Wall clock time and date at job start Mon Mar 30 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47150 * 2 1 4 4 C 1.46501 * 120.00151 * 265.23910 * 3 2 1 5 5 C 1.50700 * 109.47229 * 270.00551 * 4 3 2 6 6 H 1.07997 * 119.99519 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00034 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99957 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99774 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47303 * 90.00110 * 9 7 5 11 11 H 1.48509 * 109.46599 * 209.99983 * 9 7 5 12 12 H 1.48499 * 109.47164 * 329.99315 * 9 7 5 13 13 C 1.34779 * 120.00196 * 85.23843 * 3 2 1 14 14 O 1.21283 * 119.99609 * 4.89344 * 13 3 2 15 15 C 1.50694 * 120.00064 * 184.88696 * 13 3 2 16 16 C 1.53002 * 109.46833 * 78.41597 * 15 13 3 17 17 N 1.46893 * 109.47397 * 318.41542 * 15 13 3 18 18 C 1.53001 * 109.47126 * 198.41326 * 15 13 3 19 19 C 1.52996 * 117.51616 * 111.28581 * 18 15 13 20 20 C 1.52998 * 117.49902 * 179.91602 * 18 15 13 21 21 H 1.09003 * 109.46717 * 304.95269 * 1 2 3 22 22 H 1.08995 * 109.46932 * 64.94593 * 1 2 3 23 23 H 1.09001 * 109.47139 * 184.95067 * 1 2 3 24 24 H 1.09000 * 109.46881 * 239.99776 * 2 1 3 25 25 H 1.08996 * 109.46681 * 120.00164 * 2 1 3 26 26 H 1.09004 * 109.46743 * 29.99993 * 4 3 2 27 27 H 1.08999 * 109.46981 * 149.99593 * 4 3 2 28 28 H 0.97001 * 120.00099 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46946 * 179.97438 * 16 15 13 30 30 H 1.08998 * 109.47135 * 299.99736 * 16 15 13 31 31 H 1.09000 * 109.47071 * 60.00362 * 16 15 13 32 32 H 1.00907 * 110.99935 * 175.84156 * 17 15 13 33 33 H 1.00898 * 111.00301 * 299.79769 * 17 15 13 34 34 H 1.08999 * 115.54921 * 325.58861 * 18 15 13 35 35 H 1.09003 * 117.49758 * 214.97141 * 19 18 15 36 36 H 1.08999 * 117.50163 * 359.97438 * 19 18 15 37 37 H 1.08997 * 117.50069 * 359.97438 * 20 18 15 38 38 H 1.09003 * 117.50079 * 144.97370 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3619 2.0368 -1.2643 5 6 3.8145 1.7895 -1.5800 6 1 4.4213 1.2030 -0.9060 7 6 4.3691 2.3128 -2.7288 8 7 5.6370 2.0974 -3.0040 9 14 3.3197 3.3277 -3.8941 10 1 3.3906 4.7590 -3.5049 11 1 3.8236 3.1664 -5.2817 12 1 1.9107 2.8643 -3.8223 13 6 2.1517 2.0489 1.1632 14 8 1.9528 1.4795 2.2154 15 6 2.5480 3.5028 1.1563 16 6 1.3306 4.3615 0.8076 17 7 3.6019 3.7183 0.1560 18 6 3.0699 3.8957 2.5398 19 6 4.5605 4.2156 2.6684 20 6 3.5276 5.3421 2.7376 21 1 -0.3633 0.5888 0.8423 22 1 -0.3633 0.4352 -0.9309 23 1 -0.3633 -1.0238 0.0887 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7421 1.6310 -2.0640 27 1 2.1863 3.1090 -1.1771 28 1 6.0271 2.4652 -3.8123 29 1 1.6172 5.4132 0.8031 30 1 0.9588 4.0816 -0.1780 31 1 0.5486 4.2016 1.5499 32 1 3.8376 4.6969 0.0841 33 1 4.4186 3.1642 0.3660 34 1 2.5868 3.4010 3.3824 35 1 5.0581 3.9313 3.5956 36 1 5.1698 4.1457 1.7673 37 1 3.4573 6.0137 1.8820 38 1 3.3453 5.7992 3.7102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:58 Heat of formation + Delta-G solvation = -11.699199 kcal Electronic energy + Delta-G solvation = -18791.324711 eV Core-core repulsion = 16055.596138 eV Total energy + Delta-G solvation = -2735.728573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41822 -38.78614 -36.93007 -34.67702 -34.22563 -31.71349 -30.16383 -29.13636 -25.81534 -24.37848 -24.11228 -23.17231 -21.19801 -19.23821 -18.83461 -17.82901 -17.58926 -16.59459 -16.21142 -15.89887 -15.74193 -15.38781 -14.61831 -14.48501 -14.15954 -13.94308 -13.61330 -13.45325 -13.06678 -12.98232 -12.78593 -12.57235 -12.42535 -12.28323 -12.23362 -11.91040 -11.82922 -11.44893 -11.30216 -11.06299 -10.54370 -10.48929 -9.30934 -9.07255 -8.04174 -5.99318 1.52329 1.53094 1.60511 1.76627 2.37898 2.54898 2.89633 3.32215 3.60765 3.67772 3.86188 3.97609 4.13376 4.20626 4.38906 4.49129 4.50377 4.55033 4.72497 4.83693 4.84873 4.87702 4.98664 5.01139 5.06561 5.17967 5.20784 5.26416 5.29549 5.41996 5.77061 5.92031 6.32178 6.42277 6.70874 6.81226 6.93845 7.40061 7.60197 9.12600 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.011559 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.474518 B = 2421.687288 C = 3261.672769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.103 3.897 3 N -0.585 5.585 4 C 0.220 3.780 5 C -0.469 4.469 6 H 0.022 0.978 7 C 0.024 3.976 8 N -0.957 5.957 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.305 1.305 12 H -0.253 1.253 13 C 0.522 3.478 14 O -0.601 6.601 15 C 0.134 3.866 16 C -0.129 4.129 17 N -0.800 5.800 18 C -0.183 4.183 19 C -0.193 4.193 20 C -0.146 4.146 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.339 0.661 33 H 0.345 0.655 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 6.566 6.284 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 N -0.314 5.314 4 C 0.099 3.901 5 C -0.508 4.508 6 H 0.040 0.960 7 C -0.172 4.172 8 N -0.600 5.600 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.232 1.232 12 H -0.177 1.177 13 C 0.310 3.690 14 O -0.483 6.483 15 C 0.038 3.962 16 C -0.187 4.187 17 N -0.334 5.334 18 C -0.204 4.204 19 C -0.230 4.230 20 C -0.183 4.183 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.209 5.991 6.132 12.581 hybrid contribution 0.887 0.228 0.138 0.926 sum -8.322 6.219 6.270 12.134 Atomic orbital electron populations 1.22000 0.94237 1.02929 1.01591 1.21427 0.95428 0.83288 1.01859 1.48030 1.62108 1.13376 1.07872 1.19990 0.93934 0.96088 0.80137 1.21095 0.94598 1.29912 1.05210 0.95984 1.25372 0.95381 0.97280 0.99161 1.70063 1.14207 1.48572 1.27133 0.85891 0.80014 0.80551 0.77273 1.18571 1.23183 1.17690 1.20791 0.76049 0.89477 0.82683 1.90550 1.54921 1.70541 1.32313 1.20338 0.95204 0.91000 0.89661 1.21787 0.95094 1.00019 1.01776 1.59538 1.14068 1.12350 1.47445 1.22886 0.98106 1.00728 0.98683 1.23110 0.91816 1.04694 1.03386 1.23019 1.01129 0.89939 1.04219 0.93774 0.92086 0.89765 0.90575 0.92564 0.96867 0.89910 0.93305 0.89319 0.91884 0.91769 0.84539 0.83806 0.88724 0.88639 0.89126 0.87413 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.21 71.98 0.73 -3.69 16 2 C 0.10 3.82 6.12 86.38 0.53 4.35 16 3 N -0.59 -23.99 2.47 -826.14 -2.04 -26.03 16 4 C 0.22 9.46 3.67 85.63 0.31 9.78 16 5 C -0.47 -24.13 7.30 25.60 0.19 -23.95 16 6 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 7 C 0.02 1.27 5.47 84.66 0.46 1.73 16 8 N -0.96 -56.18 13.96 21.45 0.30 -55.88 16 9 Si 0.94 40.94 27.47 68.60 1.88 42.82 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.25 -10.26 6.54 99.48 0.65 -9.61 16 13 C 0.52 21.25 6.58 87.65 0.58 21.82 16 14 O -0.60 -27.24 15.32 -3.04 -0.05 -27.28 16 15 C 0.13 4.45 0.63 2.78 0.00 4.45 16 16 C -0.13 -3.54 8.33 71.98 0.60 -2.94 16 17 N -0.80 -28.13 3.82 -154.54 -0.59 -28.72 16 18 C -0.18 -5.52 4.91 -10.80 -0.05 -5.58 16 19 C -0.19 -5.30 9.62 30.59 0.29 -5.01 16 20 C -0.15 -3.28 9.42 30.59 0.29 -2.99 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.08 2.82 8.04 -2.39 -0.02 2.80 16 25 H 0.06 2.20 7.50 -2.39 -0.02 2.18 16 26 H 0.01 0.58 7.13 -2.38 -0.02 0.56 16 27 H 0.08 3.36 3.55 -2.39 -0.01 3.35 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.09 1.95 7.29 -2.38 -0.02 1.94 16 30 H 0.06 1.82 6.55 -2.39 -0.02 1.80 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.34 10.26 7.94 -89.69 -0.71 9.55 16 33 H 0.35 14.01 6.54 -89.70 -0.59 13.43 16 34 H 0.09 3.22 7.32 -2.39 -0.02 3.20 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.66 6.15 -2.39 -0.01 2.65 16 37 H 0.11 2.13 7.21 -2.39 -0.02 2.11 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -63.18 296.50 3.16 -60.02 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.29 Total: 37.08 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 3.94 Total: -2.01 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -2.33 Total: -110.63 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.82 kcal Total: -63.18 3.16 -60.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.323 kcal (2) G-P(sol) polarization free energy of solvation -63.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds