Wall clock time and date at job start Mon Mar 30 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47482 * 2 1 4 4 C 1.46505 * 119.99697 * 270.00370 * 3 2 1 5 5 C 1.50702 * 109.46640 * 269.99167 * 4 3 2 6 6 H 1.07997 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99600 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00232 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99669 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47233 * 60.00334 * 9 7 5 11 11 H 1.48507 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47514 * 300.00482 * 9 7 5 13 13 C 1.34771 * 120.00037 * 89.99402 * 3 2 1 14 14 O 1.21288 * 120.00033 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00326 * 0.02562 * 13 3 2 16 16 H 1.09004 * 109.46284 * 319.97392 * 15 13 3 17 17 C 1.53030 * 109.46526 * 79.94079 * 15 13 3 18 18 C 1.53203 * 109.30370 * 179.19749 * 17 15 13 19 19 C 1.53123 * 109.11533 * 302.37368 * 18 17 15 20 20 C 1.53039 * 109.31189 * 57.63615 * 19 18 17 21 21 N 1.46846 * 109.46446 * 199.99807 * 15 13 3 22 22 H 1.09000 * 109.47028 * 300.00253 * 1 2 3 23 23 H 1.09003 * 109.46923 * 60.00612 * 1 2 3 24 24 H 1.09000 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47501 * 239.99988 * 2 1 3 26 26 H 1.09006 * 109.47168 * 119.99849 * 2 1 3 27 27 H 1.08995 * 109.47320 * 29.99259 * 4 3 2 28 28 H 1.09004 * 109.46932 * 149.99772 * 4 3 2 29 29 H 0.96998 * 120.00007 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.50569 * 299.14418 * 17 15 13 31 31 H 1.09007 * 109.50504 * 59.21597 * 17 15 13 32 32 H 1.08994 * 109.57907 * 182.46159 * 18 17 15 33 33 H 1.08997 * 109.51203 * 62.24423 * 18 17 15 34 34 H 1.09002 * 109.50371 * 297.67165 * 19 18 17 35 35 H 1.09003 * 109.50070 * 177.59325 * 19 18 17 36 36 H 1.09000 * 109.46148 * 60.81334 * 20 19 18 37 37 H 1.09001 * 109.46317 * 180.79820 * 20 19 18 38 38 H 1.00903 * 110.99902 * 54.14522 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9139 2.0975 -3.4163 10 1 6.1419 0.6408 -3.5941 11 1 6.1618 2.7984 -4.7018 12 1 6.8410 2.6207 -2.3810 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 1 1.0815 0.7123 2.3934 17 6 3.1742 0.3868 2.7877 18 6 2.9246 -0.3183 4.1248 19 6 2.7207 0.7354 5.2169 20 6 1.5517 1.6446 4.8311 21 7 1.8396 2.2955 3.5466 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1385 29 1 3.6758 3.5177 -4.4431 30 1 3.2775 -0.3572 1.9979 31 1 4.0878 0.9778 2.8526 32 1 3.7834 -0.9410 4.3752 33 1 2.0328 -0.9402 4.0475 34 1 3.6270 1.3321 5.3207 35 1 2.5002 0.2409 6.1630 36 1 0.6430 1.0493 4.7410 37 1 1.4134 2.4045 5.6002 38 1 1.1273 2.9722 3.3165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:38 Heat of formation + Delta-G solvation = -44.073901 kcal Electronic energy + Delta-G solvation = -18162.589966 eV Core-core repulsion = 15425.457521 eV Total energy + Delta-G solvation = -2737.132446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70317 -37.41670 -35.23907 -32.81254 -31.99710 -30.96711 -30.04673 -27.13780 -24.40256 -23.40906 -22.90857 -22.05414 -19.72178 -18.47923 -16.66376 -16.37022 -16.26668 -15.20826 -14.52033 -14.41753 -13.95605 -13.90697 -13.43244 -13.40391 -13.08894 -12.79875 -12.69419 -12.03664 -11.86728 -11.68933 -11.28508 -11.08325 -10.95023 -10.88803 -10.78077 -10.60527 -10.49042 -10.29394 -10.08128 -9.60894 -8.72517 -8.39930 -8.24817 -7.60472 -6.00859 -4.05328 3.34072 3.38572 3.40517 3.47834 3.80900 4.39304 4.49201 4.83160 4.86669 4.97771 5.18636 5.26355 5.32537 5.35439 5.38855 5.52525 5.62567 5.65773 5.74249 5.79386 5.87480 5.95490 6.04566 6.11716 6.21828 6.23948 6.41872 6.51115 6.98001 7.20174 7.47292 7.49133 7.60718 7.96116 8.27691 8.48847 8.94634 9.17919 9.59720 11.07198 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.006659 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.662242 B = 4203.929939 C = 4469.567834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.073 3.927 16 H 0.053 0.947 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.119 4.119 20 C 0.061 3.939 21 N -0.668 5.668 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 -8.895 13.737 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.040 4.040 16 H 0.071 0.929 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.069 4.069 21 N -0.301 5.301 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.713 -8.111 13.649 16.562 hybrid contribution -0.012 -0.478 -0.596 0.764 sum -4.725 -8.588 13.053 16.324 Atomic orbital electron populations 1.22230 0.96999 1.01321 1.02153 1.21509 0.93402 0.84553 1.02782 1.48250 1.63992 1.13161 1.07656 1.19246 0.96211 0.93599 0.78136 1.21407 0.96949 1.31831 1.06197 0.92530 1.24931 0.97802 0.94943 0.96420 1.69921 1.35733 1.33448 1.14387 0.86572 0.84911 0.78203 0.77811 1.20280 1.21191 1.20173 1.20174 0.78994 0.86997 0.84684 1.90677 1.44504 1.17875 1.86886 1.21499 0.98672 0.93120 0.90712 0.92928 1.21592 0.98233 0.97783 0.97168 1.21589 1.01491 0.97511 0.94986 1.21610 0.99375 0.97028 0.97673 1.21920 0.96195 0.96997 0.91757 1.59926 1.52967 1.15939 1.01285 0.93363 0.91983 0.92218 0.89956 0.91483 0.95105 0.93985 0.92709 0.90827 0.90408 0.91588 0.92314 0.90975 0.91849 0.95604 0.90719 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.10 37.16 0.38 -1.93 16 2 C 0.10 1.66 5.72 -4.04 -0.02 1.64 16 3 N -0.60 -12.81 2.46 -175.05 -0.43 -13.24 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.53 16 5 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.51 10.85 6.84 -10.99 -0.08 10.78 16 14 O -0.52 -13.72 16.10 5.55 0.09 -13.63 16 15 C 0.07 1.17 1.99 -68.88 -0.14 1.03 16 16 H 0.05 0.75 6.12 -51.93 -0.32 0.43 16 17 C -0.11 -1.59 5.10 -26.61 -0.14 -1.73 16 18 C -0.12 -1.31 6.01 -26.56 -0.16 -1.46 16 19 C -0.12 -1.27 6.09 -26.65 -0.16 -1.44 16 20 C 0.06 0.69 6.55 -3.83 -0.03 0.67 16 21 N -0.67 -10.15 6.09 -107.98 -0.66 -10.81 16 22 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 26 H 0.07 0.94 4.75 -51.93 -0.25 0.69 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 31 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.35 5.24 8.74 -39.29 -0.34 4.90 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -33.03 303.25 -7.68 -40.72 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.18 Total: 1.13 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.79 Total: 0.34 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.35 Total: -50.25 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.03 -7.68 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.358 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds