Wall clock time and date at job start Mon Mar 30 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47150 * 2 1 4 4 C 1.46501 * 120.00151 * 265.23910 * 3 2 1 5 5 C 1.50700 * 109.47229 * 270.00551 * 4 3 2 6 6 H 1.07997 * 119.99519 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00034 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99957 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99774 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47303 * 90.00110 * 9 7 5 11 11 H 1.48509 * 109.46599 * 209.99983 * 9 7 5 12 12 H 1.48499 * 109.47164 * 329.99315 * 9 7 5 13 13 C 1.34779 * 120.00196 * 85.23843 * 3 2 1 14 14 O 1.21283 * 119.99609 * 4.89344 * 13 3 2 15 15 C 1.50694 * 120.00064 * 184.88696 * 13 3 2 16 16 C 1.53002 * 109.46833 * 78.41597 * 15 13 3 17 17 N 1.46893 * 109.47397 * 318.41542 * 15 13 3 18 18 C 1.53001 * 109.47126 * 198.41326 * 15 13 3 19 19 C 1.52996 * 117.51616 * 111.28581 * 18 15 13 20 20 C 1.52998 * 117.49902 * 179.91602 * 18 15 13 21 21 H 1.09003 * 109.46717 * 304.95269 * 1 2 3 22 22 H 1.08995 * 109.46932 * 64.94593 * 1 2 3 23 23 H 1.09001 * 109.47139 * 184.95067 * 1 2 3 24 24 H 1.09000 * 109.46881 * 239.99776 * 2 1 3 25 25 H 1.08996 * 109.46681 * 120.00164 * 2 1 3 26 26 H 1.09004 * 109.46743 * 29.99993 * 4 3 2 27 27 H 1.08999 * 109.46981 * 149.99593 * 4 3 2 28 28 H 0.97001 * 120.00099 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46946 * 179.97438 * 16 15 13 30 30 H 1.08998 * 109.47135 * 299.99736 * 16 15 13 31 31 H 1.09000 * 109.47071 * 60.00362 * 16 15 13 32 32 H 1.00907 * 110.99935 * 175.84156 * 17 15 13 33 33 H 1.00898 * 111.00301 * 299.79769 * 17 15 13 34 34 H 1.08999 * 115.54921 * 325.58861 * 18 15 13 35 35 H 1.09003 * 117.49758 * 214.97141 * 19 18 15 36 36 H 1.08999 * 117.50163 * 359.97438 * 19 18 15 37 37 H 1.08997 * 117.50069 * 359.97438 * 20 18 15 38 38 H 1.09003 * 117.50079 * 144.97370 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3619 2.0368 -1.2643 5 6 3.8145 1.7895 -1.5800 6 1 4.4213 1.2030 -0.9060 7 6 4.3691 2.3128 -2.7288 8 7 5.6370 2.0974 -3.0040 9 14 3.3197 3.3277 -3.8941 10 1 3.3906 4.7590 -3.5049 11 1 3.8236 3.1664 -5.2817 12 1 1.9107 2.8643 -3.8223 13 6 2.1517 2.0489 1.1632 14 8 1.9528 1.4795 2.2154 15 6 2.5480 3.5028 1.1563 16 6 1.3306 4.3615 0.8076 17 7 3.6019 3.7183 0.1560 18 6 3.0699 3.8957 2.5398 19 6 4.5605 4.2156 2.6684 20 6 3.5276 5.3421 2.7376 21 1 -0.3633 0.5888 0.8423 22 1 -0.3633 0.4352 -0.9309 23 1 -0.3633 -1.0238 0.0887 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7421 1.6310 -2.0640 27 1 2.1863 3.1090 -1.1771 28 1 6.0271 2.4652 -3.8123 29 1 1.6172 5.4132 0.8031 30 1 0.9588 4.0816 -0.1780 31 1 0.5486 4.2016 1.5499 32 1 3.8376 4.6969 0.0841 33 1 4.4186 3.1642 0.3660 34 1 2.5868 3.4010 3.3824 35 1 5.0581 3.9313 3.5956 36 1 5.1698 4.1457 1.7673 37 1 3.4573 6.0137 1.8820 38 1 3.3453 5.7992 3.7102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:58 Heat of formation + Delta-G solvation = 6.904204 kcal Electronic energy + Delta-G solvation = -18790.518007 eV Core-core repulsion = 16055.596138 eV Total energy + Delta-G solvation = -2734.921869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92299 -37.42827 -35.22908 -33.27173 -32.34025 -30.17952 -28.78671 -27.33915 -24.46171 -22.92229 -22.30796 -22.08893 -19.79360 -17.70766 -16.87322 -16.29434 -16.13347 -15.16127 -14.54980 -14.41799 -14.26677 -13.84227 -13.17322 -12.85241 -12.69593 -12.29804 -12.16449 -11.95295 -11.69044 -11.53521 -11.45235 -11.23388 -11.06171 -10.80206 -10.52644 -10.31385 -10.15359 -10.09799 -9.85028 -9.40234 -8.97833 -8.45312 -7.64660 -7.56071 -5.97101 -3.88665 3.34130 3.35958 3.41194 3.42564 3.86073 4.08804 4.49951 4.86666 5.06887 5.10190 5.15377 5.33750 5.40608 5.57586 5.70627 5.74926 5.76534 5.82040 5.86709 5.98888 6.07899 6.15207 6.25769 6.25924 6.38816 6.43562 6.51474 6.61736 6.75780 7.15473 7.59218 7.76839 7.77616 8.15203 8.33026 8.64909 9.00285 9.07086 9.66110 11.16521 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.011559 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.474518 B = 2421.687288 C = 3261.672769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.578 5.578 4 C 0.209 3.791 5 C -0.486 4.486 6 H 0.068 0.932 7 C 0.074 3.926 8 N -0.909 5.909 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.271 1.271 13 C 0.531 3.469 14 O -0.576 6.576 15 C 0.131 3.869 16 C -0.133 4.133 17 N -0.791 5.791 18 C -0.165 4.165 19 C -0.184 4.184 20 C -0.180 4.180 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.011 0.989 27 H 0.068 0.932 28 H 0.260 0.740 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.326 0.674 33 H 0.359 0.641 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 4.677 6.431 10.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.307 5.307 4 C 0.088 3.912 5 C -0.525 4.525 6 H 0.086 0.914 7 C -0.127 4.127 8 N -0.549 5.549 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.196 1.196 13 C 0.318 3.682 14 O -0.456 6.456 15 C 0.034 3.966 16 C -0.191 4.191 17 N -0.326 5.326 18 C -0.185 4.185 19 C -0.222 4.222 20 C -0.217 4.217 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.178 0.822 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.385 4.093 6.262 10.512 hybrid contribution 0.272 0.921 0.006 0.960 sum -7.113 5.014 6.268 10.725 Atomic orbital electron populations 1.22119 0.97025 1.01277 1.01669 1.21269 0.93127 0.84155 1.02624 1.47938 1.61981 1.12648 1.08137 1.20172 0.96470 0.95072 0.79484 1.21092 0.93397 1.31564 1.06465 0.91371 1.24684 0.94525 0.95978 0.97486 1.69903 1.12030 1.46605 1.26374 0.86879 0.81013 0.81449 0.80220 1.20183 1.22121 1.19581 1.20110 0.76765 0.88030 0.83274 1.90573 1.53863 1.69577 1.31618 1.20342 0.94623 0.92821 0.88823 1.21784 0.96126 0.99057 1.02127 1.59668 1.14519 1.11645 1.46791 1.23064 0.97282 0.97883 1.00312 1.23082 0.92367 1.03222 1.03491 1.22913 1.04615 0.91546 1.02594 0.92862 0.92843 0.92399 0.90262 0.91315 0.97111 0.91485 0.93049 0.91937 0.91182 0.92377 0.86016 0.82185 0.86939 0.89096 0.88265 0.88886 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.21 37.16 0.38 -2.16 16 2 C 0.11 2.08 6.12 -4.04 -0.02 2.05 16 3 N -0.58 -11.92 2.47 -175.06 -0.43 -12.35 16 4 C 0.21 4.61 3.67 -5.19 -0.02 4.59 16 5 C -0.49 -12.39 7.30 -34.44 -0.25 -12.64 16 6 H 0.07 1.97 8.06 -52.49 -0.42 1.54 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -26.19 13.96 55.43 0.77 -25.42 16 9 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 13 C 0.53 10.85 6.58 -10.99 -0.07 10.78 16 14 O -0.58 -12.91 15.32 5.55 0.09 -12.82 16 15 C 0.13 2.24 0.63 -132.76 -0.08 2.16 16 16 C -0.13 -2.01 8.33 37.16 0.31 -1.70 16 17 N -0.79 -14.30 3.82 -0.20 0.00 -14.30 16 18 C -0.16 -2.58 4.91 -90.62 -0.45 -3.03 16 19 C -0.18 -2.64 9.62 -26.73 -0.26 -2.89 16 20 C -0.18 -2.29 9.42 -26.73 -0.25 -2.54 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 25 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 26 H 0.01 0.25 7.13 -51.93 -0.37 -0.12 16 27 H 0.07 1.44 3.55 -51.93 -0.18 1.25 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.06 0.81 7.29 -51.93 -0.38 0.44 16 30 H 0.07 1.12 6.55 -51.93 -0.34 0.78 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.33 5.26 7.94 -39.29 -0.31 4.95 16 33 H 0.36 7.18 6.54 -39.29 -0.26 6.93 16 34 H 0.11 1.93 7.32 -51.93 -0.38 1.55 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.47 6.15 -51.93 -0.32 1.16 16 37 H 0.09 1.11 7.21 -51.93 -0.37 0.74 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -29.04 296.50 -6.44 -35.48 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.85 Total: 12.75 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.81 Total: -3.53 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.34 Total: -52.07 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.04 -6.44 -35.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.384 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds