Wall clock time and date at job start Mon Mar 30 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47173 * 2 1 4 4 C 1.37186 * 120.00282 * 264.74814 * 3 2 1 5 5 H 1.07999 * 120.00090 * 141.74756 * 4 3 2 6 6 C 1.38876 * 119.99913 * 321.75199 * 4 3 2 7 7 N 1.31481 * 120.00218 * 338.43442 * 6 4 3 8 8 Si 1.86807 * 120.00178 * 158.43333 * 6 4 3 9 9 H 1.48494 * 109.46807 * 60.00084 * 8 6 4 10 10 H 1.48497 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47150 * 299.99827 * 8 6 4 12 12 C 1.34777 * 119.99806 * 84.74842 * 3 2 1 13 13 O 1.21582 * 119.99697 * 179.97438 * 12 3 2 14 14 N 1.34774 * 120.00058 * 0.02562 * 12 3 2 15 15 C 1.46500 * 119.99790 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47157 * 274.99468 * 15 14 12 17 17 C 1.53005 * 109.46957 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47142 * 60.00325 * 17 16 15 19 19 C 1.53005 * 109.46929 * 299.99692 * 18 17 16 20 20 C 1.53001 * 109.47229 * 60.00424 * 19 18 17 21 21 H 1.09006 * 109.46941 * 59.99392 * 1 2 3 22 22 H 1.08994 * 109.47068 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47158 * 300.00321 * 1 2 3 24 24 H 1.08992 * 109.46922 * 240.00119 * 2 1 3 25 25 H 1.09000 * 109.46997 * 119.99901 * 2 1 3 26 26 H 0.96994 * 120.00146 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00359 * 359.97438 * 14 12 3 28 28 H 1.08995 * 109.47543 * 35.00146 * 15 14 12 29 29 H 1.08995 * 109.47135 * 300.00288 * 16 15 14 30 30 H 1.08998 * 109.46771 * 60.00382 * 16 15 14 31 31 H 1.09003 * 109.47064 * 300.00139 * 17 16 15 32 32 H 1.09002 * 109.46750 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47083 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47266 * 59.99677 * 18 17 16 35 35 H 1.08995 * 109.47135 * 300.00065 * 19 18 17 36 36 H 1.08998 * 109.46771 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47334 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47116 * 59.99663 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3496 1.9917 -1.1830 5 1 2.1166 3.0351 -1.3360 6 6 2.9843 1.2680 -2.1840 7 7 3.6412 0.1690 -1.8850 8 14 2.9048 1.8558 -3.9554 9 1 3.5065 3.2097 -4.0551 10 1 3.6566 0.9143 -4.8235 11 1 1.4877 1.9102 -4.3958 12 6 2.1423 2.0521 1.1623 13 8 2.5480 3.1983 1.1623 14 7 1.8174 1.4522 2.3246 15 6 1.9526 2.1814 3.5881 16 6 3.3906 2.0588 4.0963 17 6 3.5316 2.8198 5.4162 18 6 2.5728 2.2279 6.4511 19 6 1.1348 2.3504 5.9429 20 6 0.9937 1.5894 4.6231 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.0849 -0.3363 -2.5840 27 1 1.4940 0.5376 2.3247 28 1 1.7119 3.2324 3.4287 29 1 3.6312 1.0078 4.2558 30 1 4.0737 2.4801 3.3588 31 1 3.2908 3.8709 5.2570 32 1 4.5561 2.7328 5.7780 33 1 2.6736 2.7697 7.3915 34 1 2.8136 1.1768 6.6102 35 1 0.8940 3.4015 5.7838 36 1 0.4518 1.9283 6.6800 37 1 -0.0308 1.6763 4.2613 38 1 1.2345 0.5383 4.7822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:29 Heat of formation + Delta-G solvation = -45.470816 kcal Electronic energy + Delta-G solvation = -18110.091685 eV Core-core repulsion = 15372.898665 eV Total energy + Delta-G solvation = -2737.193021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31584 -37.73234 -34.91669 -33.33461 -31.74538 -30.58212 -29.39480 -28.64801 -24.71185 -22.49616 -22.37682 -21.73929 -19.73091 -19.23475 -17.29763 -16.39632 -15.56350 -15.01256 -14.53719 -14.21553 -13.99958 -13.70777 -13.60143 -12.88859 -12.74355 -12.50632 -12.36378 -12.02871 -11.70383 -11.55540 -11.06185 -10.99049 -10.97623 -10.88517 -10.50493 -10.39371 -10.29516 -10.21659 -10.01207 -9.93701 -8.80871 -8.64255 -8.10050 -7.29042 -6.18517 -3.81307 3.28820 3.32610 3.35791 3.93938 4.40492 4.51072 4.85685 4.92059 5.06146 5.16846 5.34884 5.45207 5.46757 5.63351 5.68041 5.73098 5.77315 5.90442 5.96465 6.10975 6.20107 6.23638 6.25578 6.29189 6.33519 6.42133 6.50518 6.65090 6.72923 6.92511 7.27735 7.53206 7.69570 7.89935 8.54756 8.95016 9.39826 9.67275 10.32112 10.88470 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.006093 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.042033 B = 4594.342757 C = 4896.901729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.108 3.892 3 N -0.468 5.468 4 C -0.290 4.290 5 H 0.086 0.914 6 C 0.032 3.968 7 N -0.878 5.878 8 Si 0.917 3.083 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.669 3.331 13 O -0.618 6.618 14 N -0.758 5.758 15 C 0.169 3.831 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.126 4.126 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.105 0.895 25 H 0.040 0.960 26 H 0.264 0.736 27 H 0.386 0.614 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -1.880 12.206 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.192 5.192 4 C -0.418 4.418 5 H 0.104 0.896 6 C -0.171 4.171 7 N -0.516 5.516 8 Si 0.744 3.256 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.373 3.627 13 O -0.499 6.499 14 N -0.416 5.416 15 C 0.063 3.937 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.164 4.164 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.468 -1.191 12.039 12.896 hybrid contribution -0.075 -0.404 -0.891 0.981 sum -4.543 -1.595 11.148 12.143 Atomic orbital electron populations 1.22245 0.98527 1.00076 1.01602 1.21326 0.91372 0.85874 1.03062 1.42682 1.61097 1.11868 1.03531 1.19203 1.36447 0.97041 0.89145 0.89649 1.25338 0.94372 0.97036 1.00404 1.69998 1.30503 1.17894 1.33250 0.86154 0.78260 0.78618 0.82554 1.19905 1.21183 1.20105 1.16394 0.80301 0.85736 0.80299 1.90716 1.55252 1.17898 1.86061 1.45349 1.74378 1.16778 1.05084 1.20535 0.93670 0.97095 0.82442 1.21957 0.98187 1.00137 0.96587 1.21501 0.98845 0.99985 0.95104 1.21558 0.95076 1.00982 0.98070 1.21467 0.96695 1.00711 0.96331 1.21814 0.99601 0.99911 0.95070 0.92386 0.93318 0.93967 0.87753 0.94166 0.92592 0.77991 0.90234 0.92443 0.91142 0.91929 0.92257 0.92356 0.92145 0.91813 0.92069 0.91682 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.13 37.16 0.38 -2.66 16 2 C 0.11 2.40 5.33 -4.04 -0.02 2.38 16 3 N -0.47 -12.24 2.53 -120.18 -0.30 -12.55 16 4 C -0.29 -8.30 8.88 -14.92 -0.13 -8.43 16 5 H 0.09 2.56 7.79 -52.49 -0.41 2.15 16 6 C 0.03 0.86 4.89 -17.47 -0.09 0.78 16 7 N -0.88 -24.48 11.62 55.49 0.64 -23.84 16 8 Si 0.92 21.23 29.60 -169.99 -5.03 16.20 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.67 17.14 8.16 -86.92 -0.71 16.43 16 13 O -0.62 -18.09 15.88 5.29 0.08 -18.01 16 14 N -0.76 -15.03 4.94 -58.67 -0.29 -15.32 16 15 C 0.17 2.85 2.46 -67.92 -0.17 2.68 16 16 C -0.13 -2.09 5.50 -26.73 -0.15 -2.24 16 17 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 18 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 19 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 20 C -0.13 -1.60 5.39 -26.73 -0.14 -1.74 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.73 7.96 -51.93 -0.41 0.32 16 24 H 0.10 2.56 5.66 -51.93 -0.29 2.27 16 25 H 0.04 0.81 6.65 -51.93 -0.35 0.47 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 6.83 6.21 -40.82 -0.25 6.58 16 28 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.26 15.07 4.56 4.56 Total: -1.00 -31.86 302.26 -8.16 -40.02 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.32 Total: 6.20 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.51 Total: 2.74 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.05 Total: -51.71 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.08 Total: -18.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.86 -8.16 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.449 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds