Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46755 * 2 1 4 4 C 1.46495 * 120.00183 * 270.00628 * 3 2 1 5 5 C 1.50709 * 109.46859 * 270.00071 * 4 3 2 6 6 H 1.07999 * 119.99849 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99789 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47273 * 89.99801 * 9 7 5 11 11 H 1.48497 * 109.47261 * 210.00156 * 9 7 5 12 12 H 1.48504 * 109.47070 * 329.99950 * 9 7 5 13 13 C 1.34782 * 119.99582 * 90.00292 * 3 2 1 14 14 O 1.21279 * 119.99389 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99855 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46800 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00029 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47254 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.50165 * 243.62147 * 18 17 16 20 20 C 1.52994 * 59.99907 * 252.50793 * 19 18 17 21 21 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47124 * 299.98963 * 1 2 3 23 23 H 1.08994 * 109.47738 * 60.00066 * 1 2 3 24 24 H 1.09000 * 109.46635 * 240.00894 * 2 1 3 25 25 H 1.08993 * 109.47227 * 120.00037 * 2 1 3 26 26 H 1.09004 * 109.47399 * 29.99565 * 4 3 2 27 27 H 1.09000 * 109.47338 * 150.00107 * 4 3 2 28 28 H 0.97001 * 120.00240 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47455 * 60.00021 * 15 13 3 30 30 H 1.09003 * 109.47449 * 299.99253 * 15 13 3 31 31 H 1.00908 * 110.99583 * 303.94914 * 16 15 13 32 32 H 1.09002 * 109.47043 * 299.99792 * 17 16 15 33 33 H 1.09001 * 109.47354 * 59.99854 * 17 16 15 34 34 H 1.09003 * 115.54795 * 29.32512 * 18 17 16 35 35 H 1.09001 * 117.49810 * 359.97438 * 19 18 17 36 36 H 1.08995 * 117.50134 * 145.01745 * 19 18 17 37 37 H 1.09004 * 117.49933 * 252.50827 * 20 19 18 38 38 H 1.09002 * 117.49788 * 107.49222 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1269 -3.6175 9 14 5.9135 2.0979 -3.4165 10 1 5.9774 0.8773 -4.2598 11 1 6.3924 3.2657 -4.1989 12 1 6.7735 1.9180 -2.2192 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9924 1.3058 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0776 1.5454 4.8802 18 6 2.4190 2.5116 6.0162 19 6 3.5746 2.1312 6.9440 20 6 2.1318 2.0504 7.4464 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.5815 1.6878 -2.0284 27 1 2.0953 3.1412 -1.1383 28 1 3.6751 3.5174 -4.4434 29 1 2.6229 0.4187 2.5298 30 1 0.9445 1.0113 2.5303 31 1 3.2580 2.5449 3.5218 32 1 1.0306 1.2517 4.9549 33 1 2.7094 0.6602 4.9543 34 1 2.2812 3.5692 5.7912 35 1 4.0914 1.1922 6.7454 36 1 4.1973 2.9384 7.3295 37 1 1.8052 2.8045 8.1625 38 1 1.6995 1.0584 7.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = -36.240753 kcal Electronic energy + Delta-G solvation = -17184.173603 eV Core-core repulsion = 14447.380828 eV Total energy + Delta-G solvation = -2736.792775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73309 -38.68574 -36.97238 -35.76478 -34.85374 -31.62853 -30.09002 -28.35451 -25.65581 -24.50335 -23.65937 -23.16626 -21.54613 -19.87891 -18.62457 -18.01967 -17.37714 -17.09099 -16.36943 -16.30129 -15.36116 -15.26560 -14.81827 -14.61912 -14.42474 -14.26194 -13.60510 -13.49805 -13.31082 -13.15144 -12.96656 -12.65710 -12.47486 -12.34006 -12.20987 -12.14564 -11.87165 -11.71529 -11.23354 -10.87507 -10.64382 -10.55742 -9.43300 -9.37506 -8.22178 -6.37550 1.35866 1.39257 1.49416 1.86384 2.24786 2.41892 2.90443 3.06986 3.23803 3.73542 3.89916 4.06497 4.10650 4.16057 4.34058 4.37770 4.46006 4.47681 4.64200 4.70684 4.81111 4.85937 4.94247 5.00184 5.05134 5.06088 5.22391 5.28203 5.33992 5.40438 5.58270 5.85366 6.00244 6.07050 6.30258 6.70810 6.83617 7.28803 7.52457 8.84910 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.005046 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.935210 B = 5548.150934 C = 6187.098743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.058 3.942 16 N -0.691 5.691 17 C 0.096 3.904 18 C -0.168 4.168 19 C -0.185 4.185 20 C -0.162 4.162 21 H 0.096 0.904 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.021 0.979 27 H -0.007 1.007 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.343 0.657 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -10.007 17.612 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.469 6.469 15 C -0.073 4.073 16 N -0.324 5.324 17 C -0.033 4.033 18 C -0.187 4.187 19 C -0.222 4.222 20 C -0.200 4.200 21 H 0.115 0.885 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.039 0.961 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.377 -9.030 17.421 20.104 hybrid contribution 1.556 -0.097 -0.854 1.778 sum -2.821 -9.127 16.566 19.123 Atomic orbital electron populations 1.22158 0.94613 1.03515 1.01643 1.21756 0.95308 0.81288 1.03929 1.48290 1.64090 1.15126 1.06148 1.18677 0.95286 0.91425 0.80510 1.21718 0.97871 1.32012 1.06566 0.92839 1.25886 1.02508 0.94420 0.96438 1.70059 1.37863 1.34196 1.14789 0.85388 0.78838 0.78207 0.78195 1.18710 1.20667 1.19761 1.21307 0.77352 0.86661 0.86577 1.90635 1.47717 1.20578 1.87939 1.21810 1.04289 0.94095 0.87143 1.60131 1.32336 1.38515 1.01389 1.21564 1.01676 0.94019 0.86000 1.22249 1.04938 1.00088 0.91407 1.23135 0.91707 1.03404 1.03932 1.23013 0.98260 1.03479 0.95233 0.88494 0.92137 0.94452 0.90985 0.88106 0.96105 0.98844 0.92410 0.90327 0.86140 0.83872 0.89680 0.93923 0.88616 0.88373 0.88693 0.88029 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.00 5.93 86.38 0.51 3.52 16 3 N -0.60 -26.03 2.46 -826.14 -2.03 -28.06 16 4 C 0.26 14.55 5.16 85.64 0.44 14.99 16 5 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.23 13.29 21.44 0.28 -56.95 16 9 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.49 21.02 7.71 87.65 0.68 21.69 16 14 O -0.59 -31.73 15.78 -3.03 -0.05 -31.78 16 15 C 0.06 1.67 4.72 85.55 0.40 2.07 16 16 N -0.69 -19.98 6.13 -517.93 -3.17 -23.15 16 17 C 0.10 1.96 5.97 86.30 0.51 2.47 16 18 C -0.17 -3.31 5.95 -10.80 -0.06 -3.38 16 19 C -0.18 -3.05 10.18 30.59 0.31 -2.74 16 20 C -0.16 -2.39 10.25 30.59 0.31 -2.07 16 21 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 23 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 25 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 26 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 27 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.08 1.85 7.40 -2.39 -0.02 1.83 16 30 H 0.12 2.81 7.19 -2.39 -0.02 2.80 16 31 H 0.34 10.97 8.43 -89.69 -0.76 10.21 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 0.76 7.87 -2.39 -0.02 0.75 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.10 1.50 8.03 -2.39 -0.02 1.48 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -74.75 318.72 1.88 -72.86 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.27 Total: 17.11 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.55 Total: 2.51 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.92 Total: -108.16 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.75 1.88 -72.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.622 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds