Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46755 * 2 1 4 4 C 1.46495 * 120.00183 * 270.00628 * 3 2 1 5 5 C 1.50709 * 109.46859 * 270.00071 * 4 3 2 6 6 H 1.07999 * 119.99849 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99789 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47273 * 89.99801 * 9 7 5 11 11 H 1.48497 * 109.47261 * 210.00156 * 9 7 5 12 12 H 1.48504 * 109.47070 * 329.99950 * 9 7 5 13 13 C 1.34782 * 119.99582 * 90.00292 * 3 2 1 14 14 O 1.21279 * 119.99389 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99855 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46800 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00029 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47254 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.50165 * 243.62147 * 18 17 16 20 20 C 1.52994 * 59.99907 * 252.50793 * 19 18 17 21 21 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47124 * 299.98963 * 1 2 3 23 23 H 1.08994 * 109.47738 * 60.00066 * 1 2 3 24 24 H 1.09000 * 109.46635 * 240.00894 * 2 1 3 25 25 H 1.08993 * 109.47227 * 120.00037 * 2 1 3 26 26 H 1.09004 * 109.47399 * 29.99565 * 4 3 2 27 27 H 1.09000 * 109.47338 * 150.00107 * 4 3 2 28 28 H 0.97001 * 120.00240 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47455 * 60.00021 * 15 13 3 30 30 H 1.09003 * 109.47449 * 299.99253 * 15 13 3 31 31 H 1.00908 * 110.99583 * 303.94914 * 16 15 13 32 32 H 1.09002 * 109.47043 * 299.99792 * 17 16 15 33 33 H 1.09001 * 109.47354 * 59.99854 * 17 16 15 34 34 H 1.09003 * 115.54795 * 29.32512 * 18 17 16 35 35 H 1.09001 * 117.49810 * 359.97438 * 19 18 17 36 36 H 1.08995 * 117.50134 * 145.01745 * 19 18 17 37 37 H 1.09004 * 117.49933 * 252.50827 * 20 19 18 38 38 H 1.09002 * 117.49788 * 107.49222 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1269 -3.6175 9 14 5.9135 2.0979 -3.4165 10 1 5.9774 0.8773 -4.2598 11 1 6.3924 3.2657 -4.1989 12 1 6.7735 1.9180 -2.2192 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9924 1.3058 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0776 1.5454 4.8802 18 6 2.4190 2.5116 6.0162 19 6 3.5746 2.1312 6.9440 20 6 2.1318 2.0504 7.4464 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.5815 1.6878 -2.0284 27 1 2.0953 3.1412 -1.1383 28 1 3.6751 3.5174 -4.4434 29 1 2.6229 0.4187 2.5298 30 1 0.9445 1.0113 2.5303 31 1 3.2580 2.5449 3.5218 32 1 1.0306 1.2517 4.9549 33 1 2.7094 0.6602 4.9543 34 1 2.2812 3.5692 5.7912 35 1 4.0914 1.1922 6.7454 36 1 4.1973 2.9384 7.3295 37 1 1.8052 2.8045 8.1625 38 1 1.6995 1.0584 7.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = -13.780805 kcal Electronic energy + Delta-G solvation = -17183.199666 eV Core-core repulsion = 14447.380828 eV Total energy + Delta-G solvation = -2735.818839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12175 -37.82081 -35.35056 -34.56733 -32.75174 -30.07207 -28.66685 -26.69002 -24.22581 -22.98171 -22.54328 -22.04359 -20.69455 -18.31968 -16.72115 -16.43695 -15.93767 -15.63410 -15.20185 -14.63310 -14.23764 -13.82074 -13.58669 -13.33201 -13.11916 -12.68444 -12.33876 -11.96275 -11.88642 -11.68578 -11.46675 -11.34259 -11.14071 -10.88954 -10.72191 -10.53488 -10.45807 -10.12551 -10.10013 -9.60753 -8.87392 -8.41551 -8.27881 -7.61303 -6.02078 -4.06852 3.30818 3.37481 3.40948 3.50045 3.59080 3.81883 4.32420 4.47495 4.69040 4.78029 4.97802 5.12510 5.27902 5.29968 5.32478 5.40906 5.45955 5.54429 5.55547 5.68003 5.69205 5.74319 5.84513 5.93834 6.04878 6.15108 6.25462 6.50777 6.93445 7.17382 7.46503 7.50467 7.59938 7.94850 8.26511 8.48098 8.93272 9.16463 9.58304 11.05936 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.005046 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.935210 B = 5548.150934 C = 6187.098743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.672 5.672 17 C 0.091 3.909 18 C -0.149 4.149 19 C -0.185 4.185 20 C -0.178 4.178 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.353 0.647 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -7.541 16.017 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.091 4.091 16 N -0.304 5.304 17 C -0.038 4.038 18 C -0.167 4.167 19 C -0.222 4.222 20 C -0.216 4.216 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.586 -6.505 15.801 17.693 hybrid contribution 1.680 -0.880 -0.385 1.936 sum -2.905 -7.385 15.416 17.339 Atomic orbital electron populations 1.22226 0.96817 1.01324 1.02406 1.21401 0.93519 0.84329 1.02514 1.48252 1.64099 1.13179 1.07707 1.19250 0.96142 0.93694 0.78135 1.21442 0.96981 1.31816 1.06231 0.92577 1.24933 0.97816 0.94931 0.96433 1.69932 1.35682 1.33437 1.14314 0.86505 0.84742 0.77652 0.78555 1.20680 1.21076 1.19958 1.20180 0.78879 0.87079 0.84884 1.90672 1.45106 1.17759 1.86940 1.21898 1.02244 0.94349 0.90639 1.60113 1.32834 1.37503 0.99991 1.21516 1.00788 0.93755 0.87781 1.22332 1.02871 1.01105 0.90397 1.23064 0.91380 1.03118 1.04619 1.22919 0.99005 1.02693 0.96953 0.92255 0.93019 0.92005 0.90002 0.91957 0.95075 0.93882 0.92737 0.93058 0.88825 0.82764 0.90743 0.95352 0.86710 0.88993 0.88839 0.88795 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.78 2.46 -175.06 -0.43 -13.21 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.68 7.71 -10.99 -0.08 10.60 16 14 O -0.53 -13.65 15.78 5.56 0.09 -13.57 16 15 C 0.04 0.63 4.72 -4.98 -0.02 0.61 16 16 N -0.67 -10.09 6.13 -115.06 -0.71 -10.79 16 17 C 0.09 1.04 5.97 -3.83 -0.02 1.02 16 18 C -0.15 -1.57 5.95 -90.62 -0.54 -2.11 16 19 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 20 C -0.18 -1.53 10.25 -26.74 -0.27 -1.81 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 25 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.05 0.71 7.40 -51.93 -0.38 0.32 16 30 H 0.09 1.27 7.19 -51.93 -0.37 0.89 16 31 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -32.74 318.72 -8.19 -40.92 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.35 Total: 2.05 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.31 Total: -1.08 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.40 Total: -50.11 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.74 -8.19 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.142 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds