Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47131 * 2 1 4 4 N 1.28016 * 119.99662 * 274.63761 * 3 2 1 5 5 N 1.40098 * 120.00210 * 5.32199 * 4 3 2 6 6 C 1.46502 * 120.00242 * 185.20286 * 5 4 3 7 7 H 1.09000 * 109.46667 * 29.99943 * 6 5 4 8 8 C 1.52996 * 109.46877 * 270.00474 * 6 5 4 9 9 C 1.50698 * 109.47216 * 150.00116 * 6 5 4 10 10 H 1.07998 * 119.99847 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99824 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00197 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 119.99631 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47148 * 90.00427 * 13 11 9 15 15 H 1.48504 * 109.46877 * 210.00264 * 13 11 9 16 16 H 1.48498 * 109.47551 * 329.99757 * 13 11 9 17 17 C 1.50700 * 120.00379 * 94.63922 * 3 2 1 18 18 H 1.09001 * 110.80257 * 305.69863 * 17 3 2 19 19 C 1.54811 * 110.90669 * 182.07230 * 17 3 2 20 20 C 1.54105 * 104.18494 * 220.91872 * 19 17 3 21 21 O 1.43733 * 107.29465 * 357.97211 * 20 19 17 22 22 C 1.44420 * 107.00339 * 26.48918 * 21 20 19 23 23 H 1.09000 * 109.47777 * 300.54873 * 1 2 3 24 24 H 1.08999 * 109.47267 * 60.55387 * 1 2 3 25 25 H 1.09006 * 109.47565 * 180.54804 * 1 2 3 26 26 H 1.09002 * 109.47353 * 239.99785 * 2 1 3 27 27 H 1.09007 * 109.46879 * 119.99745 * 2 1 3 28 28 H 0.97003 * 119.99814 * 5.21013 * 5 4 3 29 29 H 1.09003 * 109.47910 * 59.99868 * 8 6 5 30 30 H 1.09008 * 109.47035 * 180.02562 * 8 6 5 31 31 H 1.09005 * 109.47464 * 299.99419 * 8 6 5 32 32 H 0.97003 * 120.00009 * 179.97438 * 12 11 9 33 33 H 1.08992 * 110.49039 * 339.59722 * 19 17 3 34 34 H 1.09006 * 110.48689 * 102.11367 * 19 17 3 35 35 H 1.09004 * 109.87503 * 117.39821 * 20 19 17 36 36 H 1.09006 * 109.87634 * 238.54618 * 20 19 17 37 37 H 1.09005 * 110.65614 * 201.48568 * 22 21 20 38 38 H 1.08996 * 110.60422 * 78.47094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1611 2.0541 -1.1051 5 7 1.7310 1.4679 -2.3026 6 6 1.9811 2.1417 -3.5792 7 1 2.8959 2.7299 -3.5064 8 6 0.8060 3.0649 -3.9073 9 6 2.1310 1.1125 -4.6697 10 1 2.0479 0.0615 -4.4353 11 6 2.3732 1.5126 -5.9667 12 7 2.4739 2.7924 -6.2521 13 14 2.5584 0.2367 -7.3184 14 1 1.2293 -0.0465 -7.9172 15 1 3.4732 0.7556 -8.3669 16 1 3.1200 -1.0132 -6.7460 17 6 2.3830 2.0961 1.3008 18 1 1.5465 2.0510 1.9982 19 6 2.8245 3.5605 1.0615 20 6 4.0183 3.7558 2.0162 21 8 4.1841 2.5306 2.7492 22 6 3.6567 1.4696 1.9234 23 1 -0.3634 0.5223 0.8850 24 1 -0.3634 0.5052 -0.8949 25 1 -0.3634 -1.0276 0.0098 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 1.2676 0.6159 -2.2866 29 1 0.6975 3.8095 -3.1186 30 1 0.9918 3.5660 -4.8574 31 1 -0.1089 2.4768 -3.9801 32 1 2.6447 3.0738 -7.1646 33 1 3.1366 3.7006 0.0267 34 1 2.0167 4.2482 1.3119 35 1 4.9203 3.9696 1.4428 36 1 3.8117 4.5749 2.7052 37 1 3.4000 0.6014 2.5303 38 1 4.3704 1.1981 1.1456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = -17.631121 kcal Electronic energy + Delta-G solvation = -17610.371980 eV Core-core repulsion = 14874.386179 eV Total energy + Delta-G solvation = -2735.985801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42931 -37.22438 -34.64274 -32.38095 -31.83124 -30.34969 -29.14456 -26.88022 -25.21799 -23.75976 -22.78812 -21.38700 -20.34736 -18.66899 -16.79849 -16.46616 -15.74777 -15.34034 -14.98166 -14.79354 -14.19728 -13.71155 -13.32876 -13.06093 -12.63401 -12.46617 -12.18384 -11.96436 -11.70507 -11.35340 -11.16965 -11.10981 -11.02291 -10.84336 -10.79601 -10.42872 -10.28750 -10.19362 -10.05476 -9.58375 -9.22071 -8.96728 -8.51206 -6.86082 -6.13485 -4.21738 2.90869 3.23244 3.29945 3.32440 3.85453 4.07305 4.36772 4.79580 4.92595 5.06711 5.18692 5.22470 5.26090 5.38544 5.48090 5.56981 5.68288 5.80592 5.85432 5.96830 5.99619 6.07696 6.19834 6.24330 6.42828 6.49947 6.78966 6.95899 7.02142 7.10866 7.19070 7.59101 7.80411 7.89255 8.18894 8.35860 8.87604 9.43835 9.46490 10.92128 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029618 B = 0.005527 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.138087 B = 5064.496851 C = 5391.684453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.005 4.005 4 N -0.204 5.204 5 N -0.634 5.634 6 C 0.299 3.701 7 H 0.038 0.962 8 C -0.148 4.148 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.067 3.933 12 N -0.886 5.886 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.042 4.042 18 H 0.089 0.911 19 C -0.151 4.151 20 C 0.047 3.953 21 O -0.385 6.385 22 C 0.057 3.943 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.369 0.631 29 H 0.012 0.988 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -1.891 13.380 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.198 4.198 4 N -0.014 5.014 5 N -0.371 5.371 6 C 0.196 3.804 7 H 0.056 0.944 8 C -0.207 4.207 9 C -0.569 4.569 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.729 3.271 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.062 4.062 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.030 4.030 21 O -0.304 6.304 22 C -0.021 4.021 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.206 0.794 29 H 0.031 0.969 30 H 0.106 0.894 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.699 -0.802 12.817 12.861 hybrid contribution -0.544 -1.729 -0.884 2.016 sum -1.243 -2.531 11.933 12.262 Atomic orbital electron populations 1.21705 0.95252 1.01311 1.02196 1.20796 0.96199 0.95003 1.02624 1.23516 1.08823 0.94453 0.93022 1.73358 1.08383 1.26041 0.93574 1.48932 1.63253 1.23900 1.01038 1.18447 0.94096 0.91409 0.76437 0.94413 1.22181 0.98493 0.98593 1.01477 1.21255 1.50251 0.92943 0.92429 0.92401 1.24854 0.94823 0.95525 0.98425 1.69892 1.48454 1.14056 1.19998 0.86453 0.78042 0.81328 0.81317 1.20543 1.21028 1.19928 1.21179 0.97975 0.94211 0.92883 0.89258 1.22969 0.97824 0.95892 1.02209 1.23180 0.97826 0.87557 0.94390 1.88816 1.83252 1.16357 1.41926 1.23591 0.93659 0.90816 0.93997 0.92665 0.92509 0.92779 0.91345 0.91230 0.79352 0.96914 0.89370 0.95703 0.92613 0.88243 0.90895 0.92483 0.90300 0.89109 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.74 37.15 0.36 -1.52 16 2 C -0.11 -1.47 5.38 -27.89 -0.15 -1.62 16 3 C 0.00 -0.07 5.69 -78.91 -0.45 -0.52 16 4 N -0.20 -4.00 9.61 35.60 0.34 -3.66 16 5 N -0.63 -13.83 5.81 -5.88 -0.03 -13.86 16 6 C 0.30 7.59 3.23 -69.08 -0.22 7.37 16 7 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.15 -3.65 9.29 37.16 0.35 -3.31 16 9 C -0.53 -14.24 8.74 -34.44 -0.30 -14.54 16 10 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 11 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 12 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 13 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.04 -0.56 3.43 -89.76 -0.31 -0.87 16 18 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.15 -2.05 6.43 -25.20 -0.16 -2.22 16 20 C 0.05 0.59 7.70 37.73 0.29 0.88 16 21 O -0.38 -5.36 11.52 -35.23 -0.41 -5.76 16 22 C 0.06 0.73 6.98 38.21 0.27 0.99 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.85 7.37 -51.93 -0.38 0.46 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.06 6.92 -51.93 -0.36 0.70 16 27 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 28 H 0.37 7.62 5.84 -182.60 -1.07 6.56 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 2.34 6.07 -51.92 -0.32 2.03 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 1.60 6.69 -51.93 -0.35 1.25 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.86 8.04 -51.93 -0.42 0.45 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -28.22 307.43 -7.35 -35.58 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.07 Total: 5.06 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.42 Total: -13.65 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.94 Total: -41.62 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.41 Total: -5.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.22 -7.35 -35.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.947 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds