Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 15 15 C 1.52999 * 109.47168 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47320 * 60.00057 * 15 14 13 17 17 C 1.50702 * 109.46626 * 60.00033 * 16 15 14 18 18 N 1.34774 * 120.00311 * 60.00178 * 17 16 15 19 19 O 1.21284 * 119.99916 * 240.00097 * 17 16 15 20 20 C 1.52999 * 109.47286 * 300.00255 * 16 15 14 21 21 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 22 22 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 23 23 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 1.00900 * 111.00155 * 151.04364 * 12 2 1 27 27 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 28 28 H 1.08993 * 109.47547 * 300.00371 * 14 13 12 29 29 H 1.08999 * 109.46672 * 60.00157 * 14 13 12 30 30 H 1.09001 * 109.46966 * 300.00320 * 15 14 13 31 31 H 1.09002 * 109.47247 * 180.02562 * 15 14 13 32 32 H 1.08998 * 109.47458 * 180.02562 * 16 15 14 33 33 H 0.97000 * 119.99563 * 359.97438 * 18 17 16 34 34 H 0.97002 * 120.00333 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47125 * 299.99813 * 20 16 15 36 36 H 1.09002 * 109.47490 * 179.97438 * 20 16 15 37 37 H 1.09003 * 109.47283 * 299.99526 * 21 13 12 38 38 H 1.09001 * 109.47373 * 60.00182 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 3.4112 0.9807 2.3224 15 6 3.4769 1.9332 3.5179 16 6 3.3718 1.1303 4.8160 17 6 4.5122 0.1482 4.8929 18 7 5.7850 0.5915 4.8864 19 8 4.2847 -1.0412 4.9607 20 6 2.0432 0.3720 4.8406 21 6 1.9772 -0.5801 3.6452 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.6955 1.1524 -3.4842 26 1 2.9173 -1.1206 1.0285 27 1 1.2577 0.9327 2.2907 28 1 4.2360 0.2704 2.3784 29 1 3.4862 1.5523 1.3973 30 1 2.6520 2.6435 3.4622 31 1 4.4233 2.4737 3.5002 32 1 3.4181 1.8089 5.6678 33 1 5.9669 1.5427 4.8319 34 1 6.5190 -0.0406 4.9363 35 1 1.2183 1.0823 4.7849 36 1 1.9684 -0.2004 5.7652 37 1 1.0306 -1.1203 3.6628 38 1 2.8021 -1.2904 3.7014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038091887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -85.634015 kcal Electronic energy + Delta-G solvation = -18081.060143 eV Core-core repulsion = 15342.125516 eV Total energy + Delta-G solvation = -2738.934628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38221 -38.81356 -36.61608 -34.78457 -34.17578 -31.49884 -31.41632 -28.47048 -27.23875 -24.25185 -23.55033 -22.22327 -21.39103 -20.29435 -18.61599 -17.93336 -17.35578 -16.80539 -16.76135 -15.85955 -15.64120 -15.13572 -14.73521 -14.53225 -14.48437 -13.90549 -13.48710 -13.33893 -13.06364 -12.94063 -12.78179 -12.70222 -12.30616 -12.23096 -12.07310 -11.97712 -11.69879 -11.22484 -11.07687 -10.84363 -10.62358 -10.56903 -10.37821 -8.92499 -8.14060 -6.27769 1.38846 1.40959 1.52875 1.76340 2.40466 2.73240 3.13869 3.59799 3.76992 3.84376 4.08985 4.11159 4.39144 4.45512 4.51503 4.64150 4.68293 4.82952 4.86664 4.99958 5.07363 5.09344 5.14587 5.24761 5.27079 5.32026 5.45762 5.54211 5.60885 5.72917 5.88268 6.03027 6.22966 6.52557 6.56869 6.83633 7.01756 7.42675 7.48023 8.91639 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.005780 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.462897 B = 4842.963813 C = 5085.188738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.219 3.781 3 H -0.025 1.025 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.689 5.689 13 C 0.089 3.911 14 C -0.143 4.143 15 C -0.098 4.098 16 C -0.102 4.102 17 C 0.517 3.483 18 N -0.841 5.841 19 O -0.583 6.583 20 C -0.096 4.096 21 C -0.111 4.111 22 H 0.058 0.942 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.263 0.737 26 H 0.326 0.674 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.416 0.584 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 5.712 15.416 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.111 3.889 3 H -0.007 1.007 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.318 5.318 13 C -0.021 4.021 14 C -0.182 4.182 15 C -0.136 4.136 16 C -0.123 4.123 17 C 0.303 3.697 18 N -0.405 5.405 19 O -0.463 6.463 20 C -0.134 4.134 21 C -0.150 4.150 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.247 0.753 34 H 0.234 0.766 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.838 4.873 15.473 17.605 hybrid contribution 1.244 0.148 -1.463 1.925 sum 8.082 5.020 14.011 16.936 Atomic orbital electron populations 1.21560 0.98047 0.98569 0.98984 1.18868 0.92370 0.90972 0.86727 1.00742 1.21624 1.31488 1.12595 0.91922 0.92934 1.25701 0.95154 0.95716 1.01889 1.70020 1.37194 1.24261 1.24091 0.85465 0.78168 0.78576 0.79155 1.19493 1.20461 1.20296 1.60717 1.31884 1.33495 1.05714 1.21611 0.95953 0.93156 0.91358 1.22188 0.98072 0.98969 0.98958 1.21491 1.04321 0.96795 0.91021 1.21401 0.92900 0.96853 1.01114 1.21010 0.85617 0.89251 0.73827 1.43778 1.06932 1.13199 1.76599 1.90682 1.85151 1.19365 1.51140 1.21322 0.96175 0.98048 0.97839 1.21628 1.01813 0.98562 0.92951 0.92293 0.95857 0.95998 0.92794 0.85763 0.92518 0.93313 0.93846 0.89728 0.88938 0.84746 0.75307 0.76590 0.90025 0.91372 0.93539 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.92 9.17 71.98 0.66 -5.26 16 2 C 0.22 11.62 2.42 44.17 0.11 11.72 16 3 H -0.02 -1.43 7.11 -2.39 -0.02 -1.44 16 4 C -0.54 -30.76 8.59 25.60 0.22 -30.54 16 5 H 0.05 3.00 7.62 -2.91 -0.02 2.98 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.51 11.30 21.45 0.24 -53.26 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 N -0.69 -31.64 6.05 -473.31 -2.86 -34.51 16 13 C 0.09 3.33 2.28 44.92 0.10 3.43 16 14 C -0.14 -4.53 4.94 30.59 0.15 -4.37 16 15 C -0.10 -2.01 5.35 30.59 0.16 -1.84 16 16 C -0.10 -1.96 3.01 -11.54 -0.03 -1.99 16 17 C 0.52 12.02 5.91 87.66 0.52 12.54 16 18 N -0.84 -12.29 8.77 -173.53 -1.52 -13.81 16 19 O -0.58 -19.37 14.49 -3.04 -0.04 -19.42 16 20 C -0.10 -2.34 5.09 30.58 0.16 -2.18 16 21 C -0.11 -3.75 5.23 30.58 0.16 -3.59 16 22 H 0.06 3.33 6.05 -2.39 -0.01 3.31 16 23 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.02 1.01 7.43 -2.39 -0.02 0.99 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.33 15.18 7.96 -89.69 -0.71 14.46 16 27 H 0.06 2.22 7.11 -2.39 -0.02 2.20 16 28 H 0.05 1.61 7.20 -2.39 -0.02 1.59 16 29 H 0.04 1.58 7.43 -2.39 -0.02 1.56 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.34 7.57 -2.39 -0.02 1.32 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 3.22 8.25 -92.71 -0.76 2.46 16 34 H 0.40 5.46 8.93 -92.71 -0.83 4.64 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 2.56 5.51 -2.39 -0.01 2.55 16 Total: -1.00 -70.17 294.05 -0.74 -70.91 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -1.23 Total: 24.37 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 2.65 Total: -20.82 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -4.14 Total: -101.59 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.04 Total: -19.42 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.17 -0.74 -70.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.728 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds