Wall clock time and date at job start Mon Mar 30 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46991 * 2 1 4 4 C 1.46496 * 120.00246 * 274.85913 * 3 2 1 5 5 C 1.50700 * 109.47353 * 270.00244 * 4 3 2 6 6 H 1.08005 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00061 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99610 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00197 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46721 * 90.00030 * 9 7 5 11 11 H 1.48497 * 109.47177 * 210.00162 * 9 7 5 12 12 H 1.48501 * 109.46968 * 330.00299 * 9 7 5 13 13 C 1.34778 * 119.99970 * 94.86022 * 3 2 1 14 14 O 1.21283 * 119.99783 * 5.47576 * 13 3 2 15 15 C 1.50700 * 120.00203 * 185.47910 * 13 3 2 16 16 H 1.08995 * 109.45052 * 33.76342 * 15 13 3 17 17 C 1.53040 * 109.45735 * 273.79099 * 15 13 3 18 18 C 1.53119 * 109.30758 * 180.82303 * 17 15 13 19 19 C 1.53119 * 109.16046 * 57.63594 * 18 17 15 20 20 C 1.53040 * 109.27959 * 302.34303 * 19 18 17 21 21 N 1.46846 * 109.49555 * 153.71875 * 15 13 3 22 22 H 1.08998 * 109.47068 * 55.01296 * 1 2 3 23 23 H 1.09007 * 109.46895 * 175.00922 * 1 2 3 24 24 H 1.08995 * 109.47424 * 295.00906 * 1 2 3 25 25 H 1.09003 * 109.47031 * 240.00531 * 2 1 3 26 26 H 1.08999 * 109.46943 * 120.00210 * 2 1 3 27 27 H 1.09005 * 109.47316 * 29.99774 * 4 3 2 28 28 H 1.09004 * 109.47168 * 149.99843 * 4 3 2 29 29 H 0.96997 * 119.99488 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.50684 * 60.86463 * 17 15 13 31 31 H 1.08994 * 109.50126 * 300.78400 * 17 15 13 32 32 H 1.08994 * 109.52359 * 177.53759 * 18 17 15 33 33 H 1.09002 * 109.52677 * 297.67117 * 18 17 15 34 34 H 1.08993 * 109.50633 * 62.28288 * 19 18 17 35 35 H 1.09004 * 109.50530 * 182.36790 * 19 18 17 36 36 H 1.08991 * 109.46592 * 179.19321 * 20 19 18 37 37 H 1.08997 * 109.46554 * 299.16905 * 20 19 18 38 38 H 1.00897 * 110.99803 * 305.83523 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.1077 -1.2641 5 6 3.5449 1.8849 -1.8180 6 1 4.2478 1.2645 -1.2817 7 6 3.9139 2.4739 -3.0088 8 7 5.1217 2.2798 -3.4918 9 14 2.6985 3.5474 -3.9359 10 1 2.8361 4.9551 -3.4835 11 1 2.9767 3.4660 -5.3923 12 1 1.3163 3.0745 -3.6688 13 6 2.3362 1.9836 1.1630 14 8 2.3133 1.3529 2.1987 15 6 2.7200 3.4409 1.1766 16 1 2.1576 3.9715 0.4083 17 6 4.2185 3.5760 0.8967 18 6 4.6085 5.0563 0.9316 19 6 4.2338 5.6427 2.2956 20 6 2.7347 5.4485 2.5345 21 7 2.4125 4.0164 2.4922 22 1 -0.3633 0.5892 -0.8419 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3634 0.4344 0.9313 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.4215 1.7444 -1.9776 28 1 2.0063 3.1726 -1.0907 29 1 5.3811 2.6939 -4.3297 30 1 4.4437 3.1635 -0.0867 31 1 4.7809 3.0335 1.6565 32 1 5.6829 5.1537 0.7761 33 1 4.0765 5.5919 0.1454 34 1 4.7960 5.1328 3.0778 35 1 4.4706 6.7066 2.3118 36 1 2.4673 5.8521 3.5110 37 1 2.1729 5.9701 1.7598 38 1 1.4481 3.8552 2.7409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:35 Heat of formation + Delta-G solvation = -62.869739 kcal Electronic energy + Delta-G solvation = -18492.199878 eV Core-core repulsion = 15754.252384 eV Total energy + Delta-G solvation = -2737.947495 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.24219 -38.76417 -36.99100 -34.69724 -33.06963 -32.83649 -31.25560 -29.48877 -25.82846 -24.61380 -24.26144 -23.35171 -20.80762 -19.91404 -18.99096 -18.18237 -17.72338 -16.78651 -16.32775 -15.64671 -15.41130 -15.09569 -14.76771 -14.70781 -14.36458 -14.25883 -14.09365 -13.65971 -13.45704 -13.21844 -13.18636 -12.61549 -12.51723 -12.27525 -12.08896 -11.87331 -11.82829 -11.70178 -11.64492 -11.23822 -10.75779 -10.49899 -9.45486 -9.36894 -8.28062 -6.33546 1.38934 1.41057 1.49731 1.67994 2.18847 2.34509 3.04624 3.24961 3.62018 3.94430 3.98195 4.08894 4.18281 4.32414 4.34398 4.39125 4.52434 4.65528 4.71031 4.74928 4.84729 4.86221 4.92279 5.00187 5.01491 5.11180 5.23261 5.28698 5.39751 5.45279 5.45960 5.69435 6.00457 6.19984 6.40716 6.60960 6.70849 7.24912 7.35555 8.87801 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.011404 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.052706 B = 2454.647573 C = 3552.735287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.215 3.785 5 C -0.531 4.531 6 H 0.031 0.969 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.240 1.240 13 C 0.514 3.486 14 O -0.579 6.579 15 C 0.089 3.911 16 H 0.062 0.938 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.114 4.114 20 C 0.060 3.940 21 N -0.681 5.681 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.038 0.962 38 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 6.753 6.156 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.093 3.907 5 C -0.569 4.569 6 H 0.049 0.951 7 C -0.175 4.175 8 N -0.578 5.578 9 Si 0.756 3.244 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.163 1.163 13 C 0.303 3.697 14 O -0.460 6.460 15 C -0.024 4.024 16 H 0.080 0.920 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.068 4.068 21 N -0.315 5.315 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.936 6.258 6.807 12.185 hybrid contribution -0.457 0.316 -1.339 1.450 sum -8.393 6.574 5.468 11.981 Atomic orbital electron populations 1.22017 0.93861 1.03325 1.01662 1.21444 0.95629 0.82494 1.02283 1.48051 1.63315 1.14481 1.06946 1.19691 0.96097 0.92918 0.81979 1.21369 0.97955 1.30983 1.06630 0.95116 1.25693 0.96718 0.97356 0.97718 1.70049 1.20819 1.45536 1.21357 0.85927 0.80682 0.79912 0.77888 1.18568 1.21197 1.16315 1.20812 0.75811 0.90221 0.82899 1.90571 1.54960 1.67064 1.33379 1.21259 0.98368 0.91025 0.91728 0.92032 1.21601 0.92594 0.98585 1.02348 1.21526 1.01405 0.93927 0.98337 1.21624 0.95768 1.01517 0.96228 1.22058 0.96467 0.86215 1.02099 1.59978 1.28407 1.15809 1.27265 0.92200 0.89421 0.93350 0.90815 0.91622 0.93564 0.93901 0.92307 0.90533 0.93694 0.91511 0.92021 0.92010 0.88991 0.88321 0.94409 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 10.24 71.98 0.74 -3.51 16 2 C 0.10 3.78 6.22 86.38 0.54 4.32 16 3 N -0.60 -24.61 2.46 -826.14 -2.03 -26.64 16 4 C 0.22 9.19 4.03 85.63 0.35 9.54 16 5 C -0.53 -27.74 7.63 25.60 0.20 -27.54 16 6 H 0.03 1.87 8.02 -2.91 -0.02 1.85 16 7 C 0.02 1.30 5.47 84.65 0.46 1.76 16 8 N -0.94 -54.63 13.96 21.45 0.30 -54.33 16 9 Si 0.93 38.98 27.47 68.60 1.88 40.86 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 13 C 0.51 21.75 6.77 87.66 0.59 22.35 16 14 O -0.58 -27.14 16.12 -3.04 -0.05 -27.19 16 15 C 0.09 3.28 2.11 44.19 0.09 3.38 16 16 H 0.06 2.20 6.15 -2.39 -0.01 2.19 16 17 C -0.11 -4.45 5.31 30.65 0.16 -4.29 16 18 C -0.11 -3.58 6.00 30.67 0.18 -3.40 16 19 C -0.11 -2.84 6.09 30.65 0.19 -2.66 16 20 C 0.06 1.46 6.55 86.33 0.57 2.02 16 21 N -0.68 -21.50 6.14 -495.56 -3.04 -24.54 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 26 H 0.07 2.51 7.22 -2.39 -0.02 2.49 16 27 H 0.05 1.88 7.13 -2.38 -0.02 1.86 16 28 H 0.04 1.74 5.22 -2.38 -0.01 1.73 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.08 3.59 5.46 -2.39 -0.01 3.58 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.35 10.12 8.78 -89.70 -0.79 9.33 16 Total: -1.00 -64.24 299.15 1.32 -62.92 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.19 Total: 26.96 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.06 Total: 1.96 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -4.77 Total: -105.51 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.88 Total: 40.86 kcal Total: -64.24 1.32 -62.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.052 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds