Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50707 * 109.47268 * 119.99633 * 2 1 3 5 5 O 1.21283 * 119.99809 * 93.90712 * 4 2 1 6 6 N 1.34768 * 119.99708 * 273.91462 * 4 2 1 7 7 C 1.47023 * 125.65338 * 4.84697 * 6 4 2 8 8 C 1.54313 * 107.27667 * 180.96982 * 7 6 4 9 9 C 1.55151 * 102.86734 * 22.53071 * 8 7 6 10 10 C 1.47426 * 125.64785 * 185.16190 * 6 4 2 11 11 N 1.46899 * 109.47282 * 239.99540 * 2 1 3 12 12 C 1.46901 * 111.00122 * 175.37449 * 11 2 1 13 13 C 1.46904 * 111.00003 * 51.41636 * 11 2 1 14 14 C 1.50696 * 109.47040 * 189.99969 * 13 11 2 15 15 H 1.07995 * 120.00659 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99437 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99396 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00291 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47129 * 90.00278 * 18 16 14 20 20 H 1.48502 * 109.47122 * 210.00118 * 18 16 14 21 21 H 1.48498 * 109.47085 * 329.99866 * 18 16 14 22 22 H 1.09000 * 109.47032 * 54.17258 * 1 2 3 23 23 H 1.09005 * 109.47267 * 174.17359 * 1 2 3 24 24 H 1.08997 * 109.47128 * 294.17238 * 1 2 3 25 25 H 1.08998 * 109.88325 * 300.52307 * 7 6 4 26 26 H 1.08997 * 109.87998 * 61.68356 * 7 6 4 27 27 H 1.09003 * 110.92678 * 264.11134 * 8 7 6 28 28 H 1.09008 * 110.59046 * 140.78904 * 8 7 6 29 29 H 1.08998 * 111.00920 * 206.22897 * 9 8 7 30 30 H 1.09001 * 111.00537 * 82.37008 * 9 8 7 31 31 H 1.09007 * 110.36796 * 274.67266 * 10 6 4 32 32 H 1.09000 * 110.36786 * 36.87802 * 10 6 4 33 33 H 1.08995 * 109.47178 * 56.04075 * 12 11 2 34 34 H 1.08997 * 109.46898 * 296.04121 * 12 11 2 35 35 H 1.09000 * 109.47203 * 176.04509 * 12 11 2 36 36 H 1.09000 * 109.47151 * 310.00306 * 13 11 2 37 37 H 1.09005 * 109.46358 * 69.99969 * 13 11 2 38 38 H 0.97003 * 119.99855 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 8 2.3020 -1.8918 1.1811 6 7 2.1819 -0.0328 2.3859 7 6 1.8000 1.3687 2.6129 8 6 2.1793 1.7172 4.0676 9 6 3.2753 0.6702 4.3991 10 6 2.7614 -0.5721 3.6295 11 7 2.0197 -0.6926 -1.1994 12 6 3.4840 -0.6171 -1.2899 13 6 1.3888 -0.1550 -2.4122 14 6 1.7215 -1.0397 -3.5859 15 1 2.3394 -1.9141 -3.4450 16 6 1.2370 -0.7327 -4.8397 17 7 1.5270 -1.5051 -5.8639 18 14 0.1676 0.7794 -5.0834 19 1 1.0273 1.9475 -5.4019 20 1 -0.7786 0.5413 -6.2030 21 1 -0.5961 1.0512 -3.8392 22 1 -0.3633 0.6015 -0.8332 23 1 -0.3634 -1.0224 -0.1043 24 1 -0.3633 0.4208 0.9375 25 1 2.3393 2.0165 1.9218 26 1 0.7255 1.4874 2.4735 27 1 1.3225 1.6021 4.7316 28 1 2.5815 2.7286 4.1271 29 1 3.3185 0.4757 5.4707 30 1 4.2470 0.9890 4.0220 31 1 1.9979 -1.0894 4.2107 32 1 3.5862 -1.2475 3.4020 33 1 3.9256 -1.0215 -0.3792 34 1 3.7874 0.4228 -1.4101 35 1 3.8253 -1.1967 -2.1476 36 1 0.3078 -0.1233 -2.2760 37 1 1.7611 0.8523 -2.5993 38 1 1.1858 -1.2894 -6.7460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020360912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -20.614368 kcal Electronic energy + Delta-G solvation = -17945.782421 eV Core-core repulsion = 15209.667257 eV Total energy + Delta-G solvation = -2736.115164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07010 -37.70014 -36.19456 -32.64117 -31.87109 -30.46958 -29.07684 -28.08986 -24.68211 -24.40942 -22.62516 -21.37958 -20.14361 -18.73159 -17.24367 -16.77442 -16.54692 -15.10021 -14.77128 -14.61125 -14.27196 -13.80110 -13.71828 -13.32209 -12.96648 -12.76805 -12.53695 -12.23630 -11.89422 -11.86338 -11.53763 -11.41957 -11.32369 -11.07604 -10.97532 -10.91492 -10.65548 -10.34584 -9.81649 -9.30446 -9.20763 -8.58199 -8.54448 -7.36028 -6.01941 -3.98803 2.91719 3.02465 3.28269 3.35796 3.36626 4.27945 4.36844 4.43132 4.64673 4.73805 4.94052 5.04789 5.15905 5.28985 5.39553 5.44002 5.47151 5.48352 5.58739 5.67981 5.75998 5.87106 5.90682 6.05330 6.14979 6.23910 6.37616 6.49327 6.72978 6.83055 6.98973 7.52732 7.63537 7.90006 8.00653 8.49819 8.68708 9.08765 9.58961 11.11380 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.005724 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.331144 B = 4890.244397 C = 5206.323450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.047 0.953 4 C 0.536 3.464 5 O -0.512 6.512 6 N -0.630 5.630 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.134 4.134 10 C 0.106 3.894 11 N -0.509 5.509 12 C 0.038 3.962 13 C 0.159 3.841 14 C -0.507 4.507 15 H 0.082 0.918 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.267 1.267 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.083 0.917 36 H 0.038 0.962 37 H -0.017 1.017 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 9.495 20.138 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 H 0.065 0.935 4 C 0.324 3.676 5 O -0.385 6.385 6 N -0.368 5.368 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.172 4.172 10 C -0.017 4.017 11 N -0.234 5.234 12 C -0.110 4.110 13 C 0.033 3.967 14 C -0.545 4.545 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.192 1.192 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.001 0.999 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.380 8.260 19.840 21.494 hybrid contribution -0.330 1.767 -0.338 1.829 sum 0.050 10.026 19.502 21.928 Atomic orbital electron populations 1.21830 0.92502 1.04047 1.01488 1.21533 0.97072 0.95181 0.90552 0.93522 1.20538 0.77156 0.87090 0.82796 1.90695 1.48747 1.15135 1.83905 1.48635 1.63718 1.12892 1.11517 1.22039 1.00356 0.83006 0.97031 1.22634 0.99193 0.99709 0.95383 1.22788 0.98848 0.95040 1.00506 1.22154 0.98116 0.96286 0.85116 1.61779 1.06055 1.54664 1.00892 1.22263 0.87934 0.98634 1.02193 1.20343 0.95183 0.93526 0.87608 1.21031 1.32253 1.11171 0.90057 0.89993 1.24890 0.96082 0.96472 0.95883 1.69896 1.45841 1.38186 0.99980 0.86875 0.81037 0.83787 0.78105 1.20384 1.21109 1.19207 0.90870 0.90701 0.92811 0.91456 0.91328 0.90518 0.90069 0.89930 0.90617 0.91774 0.90586 0.93233 0.97183 0.89806 0.94450 0.99918 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.45 37.16 0.31 -2.00 16 2 C 0.07 1.26 1.96 -68.86 -0.14 1.12 16 3 H 0.05 0.78 7.22 -51.93 -0.38 0.40 16 4 C 0.54 9.60 6.04 -10.99 -0.07 9.54 16 5 O -0.51 -11.25 16.12 5.55 0.09 -11.16 16 6 N -0.63 -8.52 3.33 -170.52 -0.57 -9.09 16 7 C 0.10 0.97 6.30 -3.07 -0.02 0.95 16 8 C -0.13 -0.91 6.95 -24.90 -0.17 -1.08 16 9 C -0.13 -1.00 7.08 -24.58 -0.17 -1.18 16 10 C 0.11 1.18 6.89 -2.53 -0.02 1.16 16 11 N -0.51 -11.55 4.30 -237.73 -1.02 -12.57 16 12 C 0.04 0.81 9.09 60.07 0.55 1.36 16 13 C 0.16 3.93 3.45 -4.98 -0.02 3.92 16 14 C -0.51 -14.77 9.07 -34.44 -0.31 -15.08 16 15 H 0.08 2.63 7.35 -52.49 -0.39 2.25 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 18 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 H 0.07 1.21 6.47 -51.93 -0.34 0.88 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.05 0.70 7.25 -51.93 -0.38 0.32 16 25 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 26 H 0.07 0.63 7.25 -51.93 -0.38 0.25 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.05 1.01 6.62 -51.93 -0.34 0.66 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 1.94 6.86 -51.93 -0.36 1.59 16 36 H 0.04 0.91 4.79 -51.93 -0.25 0.66 16 37 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -34.09 299.12 -7.18 -41.27 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.14 Total: -3.20 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.15 Total: 0.60 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.82 Total: -48.83 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.09 -7.18 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.652 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds