Wall clock time and date at job start Mon Mar 30 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47211 * 2 1 4 4 C 1.52998 * 109.47364 * 119.99287 * 2 1 3 5 5 N 1.46495 * 109.47011 * 65.79118 * 4 2 1 6 6 C 1.34776 * 120.00263 * 184.97444 * 5 4 2 7 7 O 1.21691 * 120.00226 * 359.97438 * 6 5 4 8 8 C 1.46380 * 120.00432 * 179.97438 * 6 5 4 9 9 H 1.07997 * 119.99552 * 359.97438 * 8 6 5 10 10 C 1.40050 * 120.00061 * 180.02562 * 8 6 5 11 11 N 1.30664 * 120.00061 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99625 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47202 * 89.99636 * 12 10 8 14 14 H 1.48497 * 109.46710 * 209.99626 * 12 10 8 15 15 H 1.48495 * 109.47380 * 329.99527 * 12 10 8 16 16 N 1.46904 * 109.47498 * 239.99817 * 2 1 3 17 17 C 1.46838 * 110.99949 * 62.67079 * 16 2 1 18 18 C 1.53045 * 109.52316 * 185.84422 * 17 16 2 19 19 C 1.53111 * 109.27495 * 300.81858 * 18 17 16 20 20 C 1.53122 * 109.21330 * 57.62517 * 19 18 17 21 21 C 1.46845 * 111.00281 * 186.88259 * 16 2 1 22 22 H 1.08998 * 109.47419 * 300.00109 * 1 2 3 23 23 H 1.09003 * 109.47227 * 60.00742 * 1 2 3 24 24 H 1.09000 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47494 * 185.79044 * 4 2 1 26 26 H 1.08999 * 109.47383 * 305.79198 * 4 2 1 27 27 H 0.97008 * 120.00401 * 4.97308 * 5 4 2 28 28 H 0.97002 * 120.00361 * 180.02562 * 11 10 8 29 29 H 1.08992 * 109.46514 * 65.82657 * 17 16 2 30 30 H 1.09004 * 109.45138 * 305.84874 * 17 16 2 31 31 H 1.09002 * 109.50240 * 180.87634 * 18 17 16 32 32 H 1.09000 * 109.49908 * 60.75719 * 18 17 16 33 33 H 1.08999 * 109.52305 * 177.55379 * 19 18 17 34 34 H 1.09002 * 109.52590 * 297.68635 * 19 18 17 35 35 H 1.09001 * 109.50785 * 62.31697 * 20 19 18 36 36 H 1.09006 * 109.50346 * 182.43653 * 20 19 18 37 37 H 1.09002 * 109.46091 * 294.17587 * 21 16 2 38 38 H 1.09002 * 109.46413 * 54.14895 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6688 -2.1366 1.1818 6 6 1.9263 -2.9513 2.2241 7 8 2.4676 -2.5112 3.2212 8 6 1.5549 -4.3656 2.1570 9 1 1.0742 -4.7561 1.2723 10 6 1.8221 -5.2120 3.2403 11 7 2.4033 -4.7393 4.3109 12 14 1.3487 -7.0170 3.1542 13 1 2.4766 -7.7979 2.5858 14 1 1.0411 -7.5136 4.5194 15 1 0.1521 -7.1742 2.2890 16 7 2.0197 -0.6925 -1.1994 17 6 1.6018 0.0091 -2.4197 18 6 2.0024 -0.8144 -3.6459 19 6 3.5201 -1.0163 -3.6453 20 6 3.9364 -1.7047 -2.3424 21 6 3.4783 -0.8560 -1.1540 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.1251 -0.6322 1.3027 26 1 1.5945 -0.2706 2.1362 27 1 1.2376 -2.4877 0.3869 28 1 2.5887 -5.3255 5.0611 29 1 2.0874 0.9840 -2.4625 30 1 0.5200 0.1424 -2.4094 31 1 1.7059 -0.2859 -4.5519 32 1 1.5062 -1.7843 -3.6107 33 1 3.8051 -1.6390 -4.4933 34 1 4.0164 -0.0487 -3.7207 35 1 3.4716 -2.6890 -2.2862 36 1 5.0209 -1.8118 -2.3177 37 1 3.9552 0.1229 -1.2027 38 1 3.7596 -1.3511 -0.2245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045008392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:54 Heat of formation + Delta-G solvation = -48.511841 kcal Electronic energy + Delta-G solvation = -17994.779119 eV Core-core repulsion = 15257.454230 eV Total energy + Delta-G solvation = -2737.324889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31531 -37.05277 -34.98497 -32.56519 -31.79495 -30.81768 -29.61865 -26.86991 -25.20070 -23.85382 -22.52538 -20.33088 -19.82167 -18.98925 -17.12340 -16.30734 -15.30269 -14.82790 -14.62171 -14.26156 -13.91413 -13.69168 -13.64832 -13.27801 -13.09968 -12.75142 -12.17853 -12.00849 -11.57395 -11.38626 -11.16616 -11.08784 -11.00895 -10.84729 -10.76226 -10.56582 -10.33837 -10.16423 -10.12529 -9.93293 -8.76835 -8.09939 -7.49827 -7.29483 -6.09296 -4.53103 3.19411 3.26024 3.29744 3.98931 4.19105 4.69108 4.86013 4.90584 4.94556 5.13483 5.20304 5.34129 5.39731 5.53609 5.58587 5.64503 5.67449 5.75751 5.88687 5.92973 5.95493 6.05525 6.10339 6.12148 6.20843 6.29982 6.43286 6.49585 6.55998 6.60452 7.32091 7.34743 7.52655 8.11292 8.29126 8.47114 9.12421 9.73261 10.70849 10.91440 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.006200 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.170505 B = 4514.974672 C = 4903.563040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.041 0.959 4 C 0.139 3.861 5 N -0.754 5.754 6 C 0.554 3.446 7 O -0.587 6.587 8 C -0.543 4.543 9 H 0.066 0.934 10 C 0.088 3.912 11 N -0.771 5.771 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 N -0.526 5.526 17 C 0.053 3.947 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.116 4.116 21 C 0.052 3.948 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.388 0.612 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 7.673 -14.422 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 H 0.059 0.941 4 C 0.013 3.987 5 N -0.410 5.410 6 C 0.358 3.642 7 O -0.471 6.471 8 C -0.581 4.581 9 H 0.085 0.915 10 C -0.131 4.131 11 N -0.400 5.400 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.190 1.190 16 N -0.252 5.252 17 C -0.075 4.075 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.076 4.076 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.221 0.779 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.839 7.519 -13.494 15.470 hybrid contribution -0.011 -0.168 -0.413 0.446 sum -0.850 7.351 -13.907 15.753 Atomic orbital electron populations 1.21830 0.94112 1.03108 1.00837 1.21910 0.96079 0.95219 0.90472 0.94135 1.20910 0.98211 0.85182 0.94398 1.45952 1.67575 1.06923 1.20569 1.18208 0.78595 0.86388 0.81026 1.90588 1.47143 1.77113 1.32234 1.20886 1.42073 0.92626 1.02475 0.91549 1.25693 0.93130 0.99723 0.94581 1.70029 1.30772 1.35542 1.03662 0.86422 0.79490 0.83140 0.77958 1.19843 1.20582 1.18960 1.61842 1.12057 1.50110 1.01154 1.22123 1.00510 0.94675 0.90161 1.21570 0.96141 1.01029 0.96595 1.21574 0.96057 1.00200 0.97919 1.21571 1.00141 1.00038 0.93629 1.22165 0.87073 0.98179 1.00137 0.92287 0.93193 0.91136 0.93949 0.92845 0.77868 0.92304 0.95628 0.90606 0.92130 0.90962 0.92207 0.92777 0.90745 0.91897 0.95774 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.93 37.15 0.33 -1.60 16 2 C 0.07 1.07 2.34 -67.72 -0.16 0.91 16 3 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.14 2.72 4.53 -4.05 -0.02 2.70 16 5 N -0.75 -17.14 4.96 -61.72 -0.31 -17.44 16 6 C 0.55 16.05 7.75 -12.99 -0.10 15.95 16 7 O -0.59 -19.38 15.02 5.20 0.08 -19.31 16 8 C -0.54 -15.68 9.54 -35.63 -0.34 -16.01 16 9 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 10 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 11 N -0.77 -23.60 11.83 55.55 0.66 -22.94 16 12 Si 0.91 20.58 29.56 -169.99 -5.02 15.55 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 N -0.53 -7.48 3.86 -226.69 -0.88 -8.36 16 17 C 0.05 0.62 5.26 -3.83 -0.02 0.60 16 18 C -0.12 -1.22 6.10 -26.65 -0.16 -1.38 16 19 C -0.12 -1.28 6.00 -26.61 -0.16 -1.44 16 20 C -0.12 -1.48 6.10 -26.65 -0.16 -1.64 16 21 C 0.05 0.76 5.07 -3.83 -0.02 0.74 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.57 6.34 -51.93 -0.33 0.25 16 24 H 0.07 1.07 7.35 -51.93 -0.38 0.69 16 25 H 0.04 0.87 6.55 -51.92 -0.34 0.53 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.39 8.20 7.41 -40.82 -0.30 7.89 16 28 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.84 6.09 -51.93 -0.32 0.52 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 1.57 5.90 -51.93 -0.31 1.27 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -33.34 299.00 -8.04 -41.38 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.17 Total: 5.37 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.91 Total: 1.23 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.52 Total: -48.74 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.34 -8.04 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045008392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.129 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds