Wall clock time and date at job start Mon Mar 30 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47131 * 2 1 4 4 N 1.28016 * 119.99662 * 274.63761 * 3 2 1 5 5 N 1.40098 * 120.00210 * 5.32199 * 4 3 2 6 6 C 1.46502 * 120.00242 * 185.20286 * 5 4 3 7 7 H 1.09000 * 109.46667 * 29.99943 * 6 5 4 8 8 C 1.52996 * 109.46877 * 270.00474 * 6 5 4 9 9 C 1.50698 * 109.47216 * 150.00116 * 6 5 4 10 10 H 1.07998 * 119.99847 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99824 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00197 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 119.99631 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47148 * 90.00427 * 13 11 9 15 15 H 1.48504 * 109.46877 * 210.00264 * 13 11 9 16 16 H 1.48498 * 109.47551 * 329.99757 * 13 11 9 17 17 C 1.50700 * 120.00379 * 94.63922 * 3 2 1 18 18 H 1.09001 * 110.80257 * 305.69863 * 17 3 2 19 19 C 1.54811 * 110.90669 * 182.07230 * 17 3 2 20 20 C 1.54105 * 104.18494 * 220.91872 * 19 17 3 21 21 O 1.43733 * 107.29465 * 357.97211 * 20 19 17 22 22 C 1.44420 * 107.00339 * 26.48918 * 21 20 19 23 23 H 1.09000 * 109.47777 * 300.54873 * 1 2 3 24 24 H 1.08999 * 109.47267 * 60.55387 * 1 2 3 25 25 H 1.09006 * 109.47565 * 180.54804 * 1 2 3 26 26 H 1.09002 * 109.47353 * 239.99785 * 2 1 3 27 27 H 1.09007 * 109.46879 * 119.99745 * 2 1 3 28 28 H 0.97003 * 119.99814 * 5.21013 * 5 4 3 29 29 H 1.09003 * 109.47910 * 59.99868 * 8 6 5 30 30 H 1.09008 * 109.47035 * 180.02562 * 8 6 5 31 31 H 1.09005 * 109.47464 * 299.99419 * 8 6 5 32 32 H 0.97003 * 120.00009 * 179.97438 * 12 11 9 33 33 H 1.08992 * 110.49039 * 339.59722 * 19 17 3 34 34 H 1.09006 * 110.48689 * 102.11367 * 19 17 3 35 35 H 1.09004 * 109.87503 * 117.39821 * 20 19 17 36 36 H 1.09006 * 109.87634 * 238.54618 * 20 19 17 37 37 H 1.09005 * 110.65614 * 201.48568 * 22 21 20 38 38 H 1.08996 * 110.60422 * 78.47094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1611 2.0541 -1.1051 5 7 1.7310 1.4679 -2.3026 6 6 1.9811 2.1417 -3.5792 7 1 2.8959 2.7299 -3.5064 8 6 0.8060 3.0649 -3.9073 9 6 2.1310 1.1125 -4.6697 10 1 2.0479 0.0615 -4.4353 11 6 2.3732 1.5126 -5.9667 12 7 2.4739 2.7924 -6.2521 13 14 2.5584 0.2367 -7.3184 14 1 1.2293 -0.0465 -7.9172 15 1 3.4732 0.7556 -8.3669 16 1 3.1200 -1.0132 -6.7460 17 6 2.3830 2.0961 1.3008 18 1 1.5465 2.0510 1.9982 19 6 2.8245 3.5605 1.0615 20 6 4.0183 3.7558 2.0162 21 8 4.1841 2.5306 2.7492 22 6 3.6567 1.4696 1.9234 23 1 -0.3634 0.5223 0.8850 24 1 -0.3634 0.5052 -0.8949 25 1 -0.3634 -1.0276 0.0098 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 1.2676 0.6159 -2.2866 29 1 0.6975 3.8095 -3.1186 30 1 0.9918 3.5660 -4.8574 31 1 -0.1089 2.4768 -3.9801 32 1 2.6447 3.0738 -7.1646 33 1 3.1366 3.7006 0.0267 34 1 2.0167 4.2482 1.3119 35 1 4.9203 3.9696 1.4428 36 1 3.8117 4.5749 2.7052 37 1 3.4000 0.6014 2.5303 38 1 4.3704 1.1981 1.1456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:38 Heat of formation + Delta-G solvation = -35.104983 kcal Electronic energy + Delta-G solvation = -17611.129704 eV Core-core repulsion = 14874.386179 eV Total energy + Delta-G solvation = -2736.743524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54726 -38.61108 -36.43685 -34.06156 -32.94140 -31.99881 -30.23492 -28.50197 -27.27968 -24.95873 -23.91998 -22.58173 -22.11390 -20.13448 -18.50221 -17.53625 -17.30485 -16.75612 -16.54002 -15.94055 -15.59201 -15.00390 -14.86262 -14.35788 -14.20046 -13.85820 -13.73699 -13.24922 -13.00041 -12.92769 -12.83279 -12.70176 -12.38071 -12.26059 -12.16609 -12.08952 -11.92249 -11.66866 -11.47828 -11.06485 -10.66322 -10.57870 -10.46776 -8.50846 -8.17080 -6.34910 1.41360 1.41779 1.52294 1.56825 2.25678 2.50990 3.02296 3.10708 3.70014 3.76154 4.02574 4.13223 4.20437 4.35286 4.42282 4.46790 4.51797 4.74475 4.81129 4.89081 4.92154 4.94751 4.98384 5.03145 5.07302 5.14916 5.15779 5.32764 5.36715 5.45600 5.60868 5.84695 5.92098 5.93347 6.24939 6.47262 6.88985 7.37456 7.94209 8.86876 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029618 B = 0.005527 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.138087 B = 5064.496851 C = 5391.684453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.030 3.970 4 N -0.251 5.251 5 N -0.649 5.649 6 C 0.309 3.691 7 H -0.004 1.004 8 C -0.133 4.133 9 C -0.547 4.547 10 H 0.057 0.943 11 C 0.019 3.981 12 N -0.914 5.914 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.270 1.270 17 C -0.044 4.044 18 H 0.118 0.882 19 C -0.153 4.153 20 C 0.048 3.952 21 O -0.394 6.394 22 C 0.060 3.940 23 H 0.071 0.929 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.372 0.628 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 -3.282 15.183 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.165 4.165 4 N -0.059 5.059 5 N -0.387 5.387 6 C 0.205 3.795 7 H 0.014 0.986 8 C -0.192 4.192 9 C -0.586 4.586 10 H 0.075 0.925 11 C -0.181 4.181 12 N -0.553 5.553 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.065 4.065 18 H 0.136 0.864 19 C -0.191 4.191 20 C -0.028 4.028 21 O -0.313 6.313 22 C -0.017 4.017 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.210 0.790 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.220 -2.194 14.638 14.852 hybrid contribution -0.351 -1.292 -1.241 1.826 sum -1.572 -3.486 13.397 13.932 Atomic orbital electron populations 1.21662 0.94009 1.02628 1.01646 1.20911 0.97189 0.93481 1.03387 1.24308 1.03992 0.95213 0.92938 1.73443 1.11438 1.27255 0.93758 1.48406 1.65215 1.24111 1.00919 1.18011 0.92315 0.90972 0.78213 0.98600 1.21985 0.98385 0.98454 1.00379 1.21534 1.50551 0.93182 0.93322 0.92458 1.25699 0.94315 0.97456 1.00664 1.70019 1.48901 1.15811 1.20559 0.85403 0.78236 0.78782 0.78249 1.19664 1.20683 1.19471 1.21391 0.99478 0.93820 0.91809 0.86419 1.22936 0.98773 0.96607 1.00740 1.23237 0.97087 0.87918 0.94579 1.88815 1.83420 1.16859 1.42180 1.23623 0.92555 0.91470 0.94077 0.91010 0.95147 0.90675 0.93144 0.87838 0.78998 0.96366 0.91561 0.95419 0.92456 0.91349 0.89670 0.92947 0.87964 0.86098 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.74 71.98 0.70 -2.58 16 2 C -0.11 -2.80 5.38 29.84 0.16 -2.64 16 3 C 0.03 0.92 5.69 46.53 0.26 1.18 16 4 N -0.25 -10.05 9.61 -41.20 -0.40 -10.44 16 5 N -0.65 -29.17 5.81 -172.53 -1.00 -30.17 16 6 C 0.31 16.39 3.23 44.24 0.14 16.54 16 7 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 8 C -0.13 -6.77 9.29 71.98 0.67 -6.10 16 9 C -0.55 -30.15 8.74 25.60 0.22 -29.93 16 10 H 0.06 3.08 7.79 -2.91 -0.02 3.06 16 11 C 0.02 1.03 5.30 84.65 0.45 1.48 16 12 N -0.91 -52.31 11.32 21.45 0.24 -52.07 16 13 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 C -0.04 -1.07 3.43 -10.24 -0.04 -1.11 16 18 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 19 C -0.15 -3.97 6.43 31.59 0.20 -3.76 16 20 C 0.05 1.12 7.70 72.36 0.56 1.68 16 21 O -0.39 -9.94 11.52 -148.98 -1.72 -11.65 16 22 C 0.06 1.37 6.98 72.67 0.51 1.87 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.03 0.86 7.37 -2.39 -0.02 0.85 16 25 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.51 6.92 -2.39 -0.02 1.49 16 27 H 0.10 1.96 7.94 -2.38 -0.02 1.94 16 28 H 0.37 15.72 5.84 -213.32 -1.25 14.48 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 3.66 6.07 -2.38 -0.01 3.64 16 31 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.07 2.24 6.69 -2.39 -0.02 2.23 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 36 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.12 2.02 8.14 -2.38 -0.02 2.01 16 38 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 Total: -1.00 -62.37 307.43 2.78 -59.58 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.21 Total: 23.20 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.84 Total: -23.37 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -1.16 Total: -92.68 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.72 Total: -11.65 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -62.37 2.78 -59.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -62.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds