Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50701 * 109.46787 * 240.00380 * 2 1 3 5 5 O 1.21287 * 119.99430 * 247.47383 * 4 2 1 6 6 N 1.34777 * 120.00558 * 67.47616 * 4 2 1 7 7 C 1.46494 * 120.00179 * 185.89739 * 6 4 2 8 8 C 1.46498 * 119.99525 * 5.89204 * 6 4 2 9 9 N 1.46898 * 109.47308 * 120.00115 * 2 1 3 10 10 C 1.46897 * 111.00134 * 300.00316 * 9 2 1 11 11 C 1.50700 * 109.46926 * 301.50547 * 10 9 2 12 12 H 1.08004 * 119.99791 * 3.46691 * 11 10 9 13 13 C 1.37876 * 120.00157 * 183.46813 * 11 10 9 14 14 N 1.31511 * 120.00194 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99959 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47409 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47161 * 120.00028 * 15 13 11 18 18 H 1.48496 * 109.47439 * 240.00131 * 15 13 11 19 19 C 1.46896 * 110.99957 * 176.04293 * 9 2 1 20 20 C 1.53004 * 117.49810 * 198.02752 * 19 9 2 21 21 C 1.52994 * 60.00156 * 252.51455 * 20 19 9 22 22 H 1.09000 * 109.46792 * 306.62671 * 1 2 3 23 23 H 1.09000 * 109.46973 * 66.62623 * 1 2 3 24 24 H 1.08997 * 109.47145 * 186.62650 * 1 2 3 25 25 H 1.09010 * 109.47246 * 60.00027 * 7 6 4 26 26 H 1.08994 * 109.47356 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47042 * 299.99838 * 7 6 4 28 28 H 1.09007 * 109.47026 * 84.53329 * 8 6 4 29 29 H 1.08997 * 109.47172 * 204.52807 * 8 6 4 30 30 H 1.09000 * 109.47788 * 324.53033 * 8 6 4 31 31 H 1.09001 * 109.47402 * 61.50186 * 10 9 2 32 32 H 1.08998 * 109.47235 * 181.50802 * 10 9 2 33 33 H 0.96999 * 119.99960 * 180.02562 * 14 13 11 34 34 H 1.08996 * 115.56531 * 343.72226 * 19 9 2 35 35 H 1.08997 * 117.49712 * 145.02164 * 20 19 9 36 36 H 1.08997 * 117.49949 * 0.02562 * 20 19 9 37 37 H 1.09000 * 117.49787 * 107.49145 * 21 20 19 38 38 H 1.08999 * 117.50335 * 252.51054 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6138 -1.7694 -1.1244 6 7 1.8354 -0.1688 -2.4489 7 6 2.2070 -0.9175 -3.6520 8 6 1.2496 1.1685 -2.5701 9 7 2.0198 -0.6925 1.1994 10 6 1.5487 -0.0265 2.4210 11 6 2.0202 1.4049 2.4265 12 1 2.5626 1.7979 1.5793 13 6 1.7591 2.2126 3.5129 14 7 1.0991 1.7338 4.5448 15 14 2.3442 3.9866 3.5199 16 1 3.0580 4.2775 2.2506 17 1 1.1748 4.8930 3.6485 18 1 3.2642 4.2000 4.6658 19 6 3.4851 -0.7946 1.1869 20 6 4.1292 -1.8286 2.1126 21 6 4.2357 -0.3378 2.4395 22 1 -0.3633 0.6131 0.8248 23 1 -0.3633 0.4077 -0.9433 24 1 -0.3633 -1.0208 0.1186 25 1 1.6472 -1.8523 -3.6857 26 1 1.9749 -0.3234 -4.5359 27 1 3.2750 -1.1342 -3.6297 28 1 2.0338 1.9190 -2.4703 29 1 0.7723 1.2691 -3.5448 30 1 0.5070 1.3124 -1.7853 31 1 0.4594 -0.0503 2.4509 32 1 1.9476 -0.5437 3.2937 33 1 0.9151 2.3022 5.3089 34 1 3.9608 -0.6171 0.2224 35 1 5.0285 -2.3315 1.7571 36 1 3.4655 -2.4334 2.7306 37 1 3.6422 0.0385 3.2727 38 1 5.2052 0.1403 2.2989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = -2.305347 kcal Electronic energy + Delta-G solvation = -18539.631261 eV Core-core repulsion = 15804.310035 eV Total energy + Delta-G solvation = -2735.321225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30460 -39.17864 -36.52379 -35.60190 -34.55051 -31.29417 -28.77785 -28.50900 -27.28679 -25.33100 -23.16137 -22.94016 -21.19719 -20.00054 -18.53377 -17.83791 -17.77706 -16.67293 -16.54669 -16.34293 -15.56548 -15.15737 -14.67450 -14.31290 -13.99025 -13.78287 -13.61113 -13.48051 -13.35290 -13.00855 -12.91320 -12.81309 -12.56186 -12.46839 -12.17503 -11.91862 -11.82975 -11.66239 -11.09480 -11.03061 -10.53436 -10.49693 -9.60778 -8.82307 -8.07020 -6.23845 1.39218 1.42763 1.52113 1.66223 2.07792 2.42187 3.04461 3.17060 3.45033 3.64968 4.18154 4.21255 4.29683 4.32129 4.34282 4.43892 4.50656 4.52018 4.62933 4.76590 4.83657 4.89032 4.92115 4.99300 5.11233 5.21393 5.32216 5.34563 5.44106 5.58739 5.62666 5.81274 6.07962 6.24773 6.35766 6.55706 6.91636 7.25578 7.44238 8.94584 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.008711 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.887638 B = 3213.493837 C = 3774.575553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 H 0.066 0.934 4 C 0.513 3.487 5 O -0.560 6.560 6 N -0.624 5.624 7 C 0.090 3.910 8 C 0.060 3.940 9 N -0.504 5.504 10 C 0.201 3.799 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.017 3.983 14 N -0.926 5.926 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.286 1.286 19 C 0.041 3.959 20 C -0.171 4.171 21 C -0.197 4.197 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.017 0.983 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 0.658 -14.766 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.037 4.037 3 H 0.083 0.917 4 C 0.301 3.699 5 O -0.438 6.438 6 N -0.358 5.358 7 C -0.052 4.052 8 C -0.082 4.082 9 N -0.226 5.226 10 C 0.075 3.925 11 C -0.567 4.567 12 H 0.074 0.926 13 C -0.182 4.182 14 N -0.566 5.566 15 Si 0.774 3.226 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.212 1.212 19 C -0.068 4.068 20 C -0.209 4.209 21 C -0.235 4.235 22 H 0.080 0.920 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.310 -0.334 -14.590 14.597 hybrid contribution 0.602 1.590 0.649 1.820 sum 0.912 1.257 -13.941 14.028 Atomic orbital electron populations 1.21839 0.91450 1.02335 1.03373 1.21438 0.97767 0.96236 0.88262 0.91675 1.20883 0.78517 0.85228 0.85300 1.90639 1.42135 1.24252 1.86759 1.47873 1.63188 1.19187 1.05560 1.21726 1.00082 0.96913 0.86493 1.22350 0.99109 0.81436 1.05293 1.62089 1.07725 1.50418 1.02408 1.19584 0.94755 0.91511 0.86667 1.21765 1.35185 0.97169 1.02596 0.92580 1.25646 0.95284 1.02093 0.95198 1.70065 1.41583 1.37644 1.07331 0.85649 0.78064 0.80738 0.78106 1.18930 1.20519 1.21211 1.22119 0.87638 1.03659 0.93407 1.22977 1.02131 0.92197 1.03577 1.23467 1.01612 0.96559 1.01907 0.92013 0.88627 0.92925 0.92972 0.87005 0.93516 0.92301 0.87376 0.90154 0.96535 0.97260 0.92820 0.89200 0.87895 0.90480 0.88613 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.35 71.98 0.60 -3.89 16 2 C 0.07 2.89 1.34 44.17 0.06 2.95 16 3 H 0.07 2.62 5.92 -2.39 -0.01 2.60 16 4 C 0.51 18.48 6.14 87.66 0.54 19.02 16 5 O -0.56 -24.08 14.62 -3.05 -0.04 -24.13 16 6 N -0.62 -16.32 3.27 -871.89 -2.85 -19.17 16 7 C 0.09 1.85 10.17 127.77 1.30 3.15 16 8 C 0.06 1.12 9.79 127.77 1.25 2.37 16 9 N -0.50 -22.98 4.56 -854.79 -3.90 -26.88 16 10 C 0.20 10.30 4.24 85.56 0.36 10.67 16 11 C -0.53 -27.47 5.82 25.60 0.15 -27.32 16 12 H 0.06 2.89 6.33 -2.91 -0.02 2.87 16 13 C 0.02 0.91 5.46 84.65 0.46 1.37 16 14 N -0.93 -53.17 13.29 21.45 0.28 -52.89 16 15 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 C 0.04 1.82 4.42 44.92 0.20 2.02 16 20 C -0.17 -6.94 10.28 30.59 0.31 -6.63 16 21 C -0.20 -8.55 8.62 30.59 0.26 -8.29 16 22 H 0.06 2.34 6.81 -2.39 -0.02 2.32 16 23 H 0.10 2.44 5.39 -2.39 -0.01 2.43 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.11 1.34 7.72 -2.39 -0.02 1.33 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.11 1.21 7.81 -2.39 -0.02 1.19 16 30 H 0.08 1.61 4.31 -2.39 -0.01 1.60 16 31 H 0.02 0.90 6.54 -2.39 -0.02 0.89 16 32 H 0.01 0.53 6.56 -2.39 -0.02 0.52 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.09 3.94 6.39 -2.39 -0.02 3.93 16 35 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.10 4.86 5.03 -2.39 -0.01 4.85 16 38 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -66.16 295.35 2.06 -64.09 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.05 Total: 19.35 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.50 Total: -4.59 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -6.46 Total: -98.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -66.16 2.06 -64.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.788 kcal (2) G-P(sol) polarization free energy of solvation -66.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds