Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47519 * 2 1 4 4 C 1.50706 * 109.47223 * 240.00265 * 2 1 3 5 5 H 1.08001 * 119.99615 * 326.64545 * 4 2 1 6 6 C 1.37874 * 120.00157 * 146.64641 * 4 2 1 7 7 N 1.31516 * 120.00098 * 183.07121 * 6 4 2 8 8 Si 1.86803 * 119.99918 * 3.07684 * 6 4 2 9 9 H 1.48501 * 109.47354 * 84.78540 * 8 6 4 10 10 H 1.48496 * 109.46744 * 204.78173 * 8 6 4 11 11 H 1.48493 * 109.47253 * 324.78111 * 8 6 4 12 12 N 1.46897 * 109.47169 * 120.00333 * 2 1 3 13 13 C 1.46901 * 111.00358 * 52.82506 * 12 2 1 14 14 C 1.50703 * 109.46808 * 79.68955 * 13 12 2 15 15 N 1.34774 * 119.99777 * 188.16883 * 14 13 12 16 16 O 1.21277 * 119.99969 * 8.16349 * 14 13 12 17 17 C 1.46904 * 110.99846 * 288.86945 * 12 2 1 18 18 C 1.54266 * 110.03338 * 297.16805 * 17 12 2 19 19 C 1.54894 * 104.19379 * 217.10364 * 18 17 12 20 20 C 1.54889 * 102.75058 * 37.94215 * 19 18 17 21 21 C 1.53874 * 110.03338 * 179.97438 * 17 12 2 22 22 H 1.09000 * 109.47204 * 52.53042 * 1 2 3 23 23 H 1.09000 * 109.47651 * 172.53075 * 1 2 3 24 24 H 1.09000 * 109.47131 * 292.53447 * 1 2 3 25 25 H 0.97000 * 119.99835 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47199 * 199.68993 * 13 12 2 27 27 H 1.08997 * 109.46424 * 319.69080 * 13 12 2 28 28 H 0.97006 * 119.99913 * 359.97438 * 15 14 13 29 29 H 0.96998 * 120.00247 * 180.02562 * 15 14 13 30 30 H 1.09004 * 110.01101 * 58.61222 * 17 12 2 31 31 H 1.08993 * 110.48772 * 335.77941 * 18 17 12 32 32 H 1.08994 * 110.48660 * 98.42955 * 18 17 12 33 33 H 1.09003 * 110.75778 * 279.62783 * 19 18 17 34 34 H 1.08996 * 110.91459 * 156.33034 * 19 18 17 35 35 H 1.08993 * 110.48786 * 203.37908 * 20 19 18 36 36 H 1.09005 * 110.60006 * 80.78753 * 20 19 18 37 37 H 1.08997 * 110.03492 * 238.57681 * 21 17 12 38 38 H 1.09010 * 110.03340 * 359.95344 * 21 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4757 -1.5405 -1.6398 6 6 3.2024 -0.3006 -1.8337 7 7 3.6094 -0.8808 -2.9416 8 14 4.2099 1.0787 -1.0772 9 1 5.1056 0.5216 -0.0320 10 1 5.0262 1.7313 -2.1321 11 1 3.2988 2.0795 -0.4663 12 7 2.0196 -0.6925 1.1994 13 6 1.4138 -2.0252 1.3221 14 6 2.1258 -2.9868 0.4058 15 7 1.6395 -4.2307 0.2251 16 8 3.1363 -2.6413 -0.1690 17 6 1.7769 0.1092 2.4062 18 6 2.5617 1.4349 2.3265 19 6 3.0300 1.6870 3.7813 20 6 3.3807 0.2629 4.2792 21 6 2.2971 -0.6363 3.6477 22 1 -0.3633 0.6252 -0.8156 23 1 -0.3634 -1.0189 -0.1336 24 1 -0.3633 0.3938 0.9492 25 1 4.4324 -0.5922 -3.3661 26 1 1.5026 -2.3712 2.3518 27 1 0.3607 -1.9723 1.0459 28 1 0.8314 -4.5071 0.6851 29 1 2.0979 -4.8498 -0.3643 30 1 0.7109 0.3111 2.5117 31 1 3.4195 1.3311 1.6622 32 1 1.9124 2.2429 1.9894 33 1 2.2250 2.1173 4.3772 34 1 3.9095 2.3306 3.8009 35 1 3.3291 0.2156 5.3669 36 1 4.3710 -0.0318 3.9319 37 1 1.4839 -0.7950 4.3559 38 1 2.7289 -1.5934 3.3549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042428855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = -22.421910 kcal Electronic energy + Delta-G solvation = -18992.847863 eV Core-core repulsion = 16256.654317 eV Total energy + Delta-G solvation = -2736.193545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.18615 -37.57437 -35.14061 -32.58443 -32.02337 -29.92038 -28.46051 -27.43880 -25.50264 -24.45380 -20.93895 -19.81766 -19.60541 -18.13874 -16.99019 -16.31359 -16.09027 -15.57779 -14.94874 -14.21294 -14.04546 -13.57415 -12.99596 -12.96899 -12.71273 -12.41543 -12.25351 -11.43635 -11.42186 -11.27664 -10.83764 -10.71426 -10.65251 -10.50140 -10.41674 -10.21882 -10.13034 -9.62446 -9.44702 -8.86364 -8.69645 -8.54790 -8.11335 -7.09894 -5.78927 -3.72378 3.49935 3.56896 3.65265 3.96120 4.32415 4.72352 4.93274 4.95524 5.02748 5.27655 5.71247 5.75505 5.84775 5.88191 5.88872 5.94901 6.00112 6.05210 6.11961 6.18165 6.26793 6.28982 6.34136 6.39938 6.53359 6.55769 6.63364 6.75862 7.01058 7.14274 7.70184 7.79930 8.07682 8.36074 8.41189 8.76379 9.19532 9.56825 9.88493 11.35121 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.013145 C = 0.009742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.139336 B = 2129.524941 C = 2873.331128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.160 3.840 3 H 0.058 0.942 4 C -0.472 4.472 5 H 0.063 0.937 6 C 0.098 3.902 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.272 1.272 10 H -0.304 1.304 11 H -0.270 1.270 12 N -0.507 5.507 13 C 0.042 3.958 14 C 0.497 3.503 15 N -0.881 5.881 16 O -0.451 6.451 17 C 0.073 3.927 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.122 4.122 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.027 0.973 25 H 0.257 0.743 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.384 0.616 29 H 0.391 0.609 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -0.578 13.217 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.055 3.945 3 H 0.076 0.924 4 C -0.510 4.510 5 H 0.081 0.919 6 C -0.105 4.105 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.197 1.197 10 H -0.232 1.232 11 H -0.196 1.196 12 N -0.232 5.232 13 C -0.089 4.089 14 C 0.279 3.721 15 N -0.448 5.448 16 O -0.318 6.318 17 C -0.036 4.036 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.160 4.160 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.210 0.790 29 H 0.220 0.780 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.009 -0.167 12.721 13.339 hybrid contribution -0.588 0.263 0.379 0.747 sum -4.597 0.097 13.100 13.883 Atomic orbital electron populations 1.22358 1.00855 1.00473 0.98948 1.20116 0.89409 0.96194 0.88771 0.92445 1.20543 1.07741 1.16614 1.06149 0.91869 1.24776 0.96158 0.95795 0.93753 1.69893 1.22660 1.42179 1.18694 0.86846 0.80692 0.82304 0.78626 1.19743 1.23151 1.19629 1.63024 1.58176 1.00388 1.01654 1.21786 0.97065 0.92019 0.98061 1.20358 0.86837 0.81752 0.83130 1.43936 1.31935 1.15835 1.53119 1.90899 1.23491 1.73848 1.43545 1.22306 0.96531 0.93637 0.91124 1.22504 1.00656 0.96139 0.96386 1.22463 1.00268 0.96794 0.96567 1.22286 0.99370 0.95156 0.98847 1.22332 0.97847 0.99717 0.96100 0.92985 0.93570 0.95436 0.93295 0.90419 0.92803 0.79009 0.77977 0.94821 0.90390 0.92360 0.92067 0.92059 0.92493 0.91577 0.92720 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.36 37.15 0.31 -3.05 16 2 C 0.16 3.75 1.68 -68.87 -0.12 3.63 16 3 H 0.06 1.41 3.85 -51.93 -0.20 1.21 16 4 C -0.47 -13.34 5.55 -34.44 -0.19 -13.53 16 5 H 0.06 1.97 7.51 -52.49 -0.39 1.58 16 6 C 0.10 2.96 4.87 -17.82 -0.09 2.87 16 7 N -0.90 -28.72 13.96 55.43 0.77 -27.94 16 8 Si 0.89 23.58 25.66 -169.99 -4.36 19.21 16 9 H -0.27 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 11 H -0.27 -6.67 5.91 56.52 0.33 -6.34 16 12 N -0.51 -10.71 3.88 -220.20 -0.85 -11.56 16 13 C 0.04 0.78 4.93 -4.97 -0.02 0.76 16 14 C 0.50 10.49 6.77 -10.99 -0.07 10.41 16 15 N -0.88 -14.02 8.87 31.22 0.28 -13.74 16 16 O -0.45 -12.24 14.12 5.56 0.08 -12.16 16 17 C 0.07 1.28 2.49 -66.59 -0.17 1.11 16 18 C -0.12 -2.11 5.09 -25.07 -0.13 -2.24 16 19 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 20 C -0.12 -1.65 6.83 -25.04 -0.17 -1.82 16 21 C -0.12 -1.82 5.62 -25.58 -0.14 -1.96 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.91 6.36 -51.93 -0.33 0.58 16 24 H 0.03 0.48 6.46 -51.93 -0.34 0.14 16 25 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 26 H 0.08 1.22 5.71 -51.93 -0.30 0.92 16 27 H 0.05 0.95 5.37 -51.93 -0.28 0.67 16 28 H 0.38 4.55 8.83 -40.82 -0.36 4.19 16 29 H 0.39 6.07 8.93 -40.82 -0.36 5.70 16 30 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16 31 H 0.08 1.63 5.67 -51.93 -0.29 1.34 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.19 6.36 -51.92 -0.33 0.86 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -34.32 282.57 -6.47 -40.80 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.69 Total: 6.87 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.96 Total: -5.73 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.20 Total: -53.25 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.36 Total: 19.21 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.32 -6.47 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042428855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.374 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds