Wall clock time and date at job start Mon Mar 30 2020 03:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47519 * 2 1 4 4 C 1.50706 * 109.47223 * 240.00265 * 2 1 3 5 5 H 1.08001 * 119.99615 * 326.64545 * 4 2 1 6 6 C 1.37874 * 120.00157 * 146.64641 * 4 2 1 7 7 N 1.31516 * 120.00098 * 183.07121 * 6 4 2 8 8 Si 1.86803 * 119.99918 * 3.07684 * 6 4 2 9 9 H 1.48501 * 109.47354 * 84.78540 * 8 6 4 10 10 H 1.48496 * 109.46744 * 204.78173 * 8 6 4 11 11 H 1.48493 * 109.47253 * 324.78111 * 8 6 4 12 12 N 1.46897 * 109.47169 * 120.00333 * 2 1 3 13 13 C 1.46901 * 111.00358 * 52.82506 * 12 2 1 14 14 C 1.50703 * 109.46808 * 79.68955 * 13 12 2 15 15 N 1.34774 * 119.99777 * 188.16883 * 14 13 12 16 16 O 1.21277 * 119.99969 * 8.16349 * 14 13 12 17 17 C 1.46904 * 110.99846 * 288.86945 * 12 2 1 18 18 C 1.54266 * 110.03338 * 297.16805 * 17 12 2 19 19 C 1.54894 * 104.19379 * 217.10364 * 18 17 12 20 20 C 1.54889 * 102.75058 * 37.94215 * 19 18 17 21 21 C 1.53874 * 110.03338 * 179.97438 * 17 12 2 22 22 H 1.09000 * 109.47204 * 52.53042 * 1 2 3 23 23 H 1.09000 * 109.47651 * 172.53075 * 1 2 3 24 24 H 1.09000 * 109.47131 * 292.53447 * 1 2 3 25 25 H 0.97000 * 119.99835 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47199 * 199.68993 * 13 12 2 27 27 H 1.08997 * 109.46424 * 319.69080 * 13 12 2 28 28 H 0.97006 * 119.99913 * 359.97438 * 15 14 13 29 29 H 0.96998 * 120.00247 * 180.02562 * 15 14 13 30 30 H 1.09004 * 110.01101 * 58.61222 * 17 12 2 31 31 H 1.08993 * 110.48772 * 335.77941 * 18 17 12 32 32 H 1.08994 * 110.48660 * 98.42955 * 18 17 12 33 33 H 1.09003 * 110.75778 * 279.62783 * 19 18 17 34 34 H 1.08996 * 110.91459 * 156.33034 * 19 18 17 35 35 H 1.08993 * 110.48786 * 203.37908 * 20 19 18 36 36 H 1.09005 * 110.60006 * 80.78753 * 20 19 18 37 37 H 1.08997 * 110.03492 * 238.57681 * 21 17 12 38 38 H 1.09010 * 110.03340 * 359.95344 * 21 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4757 -1.5405 -1.6398 6 6 3.2024 -0.3006 -1.8337 7 7 3.6094 -0.8808 -2.9416 8 14 4.2099 1.0787 -1.0772 9 1 5.1056 0.5216 -0.0320 10 1 5.0262 1.7313 -2.1321 11 1 3.2988 2.0795 -0.4663 12 7 2.0196 -0.6925 1.1994 13 6 1.4138 -2.0252 1.3221 14 6 2.1258 -2.9868 0.4058 15 7 1.6395 -4.2307 0.2251 16 8 3.1363 -2.6413 -0.1690 17 6 1.7769 0.1092 2.4062 18 6 2.5617 1.4349 2.3265 19 6 3.0300 1.6870 3.7813 20 6 3.3807 0.2629 4.2792 21 6 2.2971 -0.6363 3.6477 22 1 -0.3633 0.6252 -0.8156 23 1 -0.3634 -1.0189 -0.1336 24 1 -0.3633 0.3938 0.9492 25 1 4.4324 -0.5922 -3.3661 26 1 1.5026 -2.3712 2.3518 27 1 0.3607 -1.9723 1.0459 28 1 0.8314 -4.5071 0.6851 29 1 2.0979 -4.8498 -0.3643 30 1 0.7109 0.3111 2.5117 31 1 3.4195 1.3311 1.6622 32 1 1.9124 2.2429 1.9894 33 1 2.2250 2.1173 4.3772 34 1 3.9095 2.3306 3.8009 35 1 3.3291 0.2156 5.3669 36 1 4.3710 -0.0318 3.9319 37 1 1.4839 -0.7950 4.3559 38 1 2.7289 -1.5934 3.3549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042428855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:28 Heat of formation + Delta-G solvation = -50.756105 kcal Electronic energy + Delta-G solvation = -18994.076525 eV Core-core repulsion = 16256.654317 eV Total energy + Delta-G solvation = -2737.422208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73055 -39.08964 -36.67941 -34.35337 -33.96931 -31.60148 -29.76050 -28.74342 -27.38338 -26.08617 -22.49829 -21.22473 -21.03688 -19.66838 -19.03362 -17.78394 -17.59561 -17.17476 -16.33912 -16.06457 -15.60813 -15.05868 -14.73997 -14.55809 -14.28755 -14.16737 -13.92302 -13.19537 -13.01310 -12.85852 -12.58557 -12.18747 -11.91441 -11.85698 -11.79149 -11.69039 -11.49849 -11.37184 -11.30138 -10.82850 -10.63628 -10.26365 -10.07036 -8.66163 -8.07531 -5.99343 1.32855 1.43185 1.48086 2.32887 2.52023 2.84696 3.26360 3.74023 3.79190 3.86180 4.13902 4.43155 4.44313 4.50618 4.58661 4.65336 4.68899 4.74039 4.77794 4.80987 4.86640 4.95263 5.05305 5.10457 5.21535 5.26564 5.32738 5.44696 5.49821 5.55479 5.80102 6.25496 6.31924 6.57069 6.76011 6.99168 7.03169 7.63074 8.02095 9.10915 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.013145 C = 0.009742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.139336 B = 2129.524941 C = 2873.331128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.162 3.838 3 H 0.047 0.953 4 C -0.447 4.447 5 H 0.023 0.977 6 C 0.038 3.962 7 N -0.951 5.951 8 Si 0.938 3.062 9 H -0.289 1.289 10 H -0.309 1.309 11 H -0.241 1.241 12 N -0.532 5.532 13 C 0.044 3.956 14 C 0.490 3.510 15 N -0.859 5.859 16 O -0.525 6.525 17 C 0.071 3.929 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.118 4.118 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.251 0.749 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.408 0.592 29 H 0.394 0.606 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 0.078 16.780 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.485 4.485 5 H 0.042 0.958 6 C -0.159 4.159 7 N -0.593 5.593 8 Si 0.768 3.232 9 H -0.216 1.216 10 H -0.238 1.238 11 H -0.165 1.165 12 N -0.257 5.257 13 C -0.087 4.087 14 C 0.274 3.726 15 N -0.427 5.427 16 O -0.398 6.398 17 C -0.037 4.037 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.156 4.156 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.238 0.762 29 H 0.223 0.777 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.135 0.467 16.338 17.458 hybrid contribution -0.057 -0.067 -0.642 0.648 sum -6.192 0.400 15.696 16.878 Atomic orbital electron populations 1.22221 0.98077 1.00851 1.00687 1.19901 0.91471 0.94955 0.88035 0.93489 1.20718 1.06191 1.14296 1.07322 0.95839 1.25459 0.97729 0.98369 0.94352 1.70046 1.23432 1.44907 1.20941 0.85993 0.79450 0.80658 0.77097 1.21586 1.23753 1.16501 1.62507 1.59281 1.01643 1.02273 1.21881 0.97044 0.90295 0.99461 1.21044 0.85968 0.83030 0.82574 1.43699 1.32311 1.14403 1.52275 1.90888 1.26667 1.75619 1.46597 1.22449 0.97660 0.93272 0.90312 1.22568 0.99395 0.96651 0.98154 1.22450 1.01298 0.97175 0.94297 1.22297 0.97964 0.94702 1.00648 1.22327 0.99066 0.98705 0.95461 0.93395 0.93365 0.92054 0.94030 0.86726 0.91113 0.76228 0.77691 0.92958 0.94241 0.91989 0.89346 0.91689 0.89407 0.93703 0.89293 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 8.36 71.98 0.60 -5.37 16 2 C 0.16 7.43 1.68 44.17 0.07 7.50 16 3 H 0.05 2.25 3.85 -2.39 -0.01 2.24 16 4 C -0.45 -25.79 5.55 25.60 0.14 -25.64 16 5 H 0.02 1.51 7.51 -2.91 -0.02 1.49 16 6 C 0.04 2.36 4.87 84.65 0.41 2.77 16 7 N -0.95 -64.09 13.96 21.45 0.30 -63.79 16 8 Si 0.94 50.48 25.66 68.60 1.76 52.24 16 9 H -0.29 -16.17 7.11 99.48 0.71 -15.46 16 10 H -0.31 -16.66 7.11 99.48 0.71 -15.95 16 11 H -0.24 -11.56 5.91 99.48 0.59 -10.97 16 12 N -0.53 -21.45 3.88 -850.57 -3.30 -24.75 16 13 C 0.04 1.53 4.93 85.56 0.42 1.95 16 14 C 0.49 20.43 6.77 87.66 0.59 21.03 16 15 N -0.86 -26.30 8.87 -173.54 -1.54 -27.84 16 16 O -0.53 -29.35 14.12 -3.02 -0.04 -29.39 16 17 C 0.07 2.23 2.49 45.64 0.11 2.35 16 18 C -0.13 -4.24 5.09 31.67 0.16 -4.08 16 19 C -0.11 -2.79 6.91 31.89 0.22 -2.57 16 20 C -0.12 -2.84 6.83 31.69 0.22 -2.62 16 21 C -0.12 -2.99 5.62 31.34 0.18 -2.81 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.05 1.77 6.36 -2.39 -0.02 1.75 16 24 H 0.06 1.88 6.46 -2.39 -0.02 1.87 16 25 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 26 H 0.12 3.11 5.71 -2.39 -0.01 3.10 16 27 H 0.07 2.23 5.37 -2.39 -0.01 2.22 16 28 H 0.41 8.58 8.83 -92.70 -0.82 7.77 16 29 H 0.39 12.05 8.93 -92.71 -0.83 11.22 16 30 H 0.05 1.47 6.52 -2.39 -0.02 1.46 16 31 H 0.04 1.60 5.67 -2.39 -0.01 1.58 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.72 6.36 -2.38 -0.02 1.71 16 Total: -1.00 -79.74 282.57 -0.37 -80.11 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.68 Total: 20.93 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 3.13 Total: -7.51 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.54 Total: -116.37 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.04 Total: -29.39 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.76 Total: 52.24 kcal Total: -79.74 -0.37 -80.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042428855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.358 kcal (2) G-P(sol) polarization free energy of solvation -79.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds