Wall clock time and date at job start Mon Mar 30 2020 03:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46900 * 109.47061 * 174.86373 * 3 2 1 5 5 C 1.47902 * 111.00278 * 175.71133 * 4 3 2 6 6 C 1.53996 * 107.05747 * 214.15625 * 5 4 3 7 7 C 1.54592 * 105.13976 * 1.21828 * 6 5 4 8 8 H 1.09001 * 110.72581 * 263.59954 * 7 6 5 9 9 C 1.53004 * 110.72279 * 140.49630 * 7 6 5 10 10 N 1.46504 * 109.46962 * 66.45295 * 9 7 6 11 11 C 1.34779 * 119.99911 * 180.02562 * 10 9 7 12 12 O 1.21686 * 119.99685 * 0.02562 * 11 10 9 13 13 C 1.46377 * 119.99617 * 180.02562 * 11 10 9 14 14 H 1.07995 * 120.00028 * 359.97438 * 13 11 10 15 15 C 1.40043 * 119.99459 * 180.02562 * 13 11 10 16 16 N 1.30673 * 120.00175 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00065 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47231 * 59.99378 * 17 15 13 19 19 H 1.48500 * 109.47383 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47050 * 299.99701 * 17 15 13 21 21 C 1.48531 * 111.00265 * 58.30897 * 4 3 2 22 22 H 1.09008 * 109.46741 * 300.00139 * 1 2 3 23 23 H 1.08994 * 109.47095 * 59.99890 * 1 2 3 24 24 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46830 * 240.00296 * 2 1 3 26 26 H 1.08995 * 109.47619 * 120.00146 * 2 1 3 27 27 H 1.09003 * 109.46781 * 294.85595 * 3 2 1 28 28 H 1.08997 * 109.47098 * 54.85963 * 3 2 1 29 29 H 1.09005 * 109.90884 * 333.50456 * 5 4 3 30 30 H 1.08994 * 109.92133 * 94.59896 * 5 4 3 31 31 H 1.08996 * 110.30755 * 120.13678 * 6 5 4 32 32 H 1.09000 * 110.30431 * 242.20664 * 6 5 4 33 33 H 1.08996 * 109.46847 * 186.45263 * 9 7 6 34 34 H 1.08994 * 109.47027 * 306.45596 * 9 7 6 35 35 H 0.97005 * 119.99566 * 0.02562 * 10 9 7 36 36 H 0.97010 * 119.99872 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.67125 * 278.15610 * 21 4 3 38 38 H 1.09004 * 110.66797 * 41.29205 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.0424 2.8183 0.0248 6 6 5.4064 2.7187 -0.6831 7 6 5.5868 1.2169 -1.0025 8 1 6.1871 0.7286 -0.2349 9 6 6.2197 1.0292 -2.3828 10 7 7.5914 1.5437 -2.3651 11 6 8.3479 1.4840 -3.4789 12 8 7.8915 1.0033 -4.4993 13 6 9.7186 1.9975 -3.4609 14 1 10.1234 2.4245 -2.5553 15 6 10.5045 1.9360 -4.6184 16 7 10.0144 1.4197 -5.7143 17 14 12.2539 2.5905 -4.5954 18 1 13.0470 1.8478 -3.5833 19 1 12.8679 2.4092 -5.9353 20 1 12.2376 4.0346 -4.2493 21 6 4.1329 0.6817 -0.9845 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7538 1.9291 -0.9325 28 1 1.6034 1.9823 0.8403 29 1 3.3653 3.4412 -0.5597 30 1 4.1680 3.2408 1.0216 31 1 5.3986 3.3029 -1.6032 32 1 6.2015 3.0646 -0.0226 33 1 6.2325 -0.0309 -2.6355 34 1 5.6374 1.5731 -3.1265 35 1 7.9550 1.9272 -1.5516 36 1 10.5590 1.3768 -6.5159 37 1 4.1191 -0.3873 -0.7723 38 1 3.6331 0.8940 -1.9297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822048686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:01 Heat of formation + Delta-G solvation = -54.160636 kcal Electronic energy + Delta-G solvation = -17109.318643 eV Core-core repulsion = 14371.748804 eV Total energy + Delta-G solvation = -2737.569840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.28369 -37.16060 -34.98993 -33.17780 -32.28804 -30.50858 -29.17739 -26.75505 -25.53209 -24.00832 -21.74166 -20.72965 -19.96477 -19.46199 -17.17756 -16.16873 -15.58780 -15.40097 -15.17865 -14.23178 -14.04785 -13.90073 -13.66218 -13.12155 -13.05952 -12.72340 -12.29150 -12.00690 -11.88533 -11.53190 -11.34596 -11.23251 -10.98674 -10.94636 -10.82441 -10.76131 -10.45026 -10.40073 -10.31152 -10.20815 -8.82258 -8.46865 -7.58827 -7.45502 -6.15880 -4.61398 3.17376 3.22017 3.24043 3.91862 4.12711 4.58845 4.62125 4.64344 4.84788 4.94976 5.05948 5.13975 5.21844 5.35766 5.38432 5.49857 5.56706 5.62802 5.69704 5.78804 5.83261 5.85323 5.93938 5.96946 6.04477 6.09195 6.20049 6.24899 6.55950 6.65690 6.87303 7.01949 7.45592 7.96766 8.14078 8.36003 9.04929 9.57985 10.63198 10.82040 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058140 B = 0.004013 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.481778 B = 6976.211566 C = 7298.418084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.047 3.953 4 N -0.520 5.520 5 C 0.037 3.963 6 C -0.125 4.125 7 C -0.100 4.100 8 H 0.084 0.916 9 C 0.143 3.857 10 N -0.766 5.766 11 C 0.554 3.446 12 O -0.583 6.583 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.043 3.957 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.380 0.620 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 0.901 11.878 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.082 4.082 4 N -0.244 5.244 5 C -0.091 4.091 6 C -0.163 4.163 7 C -0.119 4.119 8 H 0.103 0.897 9 C 0.017 3.983 10 N -0.422 5.422 11 C 0.358 3.642 12 O -0.466 6.466 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.085 4.085 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.479 0.263 11.417 17.667 hybrid contribution 0.754 0.922 -0.365 1.246 sum -12.725 1.185 11.052 16.896 Atomic orbital electron populations 1.21735 0.95706 1.01720 1.01671 1.21558 0.95458 0.96394 1.02791 1.22329 0.88274 0.97314 1.00262 1.64800 1.05096 1.11002 1.43470 1.22861 0.95877 0.89981 1.00401 1.22456 0.96337 0.96837 1.00707 1.22316 0.95607 0.95617 0.98409 0.89740 1.20825 0.85330 0.98597 0.93506 1.46096 1.12694 1.68396 1.14996 1.18208 0.85950 0.78952 0.81078 1.90594 1.74248 1.49787 1.31938 1.20858 0.96809 1.42831 0.97862 0.91509 1.25708 0.99346 0.93347 0.94831 1.70019 1.36037 1.33044 1.00710 0.86437 0.82523 0.79904 0.77869 1.19293 1.20593 1.19315 1.23199 0.93858 0.98896 0.92557 0.92756 0.92877 0.92564 0.91846 0.91088 0.94853 0.90947 0.94043 0.90603 0.90925 0.90928 0.93360 0.93592 0.78895 0.92099 0.89933 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.16 5.61 -26.73 -0.15 -1.31 16 3 C 0.05 0.48 4.84 -3.82 -0.02 0.46 16 4 N -0.52 -6.31 5.35 -230.45 -1.23 -7.54 16 5 C 0.04 0.43 6.70 -2.75 -0.02 0.41 16 6 C -0.13 -1.68 6.19 -25.38 -0.16 -1.83 16 7 C -0.10 -1.46 3.12 -88.76 -0.28 -1.74 16 8 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 9 C 0.14 2.77 5.02 -4.04 -0.02 2.75 16 10 N -0.77 -17.29 5.40 -61.72 -0.33 -17.63 16 11 C 0.55 16.03 7.75 -12.99 -0.10 15.93 16 12 O -0.58 -19.23 15.02 5.20 0.08 -19.15 16 13 C -0.55 -15.64 9.54 -35.63 -0.34 -15.98 16 14 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 15 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 16 N -0.77 -23.39 11.83 55.55 0.66 -22.74 16 17 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.04 0.56 4.81 -1.90 -0.01 0.55 16 22 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.62 7.18 -51.93 -0.37 0.25 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.35 7.97 -51.93 -0.41 -0.06 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.47 7.67 -51.93 -0.40 0.07 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.07 7.80 -51.93 -0.41 0.66 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.38 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 37 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 38 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -33.71 309.59 -8.52 -42.24 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.51 Total: 4.02 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.82 Total: 0.83 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.91 Total: -47.90 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.08 Total: -19.15 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.71 -8.52 -42.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822048686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds