Wall clock time and date at job start Mon Mar 30 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46991 * 2 1 4 4 C 1.46496 * 120.00246 * 274.85913 * 3 2 1 5 5 C 1.50700 * 109.47353 * 270.00244 * 4 3 2 6 6 H 1.08005 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00061 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99610 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00197 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46721 * 90.00030 * 9 7 5 11 11 H 1.48497 * 109.47177 * 210.00162 * 9 7 5 12 12 H 1.48501 * 109.46968 * 330.00299 * 9 7 5 13 13 C 1.34778 * 119.99970 * 94.86022 * 3 2 1 14 14 O 1.21283 * 119.99783 * 5.47576 * 13 3 2 15 15 C 1.50700 * 120.00203 * 185.47910 * 13 3 2 16 16 H 1.08995 * 109.45052 * 33.76342 * 15 13 3 17 17 C 1.53040 * 109.45735 * 273.79099 * 15 13 3 18 18 C 1.53119 * 109.30758 * 180.82303 * 17 15 13 19 19 C 1.53119 * 109.16046 * 57.63594 * 18 17 15 20 20 C 1.53040 * 109.27959 * 302.34303 * 19 18 17 21 21 N 1.46846 * 109.49555 * 153.71875 * 15 13 3 22 22 H 1.08998 * 109.47068 * 55.01296 * 1 2 3 23 23 H 1.09007 * 109.46895 * 175.00922 * 1 2 3 24 24 H 1.08995 * 109.47424 * 295.00906 * 1 2 3 25 25 H 1.09003 * 109.47031 * 240.00531 * 2 1 3 26 26 H 1.08999 * 109.46943 * 120.00210 * 2 1 3 27 27 H 1.09005 * 109.47316 * 29.99774 * 4 3 2 28 28 H 1.09004 * 109.47168 * 149.99843 * 4 3 2 29 29 H 0.96997 * 119.99488 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.50684 * 60.86463 * 17 15 13 31 31 H 1.08994 * 109.50126 * 300.78400 * 17 15 13 32 32 H 1.08994 * 109.52359 * 177.53759 * 18 17 15 33 33 H 1.09002 * 109.52677 * 297.67117 * 18 17 15 34 34 H 1.08993 * 109.50633 * 62.28288 * 19 18 17 35 35 H 1.09004 * 109.50530 * 182.36790 * 19 18 17 36 36 H 1.08991 * 109.46592 * 179.19321 * 20 19 18 37 37 H 1.08997 * 109.46554 * 299.16905 * 20 19 18 38 38 H 1.00897 * 110.99803 * 305.83523 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.1077 -1.2641 5 6 3.5449 1.8849 -1.8180 6 1 4.2478 1.2645 -1.2817 7 6 3.9139 2.4739 -3.0088 8 7 5.1217 2.2798 -3.4918 9 14 2.6985 3.5474 -3.9359 10 1 2.8361 4.9551 -3.4835 11 1 2.9767 3.4660 -5.3923 12 1 1.3163 3.0745 -3.6688 13 6 2.3362 1.9836 1.1630 14 8 2.3133 1.3529 2.1987 15 6 2.7200 3.4409 1.1766 16 1 2.1576 3.9715 0.4083 17 6 4.2185 3.5760 0.8967 18 6 4.6085 5.0563 0.9316 19 6 4.2338 5.6427 2.2956 20 6 2.7347 5.4485 2.5345 21 7 2.4125 4.0164 2.4922 22 1 -0.3633 0.5892 -0.8419 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3634 0.4344 0.9313 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.4215 1.7444 -1.9776 28 1 2.0063 3.1726 -1.0907 29 1 5.3811 2.6939 -4.3297 30 1 4.4437 3.1635 -0.0867 31 1 4.7809 3.0335 1.6565 32 1 5.6829 5.1537 0.7761 33 1 4.0765 5.5919 0.1454 34 1 4.7960 5.1328 3.0778 35 1 4.4706 6.7066 2.3118 36 1 2.4673 5.8521 3.5110 37 1 2.1729 5.9701 1.7598 38 1 1.4481 3.8552 2.7409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:35 Heat of formation + Delta-G solvation = -43.200701 kcal Electronic energy + Delta-G solvation = -18491.346965 eV Core-core repulsion = 15754.252384 eV Total energy + Delta-G solvation = -2737.094581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65182 -37.37443 -35.26775 -32.78119 -31.73658 -31.36089 -29.82526 -27.66192 -24.44155 -23.03285 -22.66610 -21.92921 -19.48742 -18.28252 -17.02897 -16.59211 -16.19376 -15.26866 -14.57866 -14.19219 -13.95803 -13.59687 -13.40132 -13.07982 -13.02695 -12.80807 -12.50811 -12.12673 -12.01433 -11.67801 -11.62438 -11.05757 -10.93787 -10.74007 -10.50844 -10.46774 -10.34180 -10.27968 -9.96544 -9.59795 -8.88988 -8.73985 -8.08152 -7.73564 -6.25111 -4.25398 3.13360 3.21678 3.23401 3.35163 3.73147 4.22858 4.56799 5.03828 5.12377 5.18077 5.29101 5.44368 5.54804 5.62741 5.70650 5.75542 5.80691 5.83062 5.99711 6.09639 6.21012 6.26283 6.33610 6.35107 6.47450 6.52145 6.53542 6.67605 6.78533 7.00481 7.25746 7.40537 7.43737 7.62087 8.13394 8.40282 8.80161 8.98115 9.34244 10.87008 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.011404 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.052706 B = 2454.647573 C = 3552.735287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.593 5.593 4 C 0.206 3.794 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.887 5.887 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.521 3.479 14 O -0.553 6.553 15 C 0.081 3.919 16 H 0.057 0.943 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.119 4.119 20 C 0.062 3.938 21 N -0.671 5.671 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 4.826 5.999 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.324 5.324 4 C 0.085 3.915 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.309 3.691 14 O -0.432 6.432 15 C -0.031 4.031 16 H 0.074 0.926 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.067 4.067 21 N -0.304 5.304 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.641 4.339 6.633 9.728 hybrid contribution -1.264 1.014 -1.353 2.111 sum -6.905 5.352 5.281 10.208 Atomic orbital electron populations 1.22127 0.96961 1.01413 1.01676 1.21261 0.93116 0.83700 1.03026 1.47935 1.63497 1.13636 1.07353 1.19847 0.98321 0.91919 0.81455 1.21340 0.97017 1.32230 1.06959 0.90099 1.24855 0.94970 0.95919 0.96803 1.69889 1.18323 1.43656 1.20592 0.86982 0.82224 0.81518 0.79883 1.19854 1.20842 1.18956 1.20319 0.76437 0.89156 0.83233 1.90596 1.53803 1.66174 1.32589 1.21401 0.99189 0.92396 0.90133 0.92551 1.21755 0.91978 0.96473 1.05308 1.21527 1.01191 0.96334 0.96340 1.21629 0.95610 0.99931 0.98470 1.21893 0.96641 0.88029 1.00133 1.59994 1.27763 1.13724 1.28888 0.92712 0.92180 0.93028 0.90420 0.90477 0.94946 0.95347 0.92330 0.86826 0.91730 0.91668 0.92342 0.91273 0.92136 0.91029 0.95592 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 2.05 6.22 -4.04 -0.03 2.02 16 3 N -0.59 -12.24 2.46 -175.05 -0.43 -12.67 16 4 C 0.21 4.50 4.03 -5.20 -0.02 4.48 16 5 C -0.54 -13.71 7.63 -34.44 -0.26 -13.97 16 6 H 0.08 2.33 8.02 -52.48 -0.42 1.91 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 9 Si 0.87 19.42 27.47 -169.99 -4.67 14.75 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 13 C 0.52 10.98 6.77 -10.98 -0.07 10.91 16 14 O -0.55 -12.83 16.12 5.55 0.09 -12.74 16 15 C 0.08 1.53 2.11 -68.87 -0.15 1.38 16 16 H 0.06 1.06 6.15 -51.93 -0.32 0.74 16 17 C -0.12 -2.27 5.31 -26.65 -0.14 -2.41 16 18 C -0.12 -1.89 6.00 -26.61 -0.16 -2.05 16 19 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 20 C 0.06 0.86 6.55 -3.83 -0.03 0.83 16 21 N -0.67 -11.18 6.14 -107.99 -0.66 -11.84 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 26 H 0.08 1.45 7.22 -51.93 -0.37 1.07 16 27 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 28 H 0.03 0.61 5.22 -51.93 -0.27 0.34 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 30 H 0.11 2.55 5.46 -51.93 -0.28 2.26 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 5.30 8.78 -39.29 -0.35 4.96 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -28.92 299.15 -7.33 -36.25 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.20 Total: 6.79 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.73 Total: -0.74 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.32 Total: -48.82 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.67 Total: 14.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.92 -7.33 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.956 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds