Wall clock time and date at job start Mon Mar 30 2020 03:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47093 * 2 1 4 4 C 1.46495 * 119.99865 * 270.00081 * 3 2 1 5 5 C 1.50703 * 109.46990 * 269.99618 * 4 3 2 6 6 H 1.07998 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 119.99937 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47642 * 89.99389 * 9 7 5 11 11 H 1.48506 * 109.47212 * 209.99579 * 9 7 5 12 12 H 1.48505 * 109.47192 * 329.99354 * 9 7 5 13 13 C 1.34772 * 120.00039 * 89.99364 * 3 2 1 14 14 O 1.21287 * 120.00199 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00263 * 0.02562 * 13 3 2 16 16 C 1.52995 * 109.47251 * 179.97438 * 15 13 3 17 17 H 1.08997 * 109.90748 * 306.09875 * 16 15 13 18 18 C 1.54000 * 109.91457 * 185.00112 * 16 15 13 19 19 C 1.54598 * 105.22213 * 239.36966 * 18 16 15 20 20 C 1.55092 * 102.84998 * 338.15300 * 19 18 16 21 21 N 1.47897 * 109.92057 * 67.41249 * 16 15 13 22 22 H 1.08996 * 109.47686 * 299.99682 * 1 2 3 23 23 H 1.09004 * 109.47135 * 60.00371 * 1 2 3 24 24 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47424 * 239.99912 * 2 1 3 26 26 H 1.09004 * 109.47135 * 119.99629 * 2 1 3 27 27 H 1.08998 * 109.47633 * 29.99717 * 4 3 2 28 28 H 1.09006 * 109.47186 * 149.99590 * 4 3 2 29 29 H 0.97003 * 119.99776 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47083 * 59.99285 * 15 13 3 31 31 H 1.09007 * 109.47136 * 300.00109 * 15 13 3 32 32 H 1.09002 * 110.31026 * 358.33720 * 18 16 15 33 33 H 1.09000 * 110.30915 * 120.40749 * 18 16 15 34 34 H 1.09003 * 110.72246 * 96.45403 * 19 18 16 35 35 H 1.09003 * 110.72391 * 219.72762 * 19 18 16 36 36 H 1.09003 * 110.59460 * 278.87433 * 20 19 18 37 37 H 1.08995 * 110.83386 * 155.84768 * 20 19 18 38 38 H 1.00899 * 111.00037 * 24.16651 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1265 -3.6176 9 14 5.9133 2.0965 -3.4169 10 1 5.9762 0.8759 -4.2604 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9158 -2.2199 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9921 1.3061 2.4723 16 6 2.3238 2.2434 3.6352 17 1 3.3379 2.6275 3.5246 18 6 2.1915 1.4889 4.9711 19 6 1.1216 2.2662 5.7720 20 6 1.1460 3.6683 5.1096 21 7 1.3579 3.3628 3.6715 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6877 -2.0284 28 1 2.0954 3.1411 -1.1384 29 1 3.6754 3.5170 -4.4435 30 1 2.6225 0.4189 2.5299 31 1 0.9442 1.0115 2.5302 32 1 1.8629 0.4645 4.7962 33 1 3.1419 1.4949 5.5048 34 1 0.1417 1.8028 5.6574 35 1 1.3984 2.3301 6.8243 36 1 1.9707 4.2635 5.5019 37 1 0.1970 4.1836 5.2576 38 1 0.4903 3.1064 3.2247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042170168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:06 Heat of formation + Delta-G solvation = -66.366225 kcal Electronic energy + Delta-G solvation = -17816.931653 eV Core-core repulsion = 15078.832539 eV Total energy + Delta-G solvation = -2738.099114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91334 -39.16180 -36.81244 -34.92014 -32.61815 -31.48136 -30.79259 -29.22797 -27.02401 -24.73679 -23.96769 -22.47631 -21.11032 -19.87118 -18.59966 -17.77599 -17.37434 -16.65062 -16.48011 -16.09007 -15.76278 -14.95549 -14.62669 -14.52281 -14.38048 -14.17948 -13.59403 -13.29426 -13.19194 -12.95786 -12.69743 -12.66162 -12.50668 -12.30417 -12.16389 -12.06105 -11.88528 -11.77566 -11.69215 -11.41722 -10.63483 -10.39836 -9.37825 -9.33804 -8.21122 -6.36384 1.35342 1.38973 1.49218 1.99324 2.34145 2.50630 3.07629 3.32548 3.72138 3.82562 3.94604 4.14399 4.17633 4.27379 4.32743 4.48671 4.61915 4.65248 4.69683 4.71774 4.94499 5.01613 5.02368 5.05243 5.07860 5.13214 5.21980 5.26251 5.38543 5.41585 5.60663 5.92097 6.02328 6.09553 6.51902 6.72590 6.91713 7.30750 7.64348 8.85636 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.005951 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.764860 B = 4703.913865 C = 5092.245860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.491 3.509 14 O -0.580 6.580 15 C -0.128 4.128 16 C 0.089 3.911 17 H 0.052 0.948 18 C -0.141 4.141 19 C -0.147 4.147 20 C 0.037 3.963 21 N -0.686 5.686 22 H 0.061 0.939 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.017 0.983 28 H -0.008 1.008 29 H 0.266 0.734 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -9.497 16.904 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.280 3.720 14 O -0.460 6.460 15 C -0.168 4.168 16 C -0.021 4.021 17 H 0.071 0.929 18 C -0.180 4.180 19 C -0.186 4.186 20 C -0.092 4.092 21 N -0.314 5.314 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.035 0.965 28 H 0.010 0.990 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.066 -8.253 16.555 19.467 hybrid contribution 0.411 -0.303 -0.686 0.855 sum -5.655 -8.556 15.868 18.894 Atomic orbital electron populations 1.22148 0.94708 1.03373 1.01583 1.21712 0.95218 0.81554 1.03719 1.48314 1.64566 1.15010 1.06253 1.18620 0.95054 0.91372 0.80773 1.21732 0.97982 1.31825 1.06472 0.92989 1.25888 1.02479 0.94471 0.96476 1.70064 1.37830 1.34306 1.14789 0.85400 0.78905 0.78220 0.78173 1.18651 1.20662 1.19835 1.21356 0.77431 0.86718 0.86500 1.90689 1.47020 1.20392 1.87872 1.22090 1.05191 0.99557 0.89962 1.22064 0.96946 0.89416 0.93688 0.92937 1.22866 1.00305 1.00340 0.94514 1.23092 0.99346 0.95672 1.00473 1.23233 1.01788 0.97217 0.86997 1.62665 1.14511 1.39603 1.14621 0.91969 0.94654 0.88680 0.91460 0.88045 0.96463 0.98962 0.92466 0.86458 0.86628 0.89106 0.90832 0.90344 0.89532 0.91440 0.89827 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.61 -26.31 2.46 -826.15 -2.03 -28.34 16 4 C 0.26 14.77 5.16 85.63 0.44 15.21 16 5 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 9 Si 0.97 46.10 29.54 68.60 2.03 48.12 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.49 20.73 7.56 87.66 0.66 21.39 16 14 O -0.58 -31.30 15.04 -3.05 -0.05 -31.35 16 15 C -0.13 -3.46 3.39 29.85 0.10 -3.36 16 16 C 0.09 2.47 2.91 45.06 0.13 2.60 16 17 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 18 C -0.14 -2.55 6.56 31.48 0.21 -2.35 16 19 C -0.15 -2.31 7.08 31.85 0.23 -2.08 16 20 C 0.04 0.79 7.55 86.70 0.65 1.45 16 21 N -0.69 -20.23 6.73 -479.93 -3.23 -23.46 16 22 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 23 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 26 H 0.10 2.30 6.44 -2.38 -0.02 2.29 16 27 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 28 H -0.01 -0.51 7.42 -2.38 -0.02 -0.52 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.12 2.58 7.40 -2.39 -0.02 2.56 16 31 H 0.12 2.40 7.05 -2.38 -0.02 2.38 16 32 H 0.09 1.26 7.69 -2.39 -0.02 1.24 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.33 9.33 8.31 -89.69 -0.75 8.58 16 Total: -1.00 -78.00 308.32 1.67 -76.33 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.29 Total: 14.31 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.38 Total: 2.04 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.97 Total: -109.46 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.00 1.67 -76.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042170168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.967 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds