Wall clock time and date at job start Mon Mar 30 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47017 * 2 1 4 4 C 1.46498 * 120.00166 * 92.83279 * 3 2 1 5 5 C 1.50706 * 109.47064 * 95.85273 * 4 3 2 6 6 H 1.08001 * 119.99994 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99837 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47263 * 239.99608 * 9 7 5 12 12 H 1.48497 * 109.46999 * 119.99404 * 9 7 5 13 13 C 1.34776 * 119.99757 * 272.82895 * 3 2 1 14 14 O 1.21282 * 120.00216 * 5.12416 * 13 3 2 15 15 C 1.50701 * 120.00163 * 185.11993 * 13 3 2 16 16 H 1.08994 * 109.50102 * 41.38135 * 15 13 3 17 17 C 1.53119 * 109.50107 * 161.45573 * 15 13 3 18 18 C 1.53124 * 109.15464 * 177.55526 * 17 15 13 19 19 C 1.53033 * 109.31150 * 302.40809 * 18 17 15 20 20 N 1.46845 * 109.52270 * 59.16180 * 19 18 17 21 21 C 1.46845 * 111.19515 * 298.25405 * 20 19 18 22 22 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47390 * 300.00780 * 1 2 3 24 24 H 1.09003 * 109.46524 * 60.00381 * 1 2 3 25 25 H 1.08995 * 109.47390 * 239.99220 * 2 1 3 26 26 H 1.09003 * 109.46524 * 119.99619 * 2 1 3 27 27 H 1.08989 * 109.47341 * 335.85094 * 4 3 2 28 28 H 1.08998 * 109.47127 * 215.84364 * 4 3 2 29 29 H 0.97000 * 119.99609 * 0.02562 * 8 7 5 30 30 H 1.08991 * 109.53041 * 297.50394 * 17 15 13 31 31 H 1.09007 * 109.51923 * 57.69786 * 17 15 13 32 32 H 1.09003 * 109.50283 * 182.44353 * 18 17 15 33 33 H 1.09000 * 109.50462 * 62.37297 * 18 17 15 34 34 H 1.09000 * 109.46595 * 299.13988 * 19 18 17 35 35 H 1.09002 * 109.45220 * 179.16807 * 19 18 17 36 36 H 1.00897 * 111.00121 * 62.35402 * 20 19 18 37 37 H 1.09003 * 109.46521 * 301.72573 * 21 20 19 38 38 H 1.09004 * 109.45306 * 181.75887 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3216 2.0510 1.2671 5 6 3.7951 1.9296 1.5594 6 1 4.4409 1.4055 0.8704 7 6 4.3184 2.4866 2.7069 8 7 3.5319 3.1243 3.5462 9 14 6.1447 2.3354 3.0696 10 1 6.8051 1.5764 1.9774 11 1 6.3363 1.6187 4.3559 12 1 6.7444 3.6907 3.1639 13 6 2.1886 2.0357 -1.1658 14 8 1.8506 1.5159 -2.2081 15 6 2.7990 3.4136 -1.1743 16 1 3.6323 3.4467 -0.4725 17 6 3.3034 3.7406 -2.5825 18 6 3.8663 5.1645 -2.5966 19 6 2.7798 6.1427 -2.1442 20 7 2.3321 5.7875 -0.7915 21 6 1.7435 4.4425 -0.7631 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7522 1.5837 2.0704 28 1 2.0512 3.1044 1.1951 29 1 2.5836 3.2024 3.3581 30 1 4.0866 3.0359 -2.8618 31 1 2.4780 3.6688 -3.2909 32 1 4.1874 5.4189 -3.6067 33 1 4.7170 5.2263 -1.9180 34 1 1.9354 6.0910 -2.8315 35 1 3.1825 7.1556 -2.1392 36 1 3.0884 5.8654 -0.1282 37 1 0.9039 4.3987 -1.4569 38 1 1.3933 4.2207 0.2450 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:54 Heat of formation + Delta-G solvation = -56.431672 kcal Electronic energy + Delta-G solvation = -18487.648466 eV Core-core repulsion = 15749.980147 eV Total energy + Delta-G solvation = -2737.668319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82300 -37.59691 -35.36488 -33.09349 -31.60267 -31.25209 -29.72257 -26.58665 -24.15468 -23.42193 -22.92827 -22.09567 -20.15531 -18.41794 -17.16628 -16.10483 -15.75613 -15.53604 -14.80844 -14.43939 -14.00078 -13.87573 -13.56498 -13.01160 -12.88542 -12.62182 -12.40033 -11.93614 -11.89460 -11.57842 -11.52495 -11.18611 -11.04084 -10.91611 -10.76826 -10.55043 -10.30385 -10.23894 -10.19037 -9.28387 -9.10670 -8.54491 -8.10930 -7.69181 -6.55172 -4.31543 3.31826 3.35239 3.35827 3.50025 3.85349 4.37668 4.55827 5.01164 5.06972 5.16451 5.24031 5.40068 5.45312 5.63196 5.64587 5.73555 5.76355 5.80888 5.90685 6.04721 6.10569 6.16290 6.20933 6.28215 6.34643 6.44056 6.54452 6.56241 6.70394 6.88626 7.21198 7.41227 7.60625 7.82591 8.10656 8.38482 8.62024 8.95081 9.39280 10.80471 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.010881 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.501203 B = 2572.721634 C = 3646.521683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.592 5.592 4 C 0.222 3.778 5 C -0.617 4.617 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.903 5.903 9 Si 1.071 2.929 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.526 3.474 14 O -0.575 6.575 15 C -0.144 4.144 16 H 0.115 0.885 17 C -0.097 4.097 18 C -0.157 4.157 19 C 0.056 3.944 20 N -0.681 5.681 21 C 0.071 3.929 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.034 0.966 29 H 0.270 0.730 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.347 0.653 37 H 0.068 0.932 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 2.042 -7.196 7.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.322 5.322 4 C 0.101 3.899 5 C -0.656 4.656 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.538 5.538 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.314 3.686 14 O -0.456 6.456 15 C -0.167 4.167 16 H 0.133 0.867 17 C -0.135 4.135 18 C -0.196 4.196 19 C -0.074 4.074 20 N -0.310 5.310 21 C -0.059 4.059 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.188 2.501 -6.655 7.208 hybrid contribution -0.250 -1.159 -1.015 1.561 sum -1.438 1.342 -7.670 7.918 Atomic orbital electron populations 1.22109 0.96829 1.01266 1.01941 1.21237 0.93491 0.83814 1.02212 1.48072 1.63240 1.13206 1.07696 1.19650 0.97032 0.92918 0.80270 1.22359 0.93121 1.40213 1.09906 0.92731 1.25779 1.06654 0.93173 0.92427 1.70772 1.06706 1.39049 1.37272 0.83497 0.74066 0.76638 0.75870 1.21522 1.21170 1.21104 1.20360 0.77757 0.87509 0.83010 1.90568 1.52926 1.69794 1.32325 1.22066 1.01578 0.93350 0.99702 0.86743 1.21346 1.00755 0.95673 0.95751 1.22285 0.99385 0.96162 1.01817 1.22028 0.96823 0.97831 0.90717 1.60711 1.37180 1.26048 1.07022 1.22012 0.95632 0.85864 1.02436 0.92406 0.92799 0.92591 0.91372 0.90672 0.95669 0.94795 0.91996 0.92056 0.91416 0.91630 0.91758 0.91225 0.90972 0.83507 0.91387 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.22 37.16 0.38 -2.26 16 2 C 0.12 2.18 6.03 -4.04 -0.02 2.16 16 3 N -0.59 -12.56 2.48 -175.06 -0.43 -12.99 16 4 C 0.22 5.10 4.15 -5.19 -0.02 5.08 16 5 C -0.62 -15.78 8.12 -34.44 -0.28 -16.06 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.03 0.66 5.46 -17.82 -0.10 0.56 16 8 N -0.90 -24.90 13.65 55.43 0.76 -24.14 16 9 Si 1.07 23.70 29.90 -169.99 -5.08 18.62 16 10 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.53 11.16 6.79 -10.99 -0.07 11.08 16 14 O -0.58 -13.18 15.66 5.56 0.09 -13.09 16 15 C -0.14 -2.70 1.87 -91.70 -0.17 -2.87 16 16 H 0.11 2.39 6.53 -51.93 -0.34 2.05 16 17 C -0.10 -1.61 4.78 -26.61 -0.13 -1.74 16 18 C -0.16 -2.14 6.08 -26.65 -0.16 -2.30 16 19 C 0.06 0.74 6.55 -3.84 -0.03 0.71 16 20 N -0.68 -10.53 6.87 -113.82 -0.78 -11.31 16 21 C 0.07 1.22 5.60 -3.84 -0.02 1.20 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.30 7.59 -51.93 -0.39 0.90 16 26 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 27 H 0.03 0.61 7.89 -51.94 -0.41 0.20 16 28 H 0.03 0.79 4.57 -51.93 -0.24 0.55 16 29 H 0.27 7.34 7.22 -40.82 -0.29 7.04 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.16 7.83 -51.92 -0.41 0.75 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.35 5.45 8.86 -39.29 -0.35 5.10 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.60 5.65 -51.93 -0.29 1.31 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -28.23 300.82 -7.70 -35.93 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.15 Total: 6.89 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.62 Total: -4.43 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.46 Total: -48.45 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.08 Total: 18.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.23 -7.70 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.502 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds