Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50707 * 109.47268 * 119.99633 * 2 1 3 5 5 O 1.21283 * 119.99809 * 93.90712 * 4 2 1 6 6 N 1.34768 * 119.99708 * 273.91462 * 4 2 1 7 7 C 1.47023 * 125.65338 * 4.84697 * 6 4 2 8 8 C 1.54313 * 107.27667 * 180.96982 * 7 6 4 9 9 C 1.55151 * 102.86734 * 22.53071 * 8 7 6 10 10 C 1.47426 * 125.64785 * 185.16190 * 6 4 2 11 11 N 1.46899 * 109.47282 * 239.99540 * 2 1 3 12 12 C 1.46901 * 111.00122 * 175.37449 * 11 2 1 13 13 C 1.46904 * 111.00003 * 51.41636 * 11 2 1 14 14 C 1.50696 * 109.47040 * 189.99969 * 13 11 2 15 15 H 1.07995 * 120.00659 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99437 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99396 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00291 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47129 * 90.00278 * 18 16 14 20 20 H 1.48502 * 109.47122 * 210.00118 * 18 16 14 21 21 H 1.48498 * 109.47085 * 329.99866 * 18 16 14 22 22 H 1.09000 * 109.47032 * 54.17258 * 1 2 3 23 23 H 1.09005 * 109.47267 * 174.17359 * 1 2 3 24 24 H 1.08997 * 109.47128 * 294.17238 * 1 2 3 25 25 H 1.08998 * 109.88325 * 300.52307 * 7 6 4 26 26 H 1.08997 * 109.87998 * 61.68356 * 7 6 4 27 27 H 1.09003 * 110.92678 * 264.11134 * 8 7 6 28 28 H 1.09008 * 110.59046 * 140.78904 * 8 7 6 29 29 H 1.08998 * 111.00920 * 206.22897 * 9 8 7 30 30 H 1.09001 * 111.00537 * 82.37008 * 9 8 7 31 31 H 1.09007 * 110.36796 * 274.67266 * 10 6 4 32 32 H 1.09000 * 110.36786 * 36.87802 * 10 6 4 33 33 H 1.08995 * 109.47178 * 56.04075 * 12 11 2 34 34 H 1.08997 * 109.46898 * 296.04121 * 12 11 2 35 35 H 1.09000 * 109.47203 * 176.04509 * 12 11 2 36 36 H 1.09000 * 109.47151 * 310.00306 * 13 11 2 37 37 H 1.09005 * 109.46358 * 69.99969 * 13 11 2 38 38 H 0.97003 * 119.99855 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 8 2.3020 -1.8918 1.1811 6 7 2.1819 -0.0328 2.3859 7 6 1.8000 1.3687 2.6129 8 6 2.1793 1.7172 4.0676 9 6 3.2753 0.6702 4.3991 10 6 2.7614 -0.5721 3.6295 11 7 2.0197 -0.6926 -1.1994 12 6 3.4840 -0.6171 -1.2899 13 6 1.3888 -0.1550 -2.4122 14 6 1.7215 -1.0397 -3.5859 15 1 2.3394 -1.9141 -3.4450 16 6 1.2370 -0.7327 -4.8397 17 7 1.5270 -1.5051 -5.8639 18 14 0.1676 0.7794 -5.0834 19 1 1.0273 1.9475 -5.4019 20 1 -0.7786 0.5413 -6.2030 21 1 -0.5961 1.0512 -3.8392 22 1 -0.3633 0.6015 -0.8332 23 1 -0.3634 -1.0224 -0.1043 24 1 -0.3633 0.4208 0.9375 25 1 2.3393 2.0165 1.9218 26 1 0.7255 1.4874 2.4735 27 1 1.3225 1.6021 4.7316 28 1 2.5815 2.7286 4.1271 29 1 3.3185 0.4757 5.4707 30 1 4.2470 0.9890 4.0220 31 1 1.9979 -1.0894 4.2107 32 1 3.5862 -1.2475 3.4020 33 1 3.9256 -1.0215 -0.3792 34 1 3.7874 0.4228 -1.4101 35 1 3.8253 -1.1967 -2.1476 36 1 0.3078 -0.1233 -2.2760 37 1 1.7611 0.8523 -2.5993 38 1 1.1858 -1.2894 -6.7460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020360912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -45.957545 kcal Electronic energy + Delta-G solvation = -17946.881383 eV Core-core repulsion = 15209.667257 eV Total energy + Delta-G solvation = -2737.214127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30373 -38.89108 -37.73225 -34.73480 -33.14652 -31.71941 -30.11590 -29.85109 -26.22637 -25.94222 -23.96245 -22.21304 -21.65526 -20.02112 -19.03163 -18.30007 -17.54058 -16.64382 -16.34678 -16.01081 -15.99435 -15.29752 -14.61096 -14.49159 -14.39845 -14.15389 -13.90592 -13.64081 -13.28368 -13.23083 -12.92021 -12.85418 -12.52911 -12.48973 -12.19725 -12.12434 -12.07930 -11.75235 -11.56571 -11.41698 -10.80563 -10.69083 -9.66165 -9.07040 -8.26707 -6.31215 1.35865 1.39291 1.49947 1.56783 1.91678 2.36444 3.04731 3.14867 3.45642 3.70225 3.88401 4.00310 4.06595 4.13689 4.29762 4.32912 4.49832 4.50283 4.62513 4.70432 4.73699 4.87898 4.89269 4.94255 4.97622 5.01782 5.10136 5.13467 5.16727 5.30823 5.43506 5.53612 5.93053 6.21545 6.44409 6.63304 6.74505 7.19151 7.31703 8.90613 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.005724 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.331144 B = 4890.244397 C = 5206.323450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.067 3.933 3 H 0.073 0.927 4 C 0.533 3.467 5 O -0.569 6.569 6 N -0.624 5.624 7 C 0.085 3.915 8 C -0.121 4.121 9 C -0.123 4.123 10 C 0.095 3.905 11 N -0.539 5.539 12 C 0.049 3.951 13 C 0.172 3.828 14 C -0.521 4.521 15 H 0.028 0.972 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.239 1.239 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.048 0.952 37 H -0.005 1.005 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 13.152 22.502 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 H 0.091 0.909 4 C 0.321 3.679 5 O -0.447 6.447 6 N -0.360 5.360 7 C -0.037 4.037 8 C -0.158 4.158 9 C -0.161 4.161 10 C -0.027 4.027 11 N -0.264 5.264 12 C -0.099 4.099 13 C 0.046 3.954 14 C -0.560 4.560 15 H 0.046 0.954 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.163 1.163 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.012 0.988 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.968 11.964 22.274 25.302 hybrid contribution 0.170 0.552 -0.988 1.144 sum -0.798 12.516 21.286 24.706 Atomic orbital electron populations 1.21823 0.91042 1.02888 1.03709 1.21650 0.98277 0.95835 0.88708 0.90901 1.20470 0.76981 0.86472 0.83954 1.90670 1.51628 1.17437 1.84986 1.48674 1.62025 1.14442 1.10811 1.22424 1.01319 0.80526 0.99386 1.22660 0.99406 1.00439 0.93318 1.22778 0.98905 0.93112 1.01298 1.22400 0.97687 0.98014 0.84601 1.61579 1.06405 1.56528 1.01904 1.22080 0.87826 0.99134 1.00908 1.20090 0.95800 0.92700 0.86838 1.21259 1.31729 1.10455 0.92533 0.95367 1.25937 0.97648 1.00478 0.95115 1.70076 1.47528 1.40816 1.00767 0.85644 0.78999 0.78758 0.79136 1.18978 1.20777 1.16253 0.90616 0.93160 0.88939 0.90884 0.90030 0.89046 0.87802 0.87459 0.90680 0.91197 0.92733 0.92773 0.95239 0.93158 0.93407 0.98777 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.45 71.98 0.61 -3.56 16 2 C 0.07 2.34 1.96 44.17 0.09 2.42 16 3 H 0.07 2.18 7.22 -2.39 -0.02 2.16 16 4 C 0.53 18.76 6.04 87.66 0.53 19.29 16 5 O -0.57 -25.77 16.12 -3.04 -0.05 -25.82 16 6 N -0.62 -15.66 3.33 -811.80 -2.70 -18.36 16 7 C 0.09 1.33 6.30 86.73 0.55 1.88 16 8 C -0.12 -1.09 6.95 31.78 0.22 -0.87 16 9 C -0.12 -1.41 7.08 31.99 0.23 -1.19 16 10 C 0.10 1.96 6.89 86.86 0.60 2.56 16 11 N -0.54 -24.62 4.30 -906.03 -3.90 -28.52 16 12 C 0.05 2.14 9.09 127.69 1.16 3.30 16 13 C 0.17 8.41 3.45 85.56 0.29 8.70 16 14 C -0.52 -31.44 9.07 25.60 0.23 -31.21 16 15 H 0.03 1.94 7.35 -2.91 -0.02 1.92 16 16 C 0.01 0.30 5.47 84.66 0.46 0.76 16 17 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 22 H 0.08 2.26 6.47 -2.39 -0.02 2.24 16 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.09 2.05 7.25 -2.39 -0.02 2.03 16 25 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 26 H 0.08 1.10 7.25 -2.39 -0.02 1.09 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 32 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.05 2.28 6.62 -2.39 -0.02 2.26 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 2.49 6.86 -2.39 -0.02 2.47 16 36 H 0.05 2.24 4.79 -2.39 -0.01 2.23 16 37 H -0.01 -0.25 7.55 -2.38 -0.02 -0.27 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -78.68 299.12 1.48 -77.21 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.97 Total: 8.64 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.97 Total: 2.08 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -6.30 Total: -107.60 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -78.68 1.48 -77.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.249 kcal (2) G-P(sol) polarization free energy of solvation -78.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds