Wall clock time and date at job start Mon Mar 30 2020 03:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47017 * 2 1 4 4 C 1.46498 * 120.00166 * 92.83279 * 3 2 1 5 5 C 1.50706 * 109.47064 * 95.85273 * 4 3 2 6 6 H 1.08001 * 119.99994 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99837 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47263 * 239.99608 * 9 7 5 12 12 H 1.48497 * 109.46999 * 119.99404 * 9 7 5 13 13 C 1.34776 * 119.99757 * 272.82895 * 3 2 1 14 14 O 1.21282 * 120.00216 * 5.12416 * 13 3 2 15 15 C 1.50701 * 120.00163 * 185.11993 * 13 3 2 16 16 H 1.08994 * 109.50102 * 41.38135 * 15 13 3 17 17 C 1.53119 * 109.50107 * 161.45573 * 15 13 3 18 18 C 1.53124 * 109.15464 * 177.55526 * 17 15 13 19 19 C 1.53033 * 109.31150 * 302.40809 * 18 17 15 20 20 N 1.46845 * 109.52270 * 59.16180 * 19 18 17 21 21 C 1.46845 * 111.19515 * 298.25405 * 20 19 18 22 22 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47390 * 300.00780 * 1 2 3 24 24 H 1.09003 * 109.46524 * 60.00381 * 1 2 3 25 25 H 1.08995 * 109.47390 * 239.99220 * 2 1 3 26 26 H 1.09003 * 109.46524 * 119.99619 * 2 1 3 27 27 H 1.08989 * 109.47341 * 335.85094 * 4 3 2 28 28 H 1.08998 * 109.47127 * 215.84364 * 4 3 2 29 29 H 0.97000 * 119.99609 * 0.02562 * 8 7 5 30 30 H 1.08991 * 109.53041 * 297.50394 * 17 15 13 31 31 H 1.09007 * 109.51923 * 57.69786 * 17 15 13 32 32 H 1.09003 * 109.50283 * 182.44353 * 18 17 15 33 33 H 1.09000 * 109.50462 * 62.37297 * 18 17 15 34 34 H 1.09000 * 109.46595 * 299.13988 * 19 18 17 35 35 H 1.09002 * 109.45220 * 179.16807 * 19 18 17 36 36 H 1.00897 * 111.00121 * 62.35402 * 20 19 18 37 37 H 1.09003 * 109.46521 * 301.72573 * 21 20 19 38 38 H 1.09004 * 109.45306 * 181.75887 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3216 2.0510 1.2671 5 6 3.7951 1.9296 1.5594 6 1 4.4409 1.4055 0.8704 7 6 4.3184 2.4866 2.7069 8 7 3.5319 3.1243 3.5462 9 14 6.1447 2.3354 3.0696 10 1 6.8051 1.5764 1.9774 11 1 6.3363 1.6187 4.3559 12 1 6.7444 3.6907 3.1639 13 6 2.1886 2.0357 -1.1658 14 8 1.8506 1.5159 -2.2081 15 6 2.7990 3.4136 -1.1743 16 1 3.6323 3.4467 -0.4725 17 6 3.3034 3.7406 -2.5825 18 6 3.8663 5.1645 -2.5966 19 6 2.7798 6.1427 -2.1442 20 7 2.3321 5.7875 -0.7915 21 6 1.7435 4.4425 -0.7631 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7522 1.5837 2.0704 28 1 2.0512 3.1044 1.1951 29 1 2.5836 3.2024 3.3581 30 1 4.0866 3.0359 -2.8618 31 1 2.4780 3.6688 -3.2909 32 1 4.1874 5.4189 -3.6067 33 1 4.7170 5.2263 -1.9180 34 1 1.9354 6.0910 -2.8315 35 1 3.1825 7.1556 -2.1392 36 1 3.0884 5.8654 -0.1282 37 1 0.9039 4.3987 -1.4569 38 1 1.3933 4.2207 0.2450 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:53 Heat of formation + Delta-G solvation = -74.486831 kcal Electronic energy + Delta-G solvation = -18488.431397 eV Core-core repulsion = 15749.980147 eV Total energy + Delta-G solvation = -2738.451249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41855 -38.99030 -37.14147 -34.98685 -33.07515 -32.55559 -31.17353 -28.48604 -25.57855 -25.14875 -24.44305 -23.48856 -21.47489 -20.12277 -19.03693 -17.78877 -17.36885 -16.92414 -16.35423 -15.68704 -15.67917 -15.46640 -15.04921 -14.72181 -14.38340 -14.08429 -13.90268 -13.50663 -13.29011 -13.19522 -13.06986 -12.78527 -12.55010 -12.39841 -12.23551 -11.98698 -11.92049 -11.70232 -11.60592 -11.19073 -10.77669 -10.52806 -9.56106 -9.33383 -8.62824 -6.41312 1.54309 1.60258 1.64106 1.77412 2.22434 2.53631 3.12969 3.27765 3.60647 3.72554 3.95283 4.01476 4.10657 4.28113 4.28358 4.33766 4.41806 4.50389 4.56016 4.64351 4.70973 4.81903 4.87963 4.93500 4.98978 5.00588 5.06870 5.13268 5.20285 5.33373 5.66743 5.82697 5.97429 6.10319 6.35708 6.48262 6.60855 7.22292 7.37026 8.71847 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.010881 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.501203 B = 2572.721634 C = 3646.521683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.234 3.766 5 C -0.619 4.619 6 H 0.039 0.961 7 C -0.013 4.013 8 N -0.923 5.923 9 Si 1.112 2.888 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.518 3.482 14 O -0.594 6.594 15 C -0.138 4.138 16 H 0.092 0.908 17 C -0.094 4.094 18 C -0.149 4.149 19 C 0.056 3.944 20 N -0.682 5.682 21 C 0.081 3.919 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.345 0.655 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 2.699 -7.814 8.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.327 5.327 4 C 0.113 3.887 5 C -0.657 4.657 6 H 0.057 0.943 7 C -0.214 4.214 8 N -0.560 5.560 9 Si 0.935 3.065 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.307 3.693 14 O -0.476 6.476 15 C -0.161 4.161 16 H 0.110 0.890 17 C -0.132 4.132 18 C -0.188 4.188 19 C -0.073 4.073 20 N -0.310 5.310 21 C -0.049 4.049 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.731 3.154 -7.283 7.970 hybrid contribution -0.430 -1.406 -0.861 1.704 sum -1.161 1.748 -8.144 8.410 Atomic orbital electron populations 1.22001 0.94538 1.03130 1.01258 1.21432 0.95418 0.82608 1.02047 1.48149 1.63282 1.14097 1.07141 1.19388 0.95595 0.93051 0.80706 1.22475 0.94108 1.39611 1.09502 0.94265 1.26922 1.09676 0.92494 0.92325 1.70871 1.06539 1.40511 1.38030 0.82959 0.70302 0.77206 0.76060 1.20724 1.20632 1.20049 1.20836 0.77463 0.88353 0.82615 1.90546 1.53889 1.70456 1.32736 1.22040 1.00996 0.92410 1.00660 0.89005 1.21339 1.00290 0.97632 0.93948 1.22242 0.99183 0.93942 1.03409 1.22157 0.96982 0.98927 0.89275 1.60729 1.37398 1.24339 1.08499 1.21833 0.95327 0.86522 1.01242 0.89302 0.92854 0.93743 0.91748 0.90552 0.96723 0.94661 0.92848 0.93131 0.91811 0.89015 0.91977 0.90687 0.88390 0.83699 0.91142 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.22 71.98 0.74 -4.01 16 2 C 0.11 4.04 6.03 86.38 0.52 4.56 16 3 N -0.60 -25.60 2.48 -826.16 -2.05 -27.65 16 4 C 0.23 10.93 4.15 85.64 0.36 11.29 16 5 C -0.62 -31.87 8.12 25.60 0.21 -31.67 16 6 H 0.04 2.11 7.81 -2.91 -0.02 2.09 16 7 C -0.01 -0.69 5.46 84.65 0.46 -0.23 16 8 N -0.92 -51.00 13.65 21.45 0.29 -50.71 16 9 Si 1.11 47.12 29.90 68.60 2.05 49.17 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 13 C 0.52 22.19 6.79 87.66 0.60 22.79 16 14 O -0.59 -27.29 15.66 -3.04 -0.05 -27.34 16 15 C -0.14 -5.18 1.87 -11.49 -0.02 -5.20 16 16 H 0.09 3.88 6.53 -2.39 -0.02 3.87 16 17 C -0.09 -3.04 4.78 30.68 0.15 -2.89 16 18 C -0.15 -3.70 6.08 30.65 0.19 -3.51 16 19 C 0.06 1.33 6.55 86.32 0.57 1.89 16 20 N -0.68 -20.16 6.87 -514.03 -3.53 -23.68 16 21 C 0.08 2.78 5.60 86.32 0.48 3.27 16 22 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 2.45 7.59 -2.39 -0.02 2.43 16 26 H 0.08 2.81 8.05 -2.39 -0.02 2.79 16 27 H 0.01 0.72 7.89 -2.39 -0.02 0.70 16 28 H 0.04 1.67 4.57 -2.39 -0.01 1.66 16 29 H 0.26 14.44 7.22 -92.71 -0.67 13.77 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.11 7.83 -2.38 -0.02 2.09 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.35 10.49 8.86 -89.70 -0.79 9.69 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.56 5.65 -2.39 -0.01 2.55 16 Total: -1.00 -59.41 300.82 1.30 -58.10 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.34 Total: 25.82 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.24 Total: -3.71 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -5.28 Total: -102.04 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.05 Total: 49.17 kcal Total: -59.41 1.30 -58.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.383 kcal (2) G-P(sol) polarization free energy of solvation -59.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds