Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 15 15 C 1.52999 * 109.47168 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47320 * 60.00057 * 15 14 13 17 17 C 1.50702 * 109.46626 * 60.00033 * 16 15 14 18 18 N 1.34774 * 120.00311 * 60.00178 * 17 16 15 19 19 O 1.21284 * 119.99916 * 240.00097 * 17 16 15 20 20 C 1.52999 * 109.47286 * 300.00255 * 16 15 14 21 21 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 22 22 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 23 23 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 1.00900 * 111.00155 * 151.04364 * 12 2 1 27 27 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 28 28 H 1.08993 * 109.47547 * 300.00371 * 14 13 12 29 29 H 1.08999 * 109.46672 * 60.00157 * 14 13 12 30 30 H 1.09001 * 109.46966 * 300.00320 * 15 14 13 31 31 H 1.09002 * 109.47247 * 180.02562 * 15 14 13 32 32 H 1.08998 * 109.47458 * 180.02562 * 16 15 14 33 33 H 0.97000 * 119.99563 * 359.97438 * 18 17 16 34 34 H 0.97002 * 120.00333 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47125 * 299.99813 * 20 16 15 36 36 H 1.09002 * 109.47490 * 179.97438 * 20 16 15 37 37 H 1.09003 * 109.47283 * 299.99526 * 21 13 12 38 38 H 1.09001 * 109.47373 * 60.00182 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 3.4112 0.9807 2.3224 15 6 3.4769 1.9332 3.5179 16 6 3.3718 1.1303 4.8160 17 6 4.5122 0.1482 4.8929 18 7 5.7850 0.5915 4.8864 19 8 4.2847 -1.0412 4.9607 20 6 2.0432 0.3720 4.8406 21 6 1.9772 -0.5801 3.6452 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.6955 1.1524 -3.4842 26 1 2.9173 -1.1206 1.0285 27 1 1.2577 0.9327 2.2907 28 1 4.2360 0.2704 2.3784 29 1 3.4862 1.5523 1.3973 30 1 2.6520 2.6435 3.4622 31 1 4.4233 2.4737 3.5002 32 1 3.4181 1.8089 5.6678 33 1 5.9669 1.5427 4.8319 34 1 6.5190 -0.0406 4.9363 35 1 1.2183 1.0823 4.7849 36 1 1.9684 -0.2004 5.7652 37 1 1.0306 -1.1203 3.6628 38 1 2.8021 -1.2904 3.7014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038091887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -61.285559 kcal Electronic energy + Delta-G solvation = -18080.004315 eV Core-core repulsion = 15342.125516 eV Total energy + Delta-G solvation = -2737.878799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31912 -37.43090 -34.94632 -33.77981 -32.37689 -30.33926 -29.72395 -26.78112 -25.10148 -23.08820 -22.35874 -20.75395 -19.53784 -19.26865 -17.22244 -16.58155 -16.16887 -15.62860 -14.83844 -14.48574 -13.97108 -13.90242 -13.50448 -13.08896 -12.76242 -12.48909 -12.00862 -11.86662 -11.81817 -11.29562 -10.96212 -10.85793 -10.84099 -10.39342 -10.36599 -10.27952 -10.07331 -9.89315 -9.71177 -9.57150 -9.28139 -8.75841 -8.43723 -7.11003 -5.99036 -4.04749 2.70881 3.30376 3.38256 3.43227 3.54676 4.43327 4.72597 4.82405 4.91270 5.21207 5.32215 5.43051 5.48470 5.58569 5.69747 5.79011 5.90080 6.07515 6.14369 6.24790 6.34592 6.52103 6.59081 6.72059 6.83091 6.97716 7.04789 7.22388 7.31204 7.32274 7.61099 7.84075 7.97281 8.31844 8.33979 8.50989 8.78022 9.08228 9.61195 11.07180 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.005780 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.462897 B = 4842.963813 C = 5085.188738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.684 5.684 13 C 0.091 3.909 14 C -0.150 4.150 15 C -0.105 4.105 16 C -0.108 4.108 17 C 0.524 3.476 18 N -0.860 5.860 19 O -0.533 6.533 20 C -0.097 4.097 21 C -0.119 4.119 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.003 0.997 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.398 0.602 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 4.615 14.413 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.313 5.313 13 C -0.020 4.020 14 C -0.189 4.189 15 C -0.144 4.144 16 C -0.130 4.130 17 C 0.309 3.691 18 N -0.424 5.424 19 O -0.409 6.409 20 C -0.136 4.136 21 C -0.157 4.157 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.785 3.731 14.450 16.006 hybrid contribution 1.547 0.479 -1.177 2.002 sum 7.332 4.210 13.273 15.737 Atomic orbital electron populations 1.21724 0.98063 0.99291 0.99199 1.19094 0.92446 0.92334 0.85759 0.98189 1.21345 1.31024 1.12432 0.90565 0.92285 1.24915 0.95102 0.95045 0.98995 1.69911 1.36623 1.23274 1.23216 0.86495 0.78618 0.79644 0.82977 1.19782 1.20983 1.21169 1.60771 1.32021 1.32570 1.05921 1.21527 0.94803 0.93471 0.92184 1.22344 1.00118 0.98751 0.97707 1.21500 1.02019 0.97667 0.93181 1.21389 0.94726 0.96953 0.99888 1.20694 0.84277 0.89738 0.74350 1.43935 1.07953 1.11951 1.78558 1.90692 1.84319 1.17337 1.48556 1.21338 0.94130 0.98305 0.99798 1.21741 1.03488 0.98278 0.92200 0.90197 0.95065 0.97770 0.93086 0.85313 0.91505 0.92500 0.91365 0.90731 0.92225 0.89099 0.77337 0.77215 0.91600 0.91777 0.91935 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 9.17 37.16 0.34 -2.85 16 2 C 0.21 5.45 2.42 -68.87 -0.17 5.29 16 3 H 0.00 0.01 7.11 -51.93 -0.37 -0.36 16 4 C -0.51 -14.44 8.59 -34.44 -0.30 -14.73 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.75 11.30 55.43 0.63 -25.12 16 8 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.68 -15.26 6.05 -100.95 -0.61 -15.87 16 13 C 0.09 1.68 2.28 -67.71 -0.15 1.53 16 14 C -0.15 -2.42 4.94 -26.73 -0.13 -2.55 16 15 C -0.11 -1.24 5.35 -26.73 -0.14 -1.38 16 16 C -0.11 -1.22 3.01 -91.77 -0.28 -1.50 16 17 C 0.52 6.66 5.91 -10.99 -0.06 6.59 16 18 N -0.86 -7.51 8.77 31.22 0.27 -7.23 16 19 O -0.53 -9.00 14.49 5.55 0.08 -8.92 16 20 C -0.10 -1.29 5.09 -26.75 -0.14 -1.43 16 21 C -0.12 -2.00 5.23 -26.75 -0.14 -2.14 16 22 H 0.08 2.21 6.05 -51.93 -0.31 1.90 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.33 7.41 7.96 -39.29 -0.31 7.09 16 27 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 28 H 0.06 0.95 7.20 -51.93 -0.37 0.57 16 29 H 0.07 1.23 7.43 -51.93 -0.39 0.84 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.40 2.33 8.25 -40.82 -0.34 2.00 16 34 H 0.40 3.14 8.93 -40.82 -0.36 2.78 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.60 5.51 -51.93 -0.29 1.31 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -31.64 294.05 -7.44 -39.08 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.96 Total: 8.59 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.26 Total: -11.56 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.29 Total: -48.22 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.64 -7.44 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.205 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds