Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50701 * 109.46787 * 240.00380 * 2 1 3 5 5 O 1.21287 * 119.99430 * 247.47383 * 4 2 1 6 6 N 1.34777 * 120.00558 * 67.47616 * 4 2 1 7 7 C 1.46494 * 120.00179 * 185.89739 * 6 4 2 8 8 C 1.46498 * 119.99525 * 5.89204 * 6 4 2 9 9 N 1.46898 * 109.47308 * 120.00115 * 2 1 3 10 10 C 1.46897 * 111.00134 * 300.00316 * 9 2 1 11 11 C 1.50700 * 109.46926 * 301.50547 * 10 9 2 12 12 H 1.08004 * 119.99791 * 3.46691 * 11 10 9 13 13 C 1.37876 * 120.00157 * 183.46813 * 11 10 9 14 14 N 1.31511 * 120.00194 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99959 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47409 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47161 * 120.00028 * 15 13 11 18 18 H 1.48496 * 109.47439 * 240.00131 * 15 13 11 19 19 C 1.46896 * 110.99957 * 176.04293 * 9 2 1 20 20 C 1.53004 * 117.49810 * 198.02752 * 19 9 2 21 21 C 1.52994 * 60.00156 * 252.51455 * 20 19 9 22 22 H 1.09000 * 109.46792 * 306.62671 * 1 2 3 23 23 H 1.09000 * 109.46973 * 66.62623 * 1 2 3 24 24 H 1.08997 * 109.47145 * 186.62650 * 1 2 3 25 25 H 1.09010 * 109.47246 * 60.00027 * 7 6 4 26 26 H 1.08994 * 109.47356 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47042 * 299.99838 * 7 6 4 28 28 H 1.09007 * 109.47026 * 84.53329 * 8 6 4 29 29 H 1.08997 * 109.47172 * 204.52807 * 8 6 4 30 30 H 1.09000 * 109.47788 * 324.53033 * 8 6 4 31 31 H 1.09001 * 109.47402 * 61.50186 * 10 9 2 32 32 H 1.08998 * 109.47235 * 181.50802 * 10 9 2 33 33 H 0.96999 * 119.99960 * 180.02562 * 14 13 11 34 34 H 1.08996 * 115.56531 * 343.72226 * 19 9 2 35 35 H 1.08997 * 117.49712 * 145.02164 * 20 19 9 36 36 H 1.08997 * 117.49949 * 0.02562 * 20 19 9 37 37 H 1.09000 * 117.49787 * 107.49145 * 21 20 19 38 38 H 1.08999 * 117.50335 * 252.51054 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6138 -1.7694 -1.1244 6 7 1.8354 -0.1688 -2.4489 7 6 2.2070 -0.9175 -3.6520 8 6 1.2496 1.1685 -2.5701 9 7 2.0198 -0.6925 1.1994 10 6 1.5487 -0.0265 2.4210 11 6 2.0202 1.4049 2.4265 12 1 2.5626 1.7979 1.5793 13 6 1.7591 2.2126 3.5129 14 7 1.0991 1.7338 4.5448 15 14 2.3442 3.9866 3.5199 16 1 3.0580 4.2775 2.2506 17 1 1.1748 4.8930 3.6485 18 1 3.2642 4.2000 4.6658 19 6 3.4851 -0.7946 1.1869 20 6 4.1292 -1.8286 2.1126 21 6 4.2357 -0.3378 2.4395 22 1 -0.3633 0.6131 0.8248 23 1 -0.3633 0.4077 -0.9433 24 1 -0.3633 -1.0208 0.1186 25 1 1.6472 -1.8523 -3.6857 26 1 1.9749 -0.3234 -4.5359 27 1 3.2750 -1.1342 -3.6297 28 1 2.0338 1.9190 -2.4703 29 1 0.7723 1.2691 -3.5448 30 1 0.5070 1.3124 -1.7853 31 1 0.4594 -0.0503 2.4509 32 1 1.9476 -0.5437 3.2937 33 1 0.9151 2.3022 5.3089 34 1 3.9608 -0.6171 0.2224 35 1 5.0285 -2.3315 1.7571 36 1 3.4655 -2.4334 2.7306 37 1 3.6422 0.0385 3.2727 38 1 5.2052 0.1403 2.2989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = 18.230997 kcal Electronic energy + Delta-G solvation = -18538.740738 eV Core-core repulsion = 15804.310035 eV Total energy + Delta-G solvation = -2734.430703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84473 -37.52792 -35.22469 -33.93952 -32.58621 -29.67872 -27.60329 -26.79664 -26.03034 -23.56110 -21.52487 -21.24371 -19.58758 -18.43277 -16.84396 -16.29694 -16.08222 -15.38074 -14.96078 -14.64875 -14.03331 -13.68341 -13.15904 -12.67603 -12.62833 -12.56161 -12.27560 -12.00652 -11.90673 -11.63459 -11.23095 -11.12991 -10.89876 -10.79588 -10.67725 -10.01166 -10.00863 -9.76817 -9.34731 -9.28005 -8.95790 -8.45383 -8.43425 -7.00654 -6.04564 -4.12700 3.08778 3.23402 3.25291 3.32922 3.35116 4.37517 4.72274 4.88752 5.10484 5.17711 5.27982 5.35925 5.42168 5.62392 5.71349 5.80325 5.83234 5.91608 5.95666 6.03713 6.12960 6.19110 6.47624 6.55421 6.59228 6.69518 6.78775 6.95800 7.27276 7.37605 7.54888 7.57828 7.87933 8.04642 8.26861 8.28161 8.64113 8.95361 9.51803 10.99259 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.008711 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.887638 B = 3213.493837 C = 3774.575553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.074 0.926 4 C 0.514 3.486 5 O -0.520 6.520 6 N -0.632 5.632 7 C 0.094 3.906 8 C 0.067 3.933 9 N -0.493 5.493 10 C 0.181 3.819 11 C -0.537 4.537 12 H 0.057 0.943 13 C 0.065 3.935 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.049 3.951 20 C -0.183 4.183 21 C -0.197 4.197 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -0.521 -12.440 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 H 0.091 0.909 4 C 0.302 3.698 5 O -0.394 6.394 6 N -0.368 5.368 7 C -0.049 4.049 8 C -0.076 4.076 9 N -0.216 5.216 10 C 0.057 3.943 11 C -0.576 4.576 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.713 3.287 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.060 4.060 20 C -0.222 4.222 21 C -0.235 4.235 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.005 -1.540 -12.212 12.309 hybrid contribution 0.714 1.979 0.000 2.103 sum 0.718 0.439 -12.212 12.241 Atomic orbital electron populations 1.21890 0.92896 1.02988 1.02066 1.21377 0.96579 0.96920 0.88644 0.90892 1.21149 0.78587 0.85720 0.84311 1.90662 1.40126 1.22626 1.86016 1.47827 1.64598 1.18190 1.06221 1.21515 1.00680 0.96391 0.86357 1.22109 0.98991 0.83271 1.03221 1.62160 1.07155 1.50125 1.02171 1.19972 0.96190 0.91817 0.86365 1.21698 1.36028 0.96984 1.02902 0.92509 1.24917 0.95087 0.98194 0.95523 1.69946 1.40129 1.36136 1.06616 0.86649 0.78549 0.85446 0.78062 1.19885 1.21049 1.20987 1.22062 0.87926 1.02638 0.93414 1.22940 1.01621 0.92903 1.04694 1.23651 1.01304 0.95371 1.03181 0.89976 0.92465 0.92113 0.92596 0.91258 0.92586 0.92817 0.91363 0.89531 0.94727 0.94179 0.92840 0.89299 0.90536 0.89481 0.85355 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.35 37.16 0.31 -2.11 16 2 C 0.08 1.50 1.34 -68.86 -0.09 1.40 16 3 H 0.07 1.48 5.92 -51.93 -0.31 1.18 16 4 C 0.51 9.54 6.14 -10.98 -0.07 9.47 16 5 O -0.52 -11.29 14.62 5.55 0.08 -11.21 16 6 N -0.63 -9.10 3.27 -189.52 -0.62 -9.72 16 7 C 0.09 1.10 10.17 59.84 0.61 1.71 16 8 C 0.07 0.75 9.79 59.85 0.59 1.34 16 9 N -0.49 -11.05 4.56 -221.53 -1.01 -12.06 16 10 C 0.18 4.50 4.24 -4.98 -0.02 4.48 16 11 C -0.54 -13.79 5.82 -34.44 -0.20 -13.99 16 12 H 0.06 1.47 6.33 -52.48 -0.33 1.14 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 15 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.05 1.08 4.42 -67.71 -0.30 0.78 16 20 C -0.18 -3.75 10.28 -26.73 -0.27 -4.02 16 21 C -0.20 -4.25 8.62 -26.73 -0.23 -4.49 16 22 H 0.08 1.54 6.81 -51.93 -0.35 1.18 16 23 H 0.06 0.79 5.39 -51.93 -0.28 0.51 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.07 0.58 7.72 -51.93 -0.40 0.18 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 30 H 0.09 1.01 4.31 -51.93 -0.22 0.78 16 31 H 0.03 0.90 6.54 -51.93 -0.34 0.56 16 32 H 0.04 1.09 6.56 -51.93 -0.34 0.75 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.09 1.97 6.39 -51.93 -0.33 1.64 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.13 3.16 5.03 -51.93 -0.26 2.90 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -30.16 295.35 -6.83 -36.99 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.67 Total: 4.04 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.22 Total: -3.78 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.89 Total: -46.05 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.16 -6.83 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.222 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds