Wall clock time and date at job start Mon Mar 30 2020 03:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47482 * 2 1 4 4 C 1.46505 * 119.99697 * 270.00370 * 3 2 1 5 5 C 1.50702 * 109.46640 * 269.99167 * 4 3 2 6 6 H 1.07997 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99600 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00232 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99669 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47233 * 60.00334 * 9 7 5 11 11 H 1.48507 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47514 * 300.00482 * 9 7 5 13 13 C 1.34771 * 120.00037 * 89.99402 * 3 2 1 14 14 O 1.21288 * 120.00033 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00326 * 0.02562 * 13 3 2 16 16 H 1.09004 * 109.46284 * 319.97392 * 15 13 3 17 17 C 1.53030 * 109.46526 * 79.94079 * 15 13 3 18 18 C 1.53203 * 109.30370 * 179.19749 * 17 15 13 19 19 C 1.53123 * 109.11533 * 302.37368 * 18 17 15 20 20 C 1.53039 * 109.31189 * 57.63615 * 19 18 17 21 21 N 1.46846 * 109.46446 * 199.99807 * 15 13 3 22 22 H 1.09000 * 109.47028 * 300.00253 * 1 2 3 23 23 H 1.09003 * 109.46923 * 60.00612 * 1 2 3 24 24 H 1.09000 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47501 * 239.99988 * 2 1 3 26 26 H 1.09006 * 109.47168 * 119.99849 * 2 1 3 27 27 H 1.08995 * 109.47320 * 29.99259 * 4 3 2 28 28 H 1.09004 * 109.46932 * 149.99772 * 4 3 2 29 29 H 0.96998 * 120.00007 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.50569 * 299.14418 * 17 15 13 31 31 H 1.09007 * 109.50504 * 59.21597 * 17 15 13 32 32 H 1.08994 * 109.57907 * 182.46159 * 18 17 15 33 33 H 1.08997 * 109.51203 * 62.24423 * 18 17 15 34 34 H 1.09002 * 109.50371 * 297.67165 * 19 18 17 35 35 H 1.09003 * 109.50070 * 177.59325 * 19 18 17 36 36 H 1.09000 * 109.46148 * 60.81334 * 20 19 18 37 37 H 1.09001 * 109.46317 * 180.79820 * 20 19 18 38 38 H 1.00903 * 110.99902 * 54.14522 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9139 2.0975 -3.4163 10 1 6.1419 0.6408 -3.5941 11 1 6.1618 2.7984 -4.7018 12 1 6.8410 2.6207 -2.3810 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 1 1.0815 0.7123 2.3934 17 6 3.1742 0.3868 2.7877 18 6 2.9246 -0.3183 4.1248 19 6 2.7207 0.7354 5.2169 20 6 1.5517 1.6446 4.8311 21 7 1.8396 2.2955 3.5466 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1385 29 1 3.6758 3.5177 -4.4431 30 1 3.2775 -0.3572 1.9979 31 1 4.0878 0.9778 2.8526 32 1 3.7834 -0.9410 4.3752 33 1 2.0328 -0.9402 4.0475 34 1 3.6270 1.3321 5.3207 35 1 2.5002 0.2409 6.1630 36 1 0.6430 1.0493 4.7410 37 1 1.4134 2.4045 5.6002 38 1 1.1273 2.9722 3.3165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:37 Heat of formation + Delta-G solvation = -67.742546 kcal Electronic energy + Delta-G solvation = -18163.616316 eV Core-core repulsion = 15425.457521 eV Total energy + Delta-G solvation = -2738.158795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19822 -38.69899 -36.96746 -34.93266 -33.03163 -32.24402 -31.51653 -29.06458 -25.95499 -24.64450 -24.33619 -23.49182 -20.75847 -20.02647 -18.62876 -18.03186 -17.73440 -16.83515 -16.12112 -15.95023 -15.33446 -15.08053 -14.77411 -14.51978 -14.36032 -14.14264 -13.99790 -13.78586 -13.37061 -13.17254 -13.07541 -12.70332 -12.57604 -12.30890 -12.14266 -11.98850 -11.78998 -11.70635 -11.65601 -11.26844 -10.65016 -10.39898 -9.46468 -9.33680 -8.22933 -6.37880 1.35020 1.39973 1.47042 1.80819 2.23787 2.41179 3.06215 3.23323 3.59381 3.85677 3.98791 4.09318 4.12909 4.26727 4.28886 4.39711 4.51984 4.63995 4.79081 4.82999 4.90298 4.94674 4.95758 5.02529 5.10177 5.19238 5.19937 5.27281 5.35417 5.47712 5.56919 5.83955 6.03750 6.06497 6.35816 6.69893 6.81282 7.27917 7.50479 8.84010 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.006659 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.662242 B = 4203.929939 C = 4469.567834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 N -0.602 5.602 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.496 3.504 14 O -0.586 6.586 15 C 0.089 3.911 16 H 0.081 0.919 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.119 4.119 20 C 0.059 3.941 21 N -0.692 5.692 22 H 0.056 0.944 23 H 0.040 0.960 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.023 0.977 28 H -0.006 1.006 29 H 0.267 0.733 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -11.586 15.381 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.333 5.333 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.465 6.465 15 C -0.024 4.024 16 H 0.099 0.901 17 C -0.148 4.148 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.069 4.069 21 N -0.325 5.325 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.041 0.959 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.891 -10.862 15.316 19.404 hybrid contribution -0.002 0.388 -1.093 1.160 sum -4.893 -10.474 14.224 18.329 Atomic orbital electron populations 1.22162 0.94539 1.03619 1.01535 1.21850 0.95393 0.81566 1.03950 1.48278 1.63898 1.15043 1.06113 1.18690 0.95341 0.91399 0.80443 1.21679 0.97882 1.32082 1.06545 0.92959 1.25867 1.02439 0.94434 0.96411 1.70044 1.37851 1.34117 1.14818 0.85482 0.78942 0.79136 0.77342 1.18254 1.20182 1.20526 1.21292 0.77422 0.86516 0.86377 1.90633 1.47243 1.20726 1.87918 1.21388 1.00379 0.92934 0.87665 0.90127 1.21631 0.96070 0.97312 0.99835 1.21587 1.03242 0.97515 0.92461 1.21653 0.98267 0.96767 0.99019 1.22078 0.97320 0.97660 0.89847 1.59931 1.53635 1.16466 1.02505 0.92537 0.94105 0.88355 0.90768 0.88317 0.95923 0.98819 0.92385 0.90424 0.93622 0.90093 0.89973 0.92823 0.88740 0.93581 0.89537 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.10 71.98 0.73 -3.31 16 2 C 0.09 2.96 5.72 86.38 0.49 3.46 16 3 N -0.60 -26.40 2.46 -826.14 -2.03 -28.43 16 4 C 0.26 14.65 5.16 85.63 0.44 15.10 16 5 C -0.54 -32.24 9.39 25.60 0.24 -32.00 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 C 0.50 21.82 6.84 87.66 0.60 22.42 16 14 O -0.59 -32.42 16.10 -3.05 -0.05 -32.47 16 15 C 0.09 2.75 1.99 44.19 0.09 2.83 16 16 H 0.08 2.03 6.12 -2.38 -0.01 2.02 16 17 C -0.11 -3.02 5.10 30.67 0.16 -2.86 16 18 C -0.11 -2.02 6.01 30.70 0.18 -1.84 16 19 C -0.12 -2.16 6.09 30.65 0.19 -1.97 16 20 C 0.06 1.18 6.55 86.32 0.57 1.74 16 21 N -0.69 -20.43 6.09 -495.55 -3.02 -23.45 16 22 H 0.06 1.33 7.16 -2.39 -0.02 1.31 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 26 H 0.10 2.47 4.75 -2.38 -0.01 2.45 16 27 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 28 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.08 2.02 6.32 -2.39 -0.02 2.00 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.34 10.36 8.74 -89.69 -0.78 9.57 16 Total: -1.00 -76.16 303.25 1.61 -74.55 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.25 Total: 14.51 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.15 Total: 4.48 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.76 Total: -108.97 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.16 1.61 -74.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.808 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds