Wall clock time and date at job start Mon Mar 30 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46900 * 109.47061 * 174.86373 * 3 2 1 5 5 C 1.47902 * 111.00278 * 175.71133 * 4 3 2 6 6 C 1.53996 * 107.05747 * 214.15625 * 5 4 3 7 7 C 1.54592 * 105.13976 * 1.21828 * 6 5 4 8 8 H 1.09001 * 110.72581 * 263.59954 * 7 6 5 9 9 C 1.53004 * 110.72279 * 140.49630 * 7 6 5 10 10 N 1.46504 * 109.46962 * 66.45295 * 9 7 6 11 11 C 1.34779 * 119.99911 * 180.02562 * 10 9 7 12 12 O 1.21686 * 119.99685 * 0.02562 * 11 10 9 13 13 C 1.46377 * 119.99617 * 180.02562 * 11 10 9 14 14 H 1.07995 * 120.00028 * 359.97438 * 13 11 10 15 15 C 1.40043 * 119.99459 * 180.02562 * 13 11 10 16 16 N 1.30673 * 120.00175 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00065 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47231 * 59.99378 * 17 15 13 19 19 H 1.48500 * 109.47383 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47050 * 299.99701 * 17 15 13 21 21 C 1.48531 * 111.00265 * 58.30897 * 4 3 2 22 22 H 1.09008 * 109.46741 * 300.00139 * 1 2 3 23 23 H 1.08994 * 109.47095 * 59.99890 * 1 2 3 24 24 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46830 * 240.00296 * 2 1 3 26 26 H 1.08995 * 109.47619 * 120.00146 * 2 1 3 27 27 H 1.09003 * 109.46781 * 294.85595 * 3 2 1 28 28 H 1.08997 * 109.47098 * 54.85963 * 3 2 1 29 29 H 1.09005 * 109.90884 * 333.50456 * 5 4 3 30 30 H 1.08994 * 109.92133 * 94.59896 * 5 4 3 31 31 H 1.08996 * 110.30755 * 120.13678 * 6 5 4 32 32 H 1.09000 * 110.30431 * 242.20664 * 6 5 4 33 33 H 1.08996 * 109.46847 * 186.45263 * 9 7 6 34 34 H 1.08994 * 109.47027 * 306.45596 * 9 7 6 35 35 H 0.97005 * 119.99566 * 0.02562 * 10 9 7 36 36 H 0.97010 * 119.99872 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.67125 * 278.15610 * 21 4 3 38 38 H 1.09004 * 110.66797 * 41.29205 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.0424 2.8183 0.0248 6 6 5.4064 2.7187 -0.6831 7 6 5.5868 1.2169 -1.0025 8 1 6.1871 0.7286 -0.2349 9 6 6.2197 1.0292 -2.3828 10 7 7.5914 1.5437 -2.3651 11 6 8.3479 1.4840 -3.4789 12 8 7.8915 1.0033 -4.4993 13 6 9.7186 1.9975 -3.4609 14 1 10.1234 2.4245 -2.5553 15 6 10.5045 1.9360 -4.6184 16 7 10.0144 1.4197 -5.7143 17 14 12.2539 2.5905 -4.5954 18 1 13.0470 1.8478 -3.5833 19 1 12.8679 2.4092 -5.9353 20 1 12.2376 4.0346 -4.2493 21 6 4.1329 0.6817 -0.9845 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7538 1.9291 -0.9325 28 1 1.6034 1.9823 0.8403 29 1 3.3653 3.4412 -0.5597 30 1 4.1680 3.2408 1.0216 31 1 5.3986 3.3029 -1.6032 32 1 6.2015 3.0646 -0.0226 33 1 6.2325 -0.0309 -2.6355 34 1 5.6374 1.5731 -3.1265 35 1 7.9550 1.9272 -1.5516 36 1 10.5590 1.3768 -6.5159 37 1 4.1191 -0.3873 -0.7723 38 1 3.6331 0.8940 -1.9297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822048686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:00 Heat of formation + Delta-G solvation = -79.203195 kcal Electronic energy + Delta-G solvation = -17110.404570 eV Core-core repulsion = 14371.748804 eV Total energy + Delta-G solvation = -2738.655766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43142 -39.16015 -36.23317 -34.80851 -34.27932 -31.85149 -30.28437 -28.65250 -26.74087 -25.34593 -22.69415 -22.04516 -21.26603 -21.08638 -19.17818 -17.46406 -17.23960 -16.70760 -16.31247 -15.85137 -15.71854 -15.27646 -14.92991 -14.38651 -14.09910 -14.05074 -13.74191 -13.45289 -13.12434 -12.86164 -12.73788 -12.69172 -12.62501 -12.22305 -12.10567 -11.97683 -11.83740 -11.74814 -11.54000 -11.45893 -10.91808 -9.88686 -9.49509 -9.41913 -8.29131 -6.85989 1.40569 1.44309 1.56075 2.25177 2.47139 2.91785 3.12562 3.60302 3.64782 3.81175 3.88090 4.07973 4.16528 4.28309 4.41283 4.45068 4.50039 4.62669 4.67667 4.72209 4.80099 4.83517 4.86354 4.97460 5.05694 5.17793 5.19348 5.28643 5.31597 5.32477 5.40455 5.86276 5.87835 6.09019 6.23759 6.27382 6.86426 7.55658 8.49072 8.67316 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058140 B = 0.004013 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.481778 B = 6976.211566 C = 7298.418084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.046 3.954 4 N -0.522 5.522 5 C 0.040 3.960 6 C -0.123 4.123 7 C -0.089 4.089 8 H 0.092 0.908 9 C 0.148 3.852 10 N -0.752 5.752 11 C 0.536 3.464 12 O -0.636 6.636 13 C -0.574 4.574 14 H 0.089 0.911 15 C 0.027 3.973 16 N -0.824 5.824 17 Si 1.000 3.000 18 H -0.254 1.254 19 H -0.275 1.275 20 H -0.254 1.254 21 C 0.048 3.952 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.027 0.973 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.089 0.911 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 1.829 13.868 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.082 4.082 4 N -0.246 5.246 5 C -0.088 4.088 6 C -0.162 4.162 7 C -0.109 4.109 8 H 0.111 0.889 9 C 0.022 3.978 10 N -0.406 5.406 11 C 0.340 3.660 12 O -0.523 6.523 13 C -0.611 4.611 14 H 0.107 0.893 15 C -0.188 4.188 16 N -0.453 5.453 17 Si 0.819 3.181 18 H -0.178 1.178 19 H -0.200 1.200 20 H -0.177 1.177 21 C -0.080 4.080 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.062 1.204 13.477 18.807 hybrid contribution 0.535 0.616 -0.963 1.262 sum -12.527 1.820 12.514 17.800 Atomic orbital electron populations 1.21710 0.94389 1.02305 1.02105 1.21535 0.96604 0.95613 1.02229 1.22409 0.87079 0.98105 1.00631 1.64847 1.06236 1.10998 1.42564 1.22871 0.94733 0.90015 1.01133 1.22432 0.98035 0.95288 1.00402 1.22175 0.96369 0.97146 0.95191 0.88948 1.20867 0.83668 0.96978 0.96238 1.45755 1.13471 1.67355 1.14036 1.18645 0.86992 0.78684 0.81689 1.90547 1.75428 1.52118 1.34234 1.21424 0.97168 1.43228 0.99277 0.89302 1.27017 1.05054 0.92907 0.93833 1.70195 1.38676 1.34544 1.01893 0.85040 0.74995 0.79658 0.78385 1.17761 1.19968 1.17748 1.23118 0.92612 0.99471 0.92800 0.91882 0.92872 0.91955 0.92768 0.91272 0.95191 0.89629 0.93607 0.88926 0.92668 0.89753 0.95023 0.95467 0.77070 0.91571 0.89252 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.12 -2.09 5.61 30.60 0.17 -1.92 16 3 C 0.05 0.86 4.84 86.31 0.42 1.28 16 4 N -0.52 -11.71 5.35 -883.00 -4.73 -16.43 16 5 C 0.04 0.86 6.70 86.45 0.58 1.44 16 6 C -0.12 -3.15 6.19 31.47 0.19 -2.95 16 7 C -0.09 -2.56 3.12 -9.59 -0.03 -2.59 16 8 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 9 C 0.15 5.86 5.02 86.38 0.43 6.30 16 10 N -0.75 -34.38 5.40 -467.40 -2.52 -36.90 16 11 C 0.54 31.79 7.75 86.36 0.67 32.46 16 12 O -0.64 -43.75 15.02 -4.30 -0.06 -43.82 16 13 C -0.57 -32.98 9.54 24.83 0.24 -32.75 16 14 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.51 5.50 85.30 0.47 1.98 16 16 N -0.82 -51.25 11.83 21.83 0.26 -50.99 16 17 Si 1.00 41.19 29.56 68.60 2.03 43.22 16 18 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 C 0.05 1.22 4.81 86.65 0.42 1.64 16 22 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 1.02 7.18 -2.39 -0.02 1.00 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 0.59 7.97 -2.39 -0.02 0.57 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 0.95 7.67 -2.38 -0.02 0.94 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.60 7.80 -2.39 -0.02 1.59 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.40 15.48 8.31 -92.70 -0.77 14.71 16 36 H 0.27 15.46 8.29 -92.70 -0.77 14.70 16 37 H 0.09 2.14 7.77 -2.39 -0.02 2.12 16 38 H 0.04 1.06 7.93 -2.39 -0.02 1.05 16 Total: -1.00 -74.61 309.59 -0.50 -75.11 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.25 Total: 26.22 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.27 Total: 3.60 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -6.99 Total: -104.33 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.06 Total: -43.82 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -74.61 -0.50 -75.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822048686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.098 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds