Wall clock time and date at job start Mon Mar 30 2020 03:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47093 * 2 1 4 4 C 1.46495 * 119.99865 * 270.00081 * 3 2 1 5 5 C 1.50703 * 109.46990 * 269.99618 * 4 3 2 6 6 H 1.07998 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 119.99937 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47642 * 89.99389 * 9 7 5 11 11 H 1.48506 * 109.47212 * 209.99579 * 9 7 5 12 12 H 1.48505 * 109.47192 * 329.99354 * 9 7 5 13 13 C 1.34772 * 120.00039 * 89.99364 * 3 2 1 14 14 O 1.21287 * 120.00199 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00263 * 0.02562 * 13 3 2 16 16 C 1.52995 * 109.47251 * 179.97438 * 15 13 3 17 17 H 1.08997 * 109.90748 * 306.09875 * 16 15 13 18 18 C 1.54000 * 109.91457 * 185.00112 * 16 15 13 19 19 C 1.54598 * 105.22213 * 239.36966 * 18 16 15 20 20 C 1.55092 * 102.84998 * 338.15300 * 19 18 16 21 21 N 1.47897 * 109.92057 * 67.41249 * 16 15 13 22 22 H 1.08996 * 109.47686 * 299.99682 * 1 2 3 23 23 H 1.09004 * 109.47135 * 60.00371 * 1 2 3 24 24 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47424 * 239.99912 * 2 1 3 26 26 H 1.09004 * 109.47135 * 119.99629 * 2 1 3 27 27 H 1.08998 * 109.47633 * 29.99717 * 4 3 2 28 28 H 1.09006 * 109.47186 * 149.99590 * 4 3 2 29 29 H 0.97003 * 119.99776 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47083 * 59.99285 * 15 13 3 31 31 H 1.09007 * 109.47136 * 300.00109 * 15 13 3 32 32 H 1.09002 * 110.31026 * 358.33720 * 18 16 15 33 33 H 1.09000 * 110.30915 * 120.40749 * 18 16 15 34 34 H 1.09003 * 110.72246 * 96.45403 * 19 18 16 35 35 H 1.09003 * 110.72391 * 219.72762 * 19 18 16 36 36 H 1.09003 * 110.59460 * 278.87433 * 20 19 18 37 37 H 1.08995 * 110.83386 * 155.84768 * 20 19 18 38 38 H 1.00899 * 111.00037 * 24.16651 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1265 -3.6176 9 14 5.9133 2.0965 -3.4169 10 1 5.9762 0.8759 -4.2604 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9158 -2.2199 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9921 1.3061 2.4723 16 6 2.3238 2.2434 3.6352 17 1 3.3379 2.6275 3.5246 18 6 2.1915 1.4889 4.9711 19 6 1.1216 2.2662 5.7720 20 6 1.1460 3.6683 5.1096 21 7 1.3579 3.3628 3.6715 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6877 -2.0284 28 1 2.0954 3.1411 -1.1384 29 1 3.6754 3.5170 -4.4435 30 1 2.6225 0.4189 2.5299 31 1 0.9442 1.0115 2.5302 32 1 1.8629 0.4645 4.7962 33 1 3.1419 1.4949 5.5048 34 1 0.1417 1.8028 5.6574 35 1 1.3984 2.3301 6.8243 36 1 1.9707 4.2635 5.5019 37 1 0.1970 4.1836 5.2576 38 1 0.4903 3.1064 3.2247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042170168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:06 Heat of formation + Delta-G solvation = -42.309210 kcal Electronic energy + Delta-G solvation = -17815.888463 eV Core-core repulsion = 15078.832539 eV Total energy + Delta-G solvation = -2737.055923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48110 -37.93956 -35.12131 -32.80655 -31.35033 -30.00076 -29.85921 -27.45645 -25.59774 -22.96315 -22.49342 -21.50163 -20.11053 -18.29166 -16.46083 -16.22905 -16.01916 -15.21072 -15.04065 -14.82455 -14.17554 -13.69200 -13.49613 -13.27273 -12.95694 -12.43103 -12.07341 -11.98665 -11.64458 -11.48817 -11.38107 -11.22228 -11.07113 -10.97928 -10.81074 -10.67232 -10.53974 -10.42672 -10.06260 -9.55908 -8.68311 -8.37973 -8.34190 -7.53368 -5.98516 -4.02865 3.33243 3.39961 3.44204 3.60205 4.00783 4.32166 4.49695 4.69540 4.76478 5.02328 5.16356 5.22667 5.35494 5.35882 5.44048 5.51230 5.54153 5.69710 5.74454 5.76326 5.84587 5.88595 5.90511 6.06012 6.14499 6.27523 6.40532 6.51785 6.98637 7.16955 7.53305 7.55763 7.66387 7.98959 8.31240 8.56143 8.98153 9.26682 9.62346 11.09462 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.005951 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.764860 B = 4703.913865 C = 5092.245860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.603 5.603 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.501 3.499 14 O -0.519 6.519 15 C -0.146 4.146 16 C 0.091 3.909 17 H 0.092 0.908 18 C -0.150 4.150 19 C -0.158 4.158 20 C 0.040 3.960 21 N -0.652 5.652 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -6.928 15.105 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.287 3.713 14 O -0.395 6.395 15 C -0.187 4.187 16 C -0.019 4.019 17 H 0.110 0.890 18 C -0.190 4.190 19 C -0.197 4.197 20 C -0.090 4.090 21 N -0.279 5.279 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.833 -5.630 14.734 16.817 hybrid contribution 0.383 -1.151 -0.118 1.219 sum -5.450 -6.781 14.616 17.009 Atomic orbital electron populations 1.22221 0.97056 1.01188 1.02211 1.21362 0.93308 0.84589 1.02401 1.48264 1.64424 1.13054 1.07848 1.19215 0.96020 0.93675 0.78300 1.21456 0.97040 1.31626 1.06137 0.92596 1.24934 0.97766 0.94983 0.96469 1.69938 1.35646 1.33566 1.14320 0.86514 0.84843 0.77607 0.78547 1.20724 1.21116 1.19941 1.20198 0.79082 0.87144 0.84854 1.90723 1.44415 1.17470 1.86862 1.22109 1.02716 0.99611 0.94245 1.22148 0.98991 0.89130 0.91638 0.88957 1.22936 0.99458 0.99676 0.96886 1.23150 0.98956 0.97616 1.00019 1.23180 1.01521 0.95671 0.88596 1.62754 1.14253 1.38680 1.12231 0.93226 0.92082 0.92378 0.90199 0.91970 0.95316 0.93917 0.92804 0.89116 0.89938 0.91414 0.91236 0.91800 0.91229 0.90413 0.91103 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.84 2.46 -175.06 -0.43 -13.27 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.50 10.45 7.56 -10.99 -0.08 10.37 16 14 O -0.52 -13.31 15.04 5.55 0.08 -13.22 16 15 C -0.15 -2.14 3.39 -27.89 -0.09 -2.23 16 16 C 0.09 1.31 2.91 -66.64 -0.19 1.12 16 17 H 0.09 1.58 7.93 -51.93 -0.41 1.16 16 18 C -0.15 -1.60 6.56 -25.37 -0.17 -1.77 16 19 C -0.16 -1.51 7.08 -24.79 -0.18 -1.69 16 20 C 0.04 0.46 7.55 -1.81 -0.01 0.44 16 21 N -0.65 -9.71 6.73 -103.05 -0.69 -10.40 16 22 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 26 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 27 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 31 H 0.08 1.03 7.05 -51.93 -0.37 0.66 16 32 H 0.07 0.64 7.69 -51.93 -0.40 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.33 4.76 8.31 -39.29 -0.33 4.43 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -33.44 308.32 -7.82 -41.27 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.33 Total: 1.30 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.82 Total: -1.17 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.39 Total: -50.03 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.44 -7.82 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042170168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.043 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds