Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46956 * 2 1 4 4 N 1.46497 * 109.47514 * 119.99934 * 2 1 3 5 5 C 1.46505 * 119.99793 * 124.28630 * 4 2 1 6 6 C 1.50694 * 109.47100 * 270.00399 * 5 4 2 7 7 H 1.07999 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99596 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00134 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99792 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46825 * 59.99950 * 10 8 6 12 12 H 1.48498 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47284 * 299.99895 * 10 8 6 14 14 C 1.34777 * 120.00114 * 304.29312 * 4 2 1 15 15 O 1.21279 * 119.99708 * 354.48399 * 14 4 2 16 16 C 1.50699 * 119.99776 * 174.48733 * 14 4 2 17 17 H 1.08996 * 115.55023 * 39.05783 * 16 14 4 18 18 C 1.53002 * 117.49637 * 253.34452 * 16 14 4 19 19 C 1.53005 * 117.49476 * 184.72395 * 16 14 4 20 20 H 1.08998 * 117.49770 * 215.00215 * 19 16 14 21 21 C 1.53002 * 117.50046 * 0.02562 * 19 16 14 22 22 N 1.46897 * 109.46863 * 184.99567 * 21 19 16 23 23 H 1.08996 * 109.46867 * 295.20633 * 1 2 3 24 24 H 1.08998 * 109.47662 * 55.21087 * 1 2 3 25 25 H 1.09000 * 109.46926 * 175.21018 * 1 2 3 26 26 H 1.08997 * 109.47149 * 240.00665 * 2 1 3 27 27 H 1.09000 * 109.47088 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46702 * 300.00304 * 3 2 1 29 29 H 1.09003 * 109.47030 * 60.00216 * 3 2 1 30 30 H 1.08993 * 109.46670 * 150.00243 * 5 4 2 31 31 H 1.08997 * 109.46607 * 30.00203 * 5 4 2 32 32 H 0.97001 * 119.99926 * 180.02562 * 9 8 6 33 33 H 1.08996 * 117.49685 * 0.02562 * 18 16 14 34 34 H 1.09007 * 117.49360 * 145.02414 * 18 16 14 35 35 H 1.08995 * 109.46636 * 304.99814 * 21 19 16 36 36 H 1.09001 * 109.46892 * 64.99480 * 21 19 16 37 37 H 1.00900 * 111.00274 * 56.04715 * 22 21 19 38 38 H 1.00901 * 110.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.9365 -1.8246 1.0637 6 6 2.1446 -3.1022 0.9569 7 1 1.0654 -3.0726 0.9853 8 6 2.7979 -4.3091 0.8240 9 7 4.1121 -4.3452 0.7899 10 14 1.8162 -5.8930 0.6924 11 1 0.9326 -5.8301 -0.4996 12 1 2.7468 -7.0424 0.5580 13 1 0.9888 -6.0655 1.9134 14 6 1.6231 -0.2827 2.4184 15 8 0.9444 0.7156 2.5343 16 6 2.0246 -1.0673 3.6408 17 1 3.0393 -1.4652 3.6317 18 6 0.9439 -1.9022 4.3308 19 6 1.4540 -0.6178 4.9875 20 1 2.0934 -0.7201 5.8643 21 6 0.5191 0.5933 4.9898 22 7 0.1735 0.9423 6.3742 23 1 -0.3633 0.4376 0.9298 24 1 -0.3634 0.5863 -0.8439 25 1 -0.3633 -1.0241 -0.0858 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.5850 -1.8710 1.9385 31 1 3.5438 -1.6975 0.1675 32 1 4.5716 -5.1943 0.6960 33 1 -0.0573 -1.8843 3.9002 34 1 1.2476 -2.8498 4.7757 35 1 1.0183 1.4384 4.5158 36 1 -0.3895 0.3520 4.4382 37 1 1.0035 1.1077 6.9235 38 1 -0.4441 1.7398 6.4026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715079022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = -33.653198 kcal Electronic energy + Delta-G solvation = -18246.036049 eV Core-core repulsion = 15509.355478 eV Total energy + Delta-G solvation = -2736.680570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28797 -38.40746 -36.65982 -35.00859 -34.35135 -32.98756 -28.89479 -28.03384 -26.47753 -25.31924 -24.63963 -22.52733 -21.61311 -19.34599 -18.52080 -17.78846 -17.21978 -16.47158 -16.40052 -15.96184 -15.61637 -15.13565 -14.75220 -14.55016 -14.29939 -14.02101 -13.75482 -13.47928 -13.28476 -13.18028 -12.80540 -12.70788 -12.62909 -12.26137 -12.17657 -12.10453 -11.74948 -11.63896 -11.18464 -11.08451 -10.59775 -10.27459 -9.45493 -9.32563 -8.17595 -6.31016 1.42571 1.43124 1.50668 1.72420 2.27981 2.45186 2.95572 3.12523 3.54285 3.70901 4.03268 4.06892 4.23219 4.27743 4.29794 4.40953 4.46859 4.71097 4.75598 4.79549 4.90362 4.93606 4.95816 4.99982 5.04106 5.10507 5.21557 5.33177 5.41017 5.42013 5.70418 5.98159 6.09642 6.27655 6.63207 6.68321 6.87451 7.36518 7.49005 8.87781 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.008833 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.681388 B = 3169.292227 C = 4051.413161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.594 5.594 5 C 0.254 3.746 6 C -0.533 4.533 7 H 0.051 0.949 8 C 0.021 3.979 9 N -0.923 5.923 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.544 3.456 15 O -0.571 6.571 16 C -0.189 4.189 17 H 0.114 0.886 18 C -0.134 4.134 19 C -0.108 4.108 20 H 0.127 0.873 21 C 0.113 3.887 22 N -0.853 5.853 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.346 0.654 38 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 7.917 4.460 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.324 5.324 5 C 0.133 3.867 6 C -0.571 4.571 7 H 0.069 0.931 8 C -0.179 4.179 9 N -0.563 5.563 10 Si 0.778 3.222 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.333 3.667 15 O -0.453 6.453 16 C -0.210 4.210 17 H 0.132 0.868 18 C -0.172 4.172 19 C -0.127 4.127 20 H 0.144 0.856 21 C -0.017 4.017 22 N -0.385 5.385 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.159 0.841 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.868 7.580 4.474 10.059 hybrid contribution 0.481 -0.423 -0.655 0.916 sum -4.388 7.158 3.819 9.223 Atomic orbital electron populations 1.22057 0.94836 1.01208 1.03190 1.21064 0.94884 0.93315 0.87369 1.22081 1.00397 0.95422 1.03131 1.48264 1.46479 1.32318 1.05339 1.19062 0.88141 0.82833 0.96658 1.21575 0.93156 0.91973 1.50437 0.93065 1.25609 0.95645 1.01928 0.94675 1.70004 1.08253 1.27364 1.50690 0.85698 0.78572 0.79083 0.78896 1.19923 1.20813 1.19512 1.19739 0.78887 0.83824 0.84209 1.90492 1.41263 1.26967 1.86599 1.22213 1.00823 1.05569 0.92400 0.86775 1.22863 0.96887 0.95907 1.01507 1.22398 1.00809 0.95646 0.93860 0.85563 1.21140 0.96897 0.94923 0.88725 1.58732 1.22096 1.45883 1.11778 0.92029 0.89960 0.94229 0.90377 0.93488 0.89911 0.92220 0.95621 0.96624 0.92450 0.89841 0.87420 0.94766 0.92793 0.84118 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 9.13 71.98 0.66 -4.66 16 2 C 0.14 5.03 3.27 45.00 0.15 5.18 16 3 C -0.15 -4.83 9.18 71.98 0.66 -4.17 16 4 N -0.59 -25.08 2.41 -802.15 -1.93 -27.01 16 5 C 0.25 12.30 4.88 85.63 0.42 12.72 16 6 C -0.53 -27.73 9.38 25.60 0.24 -27.49 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.12 5.46 84.66 0.46 1.58 16 9 N -0.92 -51.17 13.29 21.45 0.28 -50.89 16 10 Si 0.95 41.99 29.54 68.60 2.03 44.01 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.54 22.16 6.81 87.66 0.60 22.76 16 15 O -0.57 -23.21 9.35 -3.03 -0.03 -23.24 16 16 C -0.19 -7.06 5.26 -11.54 -0.06 -7.12 16 17 H 0.11 4.48 6.56 -2.39 -0.02 4.46 16 18 C -0.13 -4.61 9.88 30.60 0.30 -4.31 16 19 C -0.11 -3.34 5.95 -10.79 -0.06 -3.41 16 20 H 0.13 3.34 8.13 -2.39 -0.02 3.32 16 21 C 0.11 3.43 5.34 86.30 0.46 3.89 16 22 N -0.85 -20.16 9.62 -186.73 -1.80 -21.96 16 23 H 0.06 2.29 5.92 -2.39 -0.01 2.28 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 2.92 7.83 -2.39 -0.02 2.90 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 2.07 6.30 -2.39 -0.02 2.05 16 30 H 0.03 1.30 6.17 -2.39 -0.01 1.29 16 31 H 0.02 0.81 7.96 -2.39 -0.02 0.79 16 32 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 34 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 35 H 0.03 1.14 6.79 -2.39 -0.02 1.12 16 36 H 0.05 1.86 7.41 -2.39 -0.02 1.84 16 37 H 0.35 6.84 8.98 -89.69 -0.81 6.03 16 38 H 0.35 7.01 9.08 -89.69 -0.81 6.19 16 Total: -1.00 -57.59 306.07 1.82 -55.77 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.56 Total: 28.33 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 3.82 Total: -5.02 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.44 Total: -99.85 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.03 Total: -23.24 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -57.59 1.82 -55.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715079022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.120 kcal (2) G-P(sol) polarization free energy of solvation -57.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds