Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46956 * 2 1 4 4 N 1.46497 * 109.47514 * 119.99934 * 2 1 3 5 5 C 1.46505 * 119.99793 * 124.28630 * 4 2 1 6 6 C 1.50694 * 109.47100 * 270.00399 * 5 4 2 7 7 H 1.07999 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99596 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00134 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99792 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46825 * 59.99950 * 10 8 6 12 12 H 1.48498 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47284 * 299.99895 * 10 8 6 14 14 C 1.34777 * 120.00114 * 304.29312 * 4 2 1 15 15 O 1.21279 * 119.99708 * 354.48399 * 14 4 2 16 16 C 1.50699 * 119.99776 * 174.48733 * 14 4 2 17 17 H 1.08996 * 115.55023 * 39.05783 * 16 14 4 18 18 C 1.53002 * 117.49637 * 253.34452 * 16 14 4 19 19 C 1.53005 * 117.49476 * 184.72395 * 16 14 4 20 20 H 1.08998 * 117.49770 * 215.00215 * 19 16 14 21 21 C 1.53002 * 117.50046 * 0.02562 * 19 16 14 22 22 N 1.46897 * 109.46863 * 184.99567 * 21 19 16 23 23 H 1.08996 * 109.46867 * 295.20633 * 1 2 3 24 24 H 1.08998 * 109.47662 * 55.21087 * 1 2 3 25 25 H 1.09000 * 109.46926 * 175.21018 * 1 2 3 26 26 H 1.08997 * 109.47149 * 240.00665 * 2 1 3 27 27 H 1.09000 * 109.47088 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46702 * 300.00304 * 3 2 1 29 29 H 1.09003 * 109.47030 * 60.00216 * 3 2 1 30 30 H 1.08993 * 109.46670 * 150.00243 * 5 4 2 31 31 H 1.08997 * 109.46607 * 30.00203 * 5 4 2 32 32 H 0.97001 * 119.99926 * 180.02562 * 9 8 6 33 33 H 1.08996 * 117.49685 * 0.02562 * 18 16 14 34 34 H 1.09007 * 117.49360 * 145.02414 * 18 16 14 35 35 H 1.08995 * 109.46636 * 304.99814 * 21 19 16 36 36 H 1.09001 * 109.46892 * 64.99480 * 21 19 16 37 37 H 1.00900 * 111.00274 * 56.04715 * 22 21 19 38 38 H 1.00901 * 110.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.9365 -1.8246 1.0637 6 6 2.1446 -3.1022 0.9569 7 1 1.0654 -3.0726 0.9853 8 6 2.7979 -4.3091 0.8240 9 7 4.1121 -4.3452 0.7899 10 14 1.8162 -5.8930 0.6924 11 1 0.9326 -5.8301 -0.4996 12 1 2.7468 -7.0424 0.5580 13 1 0.9888 -6.0655 1.9134 14 6 1.6231 -0.2827 2.4184 15 8 0.9444 0.7156 2.5343 16 6 2.0246 -1.0673 3.6408 17 1 3.0393 -1.4652 3.6317 18 6 0.9439 -1.9022 4.3308 19 6 1.4540 -0.6178 4.9875 20 1 2.0934 -0.7201 5.8643 21 6 0.5191 0.5933 4.9898 22 7 0.1735 0.9423 6.3742 23 1 -0.3633 0.4376 0.9298 24 1 -0.3634 0.5863 -0.8439 25 1 -0.3633 -1.0241 -0.0858 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.5850 -1.8710 1.9385 31 1 3.5438 -1.6975 0.1675 32 1 4.5716 -5.1943 0.6960 33 1 -0.0573 -1.8843 3.9002 34 1 1.2476 -2.8498 4.7757 35 1 1.0183 1.4384 4.5158 36 1 -0.3895 0.3520 4.4382 37 1 1.0035 1.1077 6.9235 38 1 -0.4441 1.7398 6.4026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715079022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = -16.772258 kcal Electronic energy + Delta-G solvation = -18245.304036 eV Core-core repulsion = 15509.355478 eV Total energy + Delta-G solvation = -2735.948558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72757 -36.96911 -35.02927 -33.37135 -32.88487 -31.33250 -26.98168 -26.64206 -25.14634 -23.83024 -22.75043 -21.06871 -20.24199 -17.74012 -16.53054 -16.21647 -15.75427 -15.12133 -14.73019 -14.31490 -14.20355 -13.72853 -13.34559 -13.05899 -12.67982 -12.40243 -12.24275 -11.85520 -11.75807 -11.45494 -11.38672 -10.95469 -10.93838 -10.84835 -10.70908 -10.37060 -10.07136 -9.77937 -9.72853 -9.65827 -8.83406 -8.52607 -8.19238 -7.65935 -6.15685 -4.21984 3.25234 3.27950 3.30228 3.34762 3.85891 4.34969 4.39120 4.79113 5.16607 5.19352 5.43099 5.46145 5.52754 5.69818 5.71945 5.78409 5.90332 6.09468 6.14403 6.19296 6.26855 6.30158 6.35752 6.43437 6.54095 6.70299 6.76633 6.80891 6.87725 7.21447 7.35985 7.61577 7.63242 7.79554 8.09216 8.40300 8.83386 9.08340 9.45330 10.91198 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.008833 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.681388 B = 3169.292227 C = 4051.413161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.587 5.587 5 C 0.239 3.761 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.548 3.452 15 O -0.569 6.569 16 C -0.167 4.167 17 H 0.124 0.876 18 C -0.132 4.132 19 C -0.132 4.132 20 H 0.104 0.896 21 C 0.103 3.897 22 N -0.857 5.857 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.333 0.667 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 7.668 3.954 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.317 5.317 5 C 0.119 3.881 6 C -0.567 4.567 7 H 0.078 0.922 8 C -0.138 4.138 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.337 3.663 15 O -0.452 6.452 16 C -0.188 4.188 17 H 0.142 0.858 18 C -0.169 4.169 19 C -0.151 4.151 20 H 0.122 0.878 21 C -0.027 4.027 22 N -0.386 5.386 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.072 7.303 3.956 9.250 hybrid contribution 0.252 -0.406 -0.504 0.694 sum -3.820 6.897 3.452 8.607 Atomic orbital electron populations 1.22156 0.95754 1.01762 1.02669 1.20818 0.94117 0.92265 0.88352 1.22198 1.00625 0.97012 1.02422 1.48263 1.46539 1.32724 1.04178 1.19447 0.88182 0.82354 0.98154 1.21427 0.93527 0.90958 1.50833 0.92196 1.24925 0.94854 0.99104 0.94948 1.69910 1.06990 1.26619 1.49803 0.86607 0.79816 0.82517 0.78842 1.20226 1.21223 1.20041 1.19483 0.79064 0.83744 0.84006 1.90494 1.41227 1.26932 1.86515 1.22230 1.00969 1.04103 0.91492 0.85805 1.22825 0.97834 0.94810 1.01455 1.22291 1.01608 0.96429 0.94741 0.87837 1.21405 0.98208 0.95683 0.87398 1.58814 1.21251 1.44980 1.13591 0.90601 0.93008 0.92738 0.89958 0.93250 0.92848 0.90841 0.94481 0.94886 0.92556 0.88931 0.88345 0.93404 0.90781 0.85573 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.13 37.16 0.34 -2.57 16 2 C 0.15 2.76 3.27 -67.93 -0.22 2.54 16 3 C -0.16 -2.71 9.18 37.16 0.34 -2.37 16 4 N -0.59 -12.27 2.41 -167.47 -0.40 -12.68 16 5 C 0.24 5.66 4.88 -5.19 -0.03 5.63 16 6 C -0.53 -13.65 9.38 -34.44 -0.32 -13.97 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 14 C 0.55 11.11 6.81 -10.99 -0.07 11.04 16 15 O -0.57 -11.61 9.35 5.56 0.05 -11.56 16 16 C -0.17 -3.12 5.26 -91.77 -0.48 -3.60 16 17 H 0.12 2.39 6.56 -51.93 -0.34 2.05 16 18 C -0.13 -2.30 9.88 -26.73 -0.26 -2.57 16 19 C -0.13 -2.12 5.95 -90.61 -0.54 -2.66 16 20 H 0.10 1.50 8.13 -51.93 -0.42 1.08 16 21 C 0.10 1.61 5.34 -3.82 -0.02 1.59 16 22 N -0.86 -11.07 9.62 -10.37 -0.10 -11.17 16 23 H 0.08 1.44 5.92 -51.93 -0.31 1.13 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.54 7.83 -51.93 -0.41 1.14 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.31 6.30 -51.93 -0.33 0.99 16 30 H 0.04 0.91 6.17 -51.93 -0.32 0.59 16 31 H 0.03 0.83 7.96 -51.93 -0.41 0.41 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.09 1.67 8.03 -51.93 -0.42 1.26 16 34 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.05 0.82 6.79 -51.93 -0.35 0.47 16 36 H 0.07 1.30 7.41 -51.93 -0.38 0.92 16 37 H 0.33 3.74 8.98 -39.29 -0.35 3.39 16 38 H 0.34 3.75 9.08 -39.29 -0.36 3.39 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -27.44 306.07 -7.55 -34.99 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.06 Total: 9.46 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.37 Total: -5.34 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.23 Total: -47.77 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.05 Total: -11.56 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.44 -7.55 -34.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715079022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.220 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds