Wall clock time and date at job start Mon Mar 30 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47384 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00210 * 3 2 1 5 5 C 1.34783 * 119.99708 * 89.99994 * 3 2 1 6 6 O 1.21281 * 120.00230 * 359.97438 * 5 3 2 7 7 C 1.50700 * 119.99534 * 180.02562 * 5 3 2 8 8 N 1.46905 * 109.46764 * 180.02562 * 7 5 3 9 9 C 1.46898 * 111.00037 * 170.00220 * 8 7 5 10 10 C 1.50702 * 109.46682 * 289.13189 * 9 8 7 11 11 H 1.07998 * 120.00169 * 3.43277 * 10 9 8 12 12 C 1.37882 * 119.99820 * 183.42943 * 10 9 8 13 13 N 1.31517 * 119.99718 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99915 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47017 * 90.00044 * 14 12 10 16 16 H 1.48505 * 109.47157 * 209.99820 * 14 12 10 17 17 H 1.48499 * 109.47249 * 329.99978 * 14 12 10 18 18 C 1.46906 * 110.99807 * 293.95131 * 8 7 5 19 19 C 1.52997 * 117.49861 * 245.37769 * 18 8 7 20 20 C 1.52998 * 117.49915 * 176.75285 * 18 8 7 21 21 H 1.08999 * 109.46861 * 59.99703 * 1 2 3 22 22 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46766 * 299.99926 * 1 2 3 24 24 H 1.08998 * 109.47501 * 239.99974 * 2 1 3 25 25 H 1.08999 * 109.46861 * 120.00297 * 2 1 3 26 26 H 1.08998 * 109.46921 * 269.99778 * 4 3 2 27 27 H 1.09002 * 109.46788 * 29.99483 * 4 3 2 28 28 H 1.08994 * 109.47419 * 149.99940 * 4 3 2 29 29 H 1.08990 * 109.47378 * 60.00045 * 7 5 3 30 30 H 1.08994 * 109.46981 * 299.99674 * 7 5 3 31 31 H 1.09003 * 109.47146 * 49.12867 * 9 8 7 32 32 H 1.08997 * 109.47400 * 169.13352 * 9 8 7 33 33 H 0.97002 * 119.99872 * 180.02562 * 13 12 10 34 34 H 1.08999 * 115.55017 * 31.08199 * 18 8 7 35 35 H 1.09003 * 117.49966 * 359.97438 * 19 18 8 36 36 H 1.08993 * 117.49998 * 145.02270 * 19 18 8 37 37 H 1.08993 * 117.50298 * 214.98231 * 20 18 8 38 38 H 1.09002 * 117.49879 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0165 1.1673 6 8 2.0405 1.4449 2.2176 7 6 2.7449 3.4375 1.1672 8 7 2.9089 3.8989 2.5523 9 6 3.6159 5.1857 2.5983 10 6 5.0614 4.9782 2.2262 11 1 5.4067 3.9998 1.9264 12 6 5.9430 6.0374 2.2683 13 7 7.2044 5.8564 1.9430 14 14 5.3458 7.7295 2.7873 15 1 5.4879 7.8749 4.2583 16 1 6.1564 8.7710 2.1063 17 1 3.9184 7.8880 2.4098 18 6 1.6110 3.9866 3.2350 19 6 1.1278 5.3752 3.6580 20 6 1.6157 4.3807 4.7134 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.2920 1.9005 -1.5833 27 1 1.5818 1.6877 -2.0283 28 1 2.0957 3.1410 -1.1383 29 1 2.0267 4.0765 0.6537 30 1 3.7050 3.4837 0.6533 31 1 3.1553 5.8787 1.8942 32 1 3.5556 5.5976 3.6057 33 1 7.8247 6.6015 1.9730 34 1 0.8582 3.2695 2.9077 35 1 1.7730 6.2237 3.4301 36 1 0.0569 5.5720 3.6090 37 1 0.8659 3.9231 5.3586 38 1 2.5818 4.5745 5.1795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:16 Heat of formation + Delta-G solvation = -13.879071 kcal Electronic energy + Delta-G solvation = -17951.345177 eV Core-core repulsion = 15215.522077 eV Total energy + Delta-G solvation = -2735.823100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10455 -39.33693 -36.72229 -35.39920 -34.23159 -32.30579 -30.18722 -27.72135 -27.18227 -24.31482 -23.81484 -23.16257 -20.97471 -19.94880 -19.13854 -18.08878 -17.46343 -16.92885 -16.54949 -16.18047 -15.83504 -15.11004 -14.73554 -14.60713 -14.33370 -13.94934 -13.85428 -13.54116 -13.34484 -13.11914 -13.00558 -12.80819 -12.68030 -12.37114 -12.35488 -11.95471 -11.92501 -11.67266 -11.30985 -11.20046 -10.79554 -10.63399 -9.63352 -8.84461 -8.28961 -6.32896 1.35187 1.36144 1.46495 1.66353 2.01977 2.33687 2.88917 3.03997 3.21889 3.63158 4.01111 4.11320 4.13386 4.20457 4.28461 4.32814 4.42036 4.46526 4.55675 4.72427 4.74577 4.75451 4.82790 4.86194 4.95379 5.01354 5.03602 5.11596 5.27279 5.30209 5.51822 5.65827 5.95410 6.19401 6.45150 6.60513 6.72481 7.25657 7.30662 8.87593 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.007205 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.331379 B = 3885.412428 C = 4595.125944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.106 3.894 3 N -0.620 5.620 4 C 0.071 3.929 5 C 0.513 3.487 6 O -0.561 6.561 7 C 0.052 3.948 8 N -0.508 5.508 9 C 0.177 3.823 10 C -0.519 4.519 11 H 0.035 0.965 12 C 0.014 3.986 13 N -0.945 5.945 14 Si 0.943 3.057 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.246 1.246 18 C 0.023 3.977 19 C -0.214 4.214 20 C -0.174 4.174 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.000 1.000 32 H 0.031 0.969 33 H 0.268 0.732 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 -5.282 -6.824 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.015 4.015 3 N -0.355 5.355 4 C -0.071 4.071 5 C 0.301 3.699 6 O -0.440 6.440 7 C -0.079 4.079 8 N -0.230 5.230 9 C 0.051 3.949 10 C -0.557 4.557 11 H 0.053 0.947 12 C -0.184 4.184 13 N -0.585 5.585 14 Si 0.766 3.234 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.169 1.169 18 C -0.087 4.087 19 C -0.253 4.253 20 C -0.212 4.212 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.051 0.949 24 H 0.123 0.877 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.018 0.982 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.362 -5.866 -6.079 17.532 hybrid contribution 0.166 1.205 -0.061 1.217 sum -15.196 -4.661 -6.140 17.040 Atomic orbital electron populations 1.22046 0.94823 1.03033 1.01621 1.21549 0.95227 0.81514 1.03258 1.48041 1.66048 1.14967 1.06410 1.22039 1.02516 0.98064 0.84436 1.20815 0.76646 0.88795 0.83615 1.90626 1.52644 1.68268 1.32425 1.21863 1.02153 0.92562 0.91300 1.61311 1.17427 1.30006 1.14259 1.19994 0.92487 0.86413 0.96004 1.21220 0.93402 0.96008 1.45102 0.94697 1.25782 0.94629 1.03204 0.94802 1.70045 1.04683 1.33478 1.50327 0.85784 0.79764 0.78858 0.79003 1.19491 1.20422 1.16942 1.22608 0.91741 0.96970 0.97345 1.23618 1.02253 0.94131 1.05286 1.23021 1.02475 1.03488 0.92167 0.91164 0.89889 0.94866 0.87728 0.92448 0.92126 0.87913 0.90753 0.90661 0.88593 0.98231 0.95080 0.92341 0.86819 0.89633 0.86567 0.86752 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.24 71.98 0.74 -2.15 16 2 C 0.11 2.33 6.13 86.38 0.53 2.86 16 3 N -0.62 -16.48 2.87 -846.76 -2.43 -18.91 16 4 C 0.07 1.35 10.24 127.77 1.31 2.66 16 5 C 0.51 18.52 7.20 87.66 0.63 19.15 16 6 O -0.56 -24.19 14.37 -3.03 -0.04 -24.23 16 7 C 0.05 1.99 3.84 85.56 0.33 2.32 16 8 N -0.51 -22.62 4.41 -880.07 -3.88 -26.50 16 9 C 0.18 8.57 2.41 85.56 0.21 8.78 16 10 C -0.52 -30.11 9.05 25.60 0.23 -29.88 16 11 H 0.03 2.28 7.63 -2.91 -0.02 2.26 16 12 C 0.01 0.79 5.47 84.66 0.46 1.25 16 13 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 14 Si 0.94 43.51 27.40 68.60 1.88 45.39 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.25 -10.41 6.64 99.48 0.66 -9.75 16 18 C 0.02 0.86 5.26 44.91 0.24 1.10 16 19 C -0.21 -6.92 9.55 30.59 0.29 -6.63 16 20 C -0.17 -6.01 9.93 30.59 0.30 -5.71 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 25 H 0.06 1.56 7.42 -2.39 -0.02 1.54 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 28 H 0.07 1.42 6.44 -2.39 -0.02 1.40 16 29 H 0.08 2.47 7.38 -2.39 -0.02 2.45 16 30 H 0.10 4.03 6.91 -2.39 -0.02 4.01 16 31 H 0.00 0.00 7.05 -2.39 -0.02 -0.01 16 32 H 0.03 1.51 5.11 -2.39 -0.01 1.50 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.11 4.20 6.63 -2.39 -0.02 4.18 16 35 H 0.09 3.03 5.98 -2.39 -0.01 3.02 16 36 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.08 2.98 7.51 -2.39 -0.02 2.96 16 Total: -1.00 -72.84 304.54 2.07 -70.77 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.98 Total: 18.18 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.27 Total: -6.24 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.02 Total: -103.86 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.04 Total: -24.23 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -72.84 2.07 -70.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.895 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds