90641 1.58177 1.35318 1.63183 1.46180 1.23620 1.14477 1.51721 1.18512 0.93449 0.83098 0.90540 1.21633 1.06713 0.97930 1.33084 0.89732 1.26094 1.02367 0.94360 0.96930 1.70147 1.41403 1.03048 1.42471 0.85141 0.77362 0.78004 0.78612 1.19607 1.20989 1.17827 0.92711 0.92275 0.91185 0.88778 0.88560 0.92800 0.92369 0.92719 0.93832 0.90052 0.83706 0.89840 0.86151 0.75572 0.99719 0.99565 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.21 71.98 0.66 -0.94 16 2 C -0.14 -2.08 6.12 -10.79 -0.07 -2.14 16 3 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 4 C -0.17 -2.84 9.47 30.62 0.29 -2.55 16 5 C -0.13 -2.52 2.51 -52.16 -0.13 -2.65 16 6 C -0.11 -2.34 8.76 71.98 0.63 -1.71 16 7 C 0.10 1.98 5.82 86.30 0.50 2.48 16 8 N -0.68 -18.13 4.65 -517.96 -2.41 -20.54 16 9 C 0.06 1.49 6.17 85.56 0.53 2.01 16 10 C 0.49 19.69 7.87 87.66 0.69 20.38 16 11 O -0.59 -29.81 16.20 -3.05 -0.05 -29.86 16 12 N -0.71 -29.94 5.55 -466.77 -2.59 -32.53 16 13 C 0.27 14.83 5.43 85.63 0.46 15.30 16 14 C -0.56 -30.39 9.28 25.60 0.24 -30.15 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.11 5.46 84.65 0.46 0.57 16 17 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 18 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 22 H 0.05 0.74 7.77 -2.39 -0.02 0.72 16 23 H 0.06 0.81 8.02 -2.39 -0.02 0.79 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.51 7.96 -2.38 -0.02 1.49 16 26 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 27 H 0.05 1.06 7.77 -2.38 -0.02 1.04 16 28 H 0.06 1.59 6.70 -2.39 -0.02 1.57 16 29 H 0.05 1.16 8.02 -2.39 -0.02 1.14 16 30 H 0.04 0.74 7.90 -2.38 -0.02 0.72 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.34 10.00 8.32 -89.69 -0.75 9.25 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.73 318.37 1.06 -69.67 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.47 Total: 24.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.27 Total: 0.60 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.71 Total: -109.55 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.05 Total: -29.86 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.73 1.06 -69.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704265961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.899 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds