Wall clock time and date at job start Mon Mar 30 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47384 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00210 * 3 2 1 5 5 C 1.34783 * 119.99708 * 89.99994 * 3 2 1 6 6 O 1.21281 * 120.00230 * 359.97438 * 5 3 2 7 7 C 1.50700 * 119.99534 * 180.02562 * 5 3 2 8 8 N 1.46905 * 109.46764 * 180.02562 * 7 5 3 9 9 C 1.46898 * 111.00037 * 170.00220 * 8 7 5 10 10 C 1.50702 * 109.46682 * 289.13189 * 9 8 7 11 11 H 1.07998 * 120.00169 * 3.43277 * 10 9 8 12 12 C 1.37882 * 119.99820 * 183.42943 * 10 9 8 13 13 N 1.31517 * 119.99718 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99915 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47017 * 90.00044 * 14 12 10 16 16 H 1.48505 * 109.47157 * 209.99820 * 14 12 10 17 17 H 1.48499 * 109.47249 * 329.99978 * 14 12 10 18 18 C 1.46906 * 110.99807 * 293.95131 * 8 7 5 19 19 C 1.52997 * 117.49861 * 245.37769 * 18 8 7 20 20 C 1.52998 * 117.49915 * 176.75285 * 18 8 7 21 21 H 1.08999 * 109.46861 * 59.99703 * 1 2 3 22 22 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46766 * 299.99926 * 1 2 3 24 24 H 1.08998 * 109.47501 * 239.99974 * 2 1 3 25 25 H 1.08999 * 109.46861 * 120.00297 * 2 1 3 26 26 H 1.08998 * 109.46921 * 269.99778 * 4 3 2 27 27 H 1.09002 * 109.46788 * 29.99483 * 4 3 2 28 28 H 1.08994 * 109.47419 * 149.99940 * 4 3 2 29 29 H 1.08990 * 109.47378 * 60.00045 * 7 5 3 30 30 H 1.08994 * 109.46981 * 299.99674 * 7 5 3 31 31 H 1.09003 * 109.47146 * 49.12867 * 9 8 7 32 32 H 1.08997 * 109.47400 * 169.13352 * 9 8 7 33 33 H 0.97002 * 119.99872 * 180.02562 * 13 12 10 34 34 H 1.08999 * 115.55017 * 31.08199 * 18 8 7 35 35 H 1.09003 * 117.49966 * 359.97438 * 19 18 8 36 36 H 1.08993 * 117.49998 * 145.02270 * 19 18 8 37 37 H 1.08993 * 117.50298 * 214.98231 * 20 18 8 38 38 H 1.09002 * 117.49879 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0165 1.1673 6 8 2.0405 1.4449 2.2176 7 6 2.7449 3.4375 1.1672 8 7 2.9089 3.8989 2.5523 9 6 3.6159 5.1857 2.5983 10 6 5.0614 4.9782 2.2262 11 1 5.4067 3.9998 1.9264 12 6 5.9430 6.0374 2.2683 13 7 7.2044 5.8564 1.9430 14 14 5.3458 7.7295 2.7873 15 1 5.4879 7.8749 4.2583 16 1 6.1564 8.7710 2.1063 17 1 3.9184 7.8880 2.4098 18 6 1.6110 3.9866 3.2350 19 6 1.1278 5.3752 3.6580 20 6 1.6157 4.3807 4.7134 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.2920 1.9005 -1.5833 27 1 1.5818 1.6877 -2.0283 28 1 2.0957 3.1410 -1.1383 29 1 2.0267 4.0765 0.6537 30 1 3.7050 3.4837 0.6533 31 1 3.1553 5.8787 1.8942 32 1 3.5556 5.5976 3.6057 33 1 7.8247 6.6015 1.9730 34 1 0.8582 3.2695 2.9077 35 1 1.7730 6.2237 3.4301 36 1 0.0569 5.5720 3.6090 37 1 0.8659 3.9231 5.3586 38 1 2.5818 4.5745 5.1795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:16 Heat of formation + Delta-G solvation = 8.815485 kcal Electronic energy + Delta-G solvation = -17950.361067 eV Core-core repulsion = 15215.522077 eV Total energy + Delta-G solvation = -2734.838990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73227 -37.85280 -35.48830 -33.64385 -32.31224 -31.21517 -28.36243 -26.57617 -25.74135 -22.85950 -22.35729 -21.69964 -19.47729 -18.53421 -17.14190 -16.74239 -16.13717 -15.45112 -15.17164 -14.53238 -14.16006 -13.80307 -13.49331 -13.01959 -12.75030 -12.60963 -12.57143 -12.30106 -12.13244 -11.90936 -11.61050 -11.39171 -11.03350 -11.01404 -10.75206 -10.51978 -10.24710 -9.82865 -9.81039 -9.26648 -9.17043 -8.59513 -8.50165 -7.22705 -6.08383 -4.06216 3.05448 3.16647 3.26711 3.34019 3.35080 4.35278 4.39060 4.68430 4.84307 5.12461 5.19965 5.20872 5.24459 5.38313 5.45981 5.49585 5.54734 5.63451 5.67815 5.76023 5.91084 5.96190 6.04491 6.10281 6.15103 6.24284 6.47084 6.67388 6.69262 6.77169 6.89466 7.50190 7.58488 7.86616 7.98385 8.58198 8.62829 8.99915 9.52860 11.04600 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.007205 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.331379 B = 3885.412428 C = 4595.125944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.112 3.888 3 N -0.628 5.628 4 C 0.079 3.921 5 C 0.515 3.485 6 O -0.521 6.521 7 C 0.049 3.951 8 N -0.480 5.480 9 C 0.161 3.839 10 C -0.512 4.512 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.872 3.128 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.039 3.961 19 C -0.235 4.235 20 C -0.171 4.171 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.118 0.882 31 H -0.007 1.007 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 -6.080 -6.016 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.364 5.364 4 C -0.065 4.065 5 C 0.303 3.697 6 O -0.395 6.395 7 C -0.082 4.082 8 N -0.201 5.201 9 C 0.035 3.965 10 C -0.551 4.551 11 H 0.098 0.902 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.072 4.072 19 C -0.274 4.274 20 C -0.209 4.209 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.010 0.990 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.883 -6.640 -5.223 15.406 hybrid contribution -0.630 1.595 -0.235 1.731 sum -13.513 -5.045 -5.458 15.423 Atomic orbital electron populations 1.22122 0.96366 1.01791 1.02127 1.21326 0.93985 0.82883 1.02869 1.47966 1.67694 1.14207 1.06548 1.21785 1.01343 0.98026 0.85320 1.21005 0.76587 0.89202 0.82863 1.90654 1.50461 1.67652 1.30764 1.21930 1.02586 0.91060 0.92655 1.61477 1.15296 1.31133 1.12194 1.20304 0.94732 0.85026 0.96391 1.21030 0.90907 0.97789 1.45329 0.90173 1.24873 0.94705 0.98594 0.94924 1.69893 1.03113 1.31872 1.48792 0.86908 0.79174 0.84644 0.79332 1.20032 1.21125 1.19228 1.22602 0.92762 0.95153 0.96633 1.23623 1.00674 0.95965 1.07156 1.22942 1.02570 1.03007 0.92377 0.92868 0.91938 0.92299 0.91006 0.89966 0.92315 0.91514 0.90766 0.92997 0.86456 0.98957 0.94896 0.92604 0.87235 0.88303 0.89849 0.89360 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.11 1.32 6.13 -4.04 -0.02 1.29 16 3 N -0.63 -8.67 2.87 -181.57 -0.52 -9.20 16 4 C 0.08 0.83 10.24 59.84 0.61 1.44 16 5 C 0.51 9.23 7.20 -10.98 -0.08 9.15 16 6 O -0.52 -10.97 14.37 5.56 0.08 -10.89 16 7 C 0.05 0.92 3.84 -4.97 -0.02 0.90 16 8 N -0.48 -10.57 4.41 -229.52 -1.01 -11.58 16 9 C 0.16 3.89 2.41 -4.98 -0.01 3.88 16 10 C -0.51 -14.41 9.05 -34.44 -0.31 -14.72 16 11 H 0.08 2.47 7.63 -52.49 -0.40 2.07 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 14 Si 0.87 21.21 27.40 -169.99 -4.66 16.56 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.22 6.64 56.52 0.38 -5.84 16 18 C 0.04 0.75 5.26 -67.71 -0.36 0.39 16 19 C -0.23 -4.11 9.55 -26.73 -0.26 -4.36 16 20 C -0.17 -3.09 9.93 -26.73 -0.27 -3.35 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 25 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 29 H 0.05 0.88 7.38 -51.93 -0.38 0.49 16 30 H 0.12 2.36 6.91 -51.93 -0.36 2.00 16 31 H -0.01 -0.17 7.05 -51.93 -0.37 -0.54 16 32 H 0.03 0.81 5.11 -51.93 -0.27 0.55 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.11 2.07 6.63 -51.93 -0.34 1.73 16 35 H 0.10 1.88 5.98 -51.93 -0.31 1.57 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.10 1.90 7.51 -51.93 -0.39 1.51 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -32.50 304.54 -7.25 -39.76 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.07 Total: 1.95 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.43 Total: -4.78 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.76 Total: -47.18 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.66 Total: 16.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.50 -7.25 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.571 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds