Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46729 * 2 1 4 4 C 1.50701 * 109.47027 * 119.99985 * 2 1 3 5 5 O 1.21276 * 119.99986 * 110.48421 * 4 2 1 6 6 N 1.34780 * 120.00114 * 290.48220 * 4 2 1 7 7 C 1.46494 * 120.00185 * 185.42489 * 6 4 2 8 8 C 1.46505 * 119.99723 * 5.42369 * 6 4 2 9 9 N 1.46895 * 109.47068 * 239.99964 * 2 1 3 10 10 C 1.46902 * 111.00276 * 72.44267 * 9 2 1 11 11 C 1.50696 * 109.47229 * 155.98768 * 10 9 2 12 12 H 1.07999 * 120.00283 * 354.97030 * 11 10 9 13 13 C 1.37883 * 119.99837 * 174.97194 * 11 10 9 14 14 N 1.31518 * 119.99589 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00273 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47009 * 89.99673 * 15 13 11 17 17 H 1.48488 * 109.47604 * 210.00245 * 15 13 11 18 18 H 1.48502 * 109.46965 * 330.00653 * 15 13 11 19 19 C 1.46902 * 111.00493 * 308.48599 * 9 2 1 20 20 C 1.52995 * 117.50089 * 140.67387 * 19 9 2 21 21 C 1.52999 * 117.49774 * 72.04847 * 19 9 2 22 22 H 1.09006 * 109.46684 * 187.04100 * 1 2 3 23 23 H 1.08995 * 109.47481 * 307.03889 * 1 2 3 24 24 H 1.08995 * 109.47136 * 67.04313 * 1 2 3 25 25 H 1.08997 * 109.47393 * 89.99811 * 7 6 4 26 26 H 1.09002 * 109.47018 * 210.00455 * 7 6 4 27 27 H 1.09003 * 109.46817 * 329.99921 * 7 6 4 28 28 H 1.09003 * 109.47188 * 0.25608 * 8 6 4 29 29 H 1.08992 * 109.47072 * 120.25902 * 8 6 4 30 30 H 1.09001 * 109.46999 * 240.25791 * 8 6 4 31 31 H 1.08996 * 109.46631 * 275.99018 * 10 9 2 32 32 H 1.09001 * 109.46947 * 35.98348 * 10 9 2 33 33 H 0.97002 * 119.99497 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.54749 * 286.38533 * 19 9 2 35 35 H 1.08999 * 117.49676 * 359.97438 * 20 19 9 36 36 H 1.08999 * 117.49835 * 145.02074 * 20 19 9 37 37 H 1.09000 * 117.50312 * 214.98070 * 21 19 9 38 38 H 1.09000 * 117.50013 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5810 -1.7871 1.1276 6 7 1.8719 -0.1492 2.4453 7 6 2.4636 -0.7803 3.6276 8 6 1.1058 1.0919 2.5835 9 7 2.0197 -0.6925 -1.1994 10 6 1.8051 0.1227 -2.4025 11 6 2.7876 -0.2874 -3.4690 12 1 3.5523 -1.0170 -3.2470 13 6 2.7103 0.2688 -4.7283 14 7 1.7793 1.1577 -4.9984 15 14 3.9285 -0.2390 -6.0501 16 1 3.3884 -1.4007 -6.8011 17 1 4.1477 0.8950 -6.9833 18 1 5.2179 -0.6153 -5.4167 19 6 1.3906 -2.0126 -1.3389 20 6 1.0007 -2.4640 -2.7479 21 6 -0.0829 -2.0531 -1.7489 22 1 -0.3633 -1.0200 0.1260 23 1 -0.3634 0.6190 0.8202 24 1 -0.3633 0.4008 -0.9462 25 1 3.4698 -0.3909 3.7822 26 1 1.8506 -0.5606 4.5018 27 1 2.5104 -1.8590 3.4786 28 1 0.7430 1.4058 1.6047 29 1 0.2586 0.9238 3.2483 30 1 1.7460 1.8695 3.0002 31 1 0.7891 -0.0281 -2.7670 32 1 1.9513 1.1751 -2.1591 33 1 1.7251 1.5493 -5.8842 34 1 1.7409 -2.7761 -0.6443 35 1 1.2107 -1.7813 -3.5712 36 1 1.0947 -3.5248 -2.9805 37 1 -0.7019 -2.8435 -1.3245 38 1 -0.5854 -1.1003 -1.9155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 24.694798 kcal Electronic energy + Delta-G solvation = -18414.491245 eV Core-core repulsion = 15680.340834 eV Total energy + Delta-G solvation = -2734.150411 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04784 -37.95373 -35.28614 -33.35035 -32.78307 -30.01053 -27.78269 -26.58734 -26.19853 -23.23368 -22.40744 -21.35027 -19.58102 -18.34638 -16.85616 -16.21920 -15.83667 -15.48696 -15.16388 -14.63840 -14.12111 -13.77343 -13.40780 -12.97204 -12.75933 -12.54286 -12.28703 -12.14882 -12.05082 -11.69043 -11.38719 -11.22540 -10.81044 -10.63813 -10.56176 -10.23661 -9.89611 -9.78417 -9.35585 -9.23397 -8.90598 -8.52566 -8.40558 -7.11357 -6.01235 -3.99615 3.02286 3.17184 3.34656 3.40868 3.47153 4.43696 4.65314 4.78370 5.00093 5.10558 5.30099 5.31357 5.35451 5.44253 5.52802 5.61876 5.64528 5.82830 5.83541 5.89385 5.93553 6.01278 6.10626 6.37735 6.50805 6.57678 6.76754 6.86639 7.14792 7.29615 7.48210 7.51350 7.88089 8.11509 8.21635 8.51010 8.59912 9.09299 9.61771 11.08343 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.006769 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.703961 B = 4135.411753 C = 4242.556337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 H 0.098 0.902 4 C 0.524 3.476 5 O -0.520 6.520 6 N -0.631 5.631 7 C 0.088 3.912 8 C 0.069 3.931 9 N -0.486 5.486 10 C 0.185 3.815 11 C -0.493 4.493 12 H 0.066 0.934 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.041 3.959 20 C -0.179 4.179 21 C -0.239 4.239 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.012 0.988 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -0.245 13.721 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.044 4.044 3 H 0.116 0.884 4 C 0.312 3.688 5 O -0.394 6.394 6 N -0.368 5.368 7 C -0.055 4.055 8 C -0.075 4.075 9 N -0.208 5.208 10 C 0.060 3.940 11 C -0.532 4.532 12 H 0.084 0.916 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.068 4.068 20 C -0.216 4.216 21 C -0.278 4.278 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.518 -0.778 13.567 14.037 hybrid contribution -0.320 0.081 -0.749 0.819 sum -3.839 -0.697 12.818 13.398 Atomic orbital electron populations 1.22884 0.96029 1.03103 1.02667 1.21634 0.93812 0.98335 0.90583 0.88426 1.20914 0.78348 0.85583 0.83934 1.90614 1.42025 1.21070 1.85688 1.47768 1.55170 1.26402 1.07431 1.21521 0.97600 0.99563 0.86829 1.22062 0.95535 0.86027 1.03834 1.61999 1.54454 1.02058 1.02247 1.19929 0.96738 0.91740 0.85549 1.21145 1.14250 1.23424 0.94344 0.91571 1.24971 0.95949 0.95295 0.98547 1.69955 1.33586 1.28813 1.21706 0.86515 0.81757 0.77945 0.81389 1.20691 1.21403 1.19750 1.22620 0.91625 0.93731 0.98838 1.23628 1.00877 1.01464 0.95603 1.23628 0.93982 1.02522 1.07657 0.91017 0.92375 0.90837 0.93164 0.91842 0.90689 0.89062 0.92402 0.92458 0.97072 0.95997 0.92981 0.86536 0.84409 0.90518 0.90547 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 7.05 37.16 0.26 -2.64 16 2 C 0.07 1.25 1.85 -68.86 -0.13 1.12 16 3 H 0.10 1.71 7.14 -51.93 -0.37 1.34 16 4 C 0.52 9.31 6.87 -10.98 -0.08 9.24 16 5 O -0.52 -11.04 13.95 5.56 0.08 -10.96 16 6 N -0.63 -8.57 3.27 -189.52 -0.62 -9.19 16 7 C 0.09 1.00 10.52 59.84 0.63 1.63 16 8 C 0.07 0.68 9.78 59.85 0.59 1.26 16 9 N -0.49 -10.88 4.37 -221.53 -0.97 -11.85 16 10 C 0.19 4.67 3.63 -4.98 -0.02 4.65 16 11 C -0.49 -13.68 6.78 -34.44 -0.23 -13.91 16 12 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 15 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.04 0.88 5.00 -67.71 -0.34 0.54 16 20 C -0.18 -3.82 9.20 -26.73 -0.25 -4.06 16 21 C -0.24 -4.52 7.15 -26.73 -0.19 -4.71 16 22 H 0.07 1.14 5.80 -51.93 -0.30 0.84 16 23 H 0.06 0.70 5.44 -51.93 -0.28 0.42 16 24 H 0.07 1.24 5.88 -51.93 -0.31 0.93 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.07 0.96 7.35 -51.93 -0.38 0.58 16 28 H 0.09 0.93 3.96 -51.93 -0.21 0.73 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.01 0.30 5.08 -51.93 -0.26 0.04 16 32 H 0.02 0.58 7.62 -51.93 -0.40 0.19 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.12 2.55 6.60 -51.93 -0.34 2.21 16 35 H 0.14 3.43 4.89 -51.93 -0.25 3.17 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.82 4.88 -51.93 -0.25 1.56 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -31.47 288.56 -6.73 -38.20 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.43 Total: 3.54 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.15 Total: -5.50 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.85 Total: -46.32 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.47 -6.73 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.894 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds