Wall clock time and date at job start Mon Mar 30 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47173 * 2 1 4 4 C 1.37186 * 120.00282 * 264.74814 * 3 2 1 5 5 H 1.07999 * 120.00090 * 141.74756 * 4 3 2 6 6 C 1.38876 * 119.99913 * 321.75199 * 4 3 2 7 7 N 1.31481 * 120.00218 * 338.43442 * 6 4 3 8 8 Si 1.86807 * 120.00178 * 158.43333 * 6 4 3 9 9 H 1.48494 * 109.46807 * 60.00084 * 8 6 4 10 10 H 1.48497 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47150 * 299.99827 * 8 6 4 12 12 C 1.34777 * 119.99806 * 84.74842 * 3 2 1 13 13 O 1.21582 * 119.99697 * 179.97438 * 12 3 2 14 14 N 1.34774 * 120.00058 * 0.02562 * 12 3 2 15 15 C 1.46500 * 119.99790 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47157 * 274.99468 * 15 14 12 17 17 C 1.53005 * 109.46957 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47142 * 60.00325 * 17 16 15 19 19 C 1.53005 * 109.46929 * 299.99692 * 18 17 16 20 20 C 1.53001 * 109.47229 * 60.00424 * 19 18 17 21 21 H 1.09006 * 109.46941 * 59.99392 * 1 2 3 22 22 H 1.08994 * 109.47068 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47158 * 300.00321 * 1 2 3 24 24 H 1.08992 * 109.46922 * 240.00119 * 2 1 3 25 25 H 1.09000 * 109.46997 * 119.99901 * 2 1 3 26 26 H 0.96994 * 120.00146 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00359 * 359.97438 * 14 12 3 28 28 H 1.08995 * 109.47543 * 35.00146 * 15 14 12 29 29 H 1.08995 * 109.47135 * 300.00288 * 16 15 14 30 30 H 1.08998 * 109.46771 * 60.00382 * 16 15 14 31 31 H 1.09003 * 109.47064 * 300.00139 * 17 16 15 32 32 H 1.09002 * 109.46750 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47083 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47266 * 59.99677 * 18 17 16 35 35 H 1.08995 * 109.47135 * 300.00065 * 19 18 17 36 36 H 1.08998 * 109.46771 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47334 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47116 * 59.99663 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3496 1.9917 -1.1830 5 1 2.1166 3.0351 -1.3360 6 6 2.9843 1.2680 -2.1840 7 7 3.6412 0.1690 -1.8850 8 14 2.9048 1.8558 -3.9554 9 1 3.5065 3.2097 -4.0551 10 1 3.6566 0.9143 -4.8235 11 1 1.4877 1.9102 -4.3958 12 6 2.1423 2.0521 1.1623 13 8 2.5480 3.1983 1.1623 14 7 1.8174 1.4522 2.3246 15 6 1.9526 2.1814 3.5881 16 6 3.3906 2.0588 4.0963 17 6 3.5316 2.8198 5.4162 18 6 2.5728 2.2279 6.4511 19 6 1.1348 2.3504 5.9429 20 6 0.9937 1.5894 4.6231 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.0849 -0.3363 -2.5840 27 1 1.4940 0.5376 2.3247 28 1 1.7119 3.2324 3.4287 29 1 3.6312 1.0078 4.2558 30 1 4.0737 2.4801 3.3588 31 1 3.2908 3.8709 5.2570 32 1 4.5561 2.7328 5.7780 33 1 2.6736 2.7697 7.3915 34 1 2.8136 1.1768 6.6102 35 1 0.8940 3.4015 5.7838 36 1 0.4518 1.9283 6.6800 37 1 -0.0308 1.6763 4.2613 38 1 1.2345 0.5383 4.7822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:29 Heat of formation + Delta-G solvation = -65.431683 kcal Electronic energy + Delta-G solvation = -18110.957254 eV Core-core repulsion = 15372.898665 eV Total energy + Delta-G solvation = -2738.058589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04202 -39.12511 -36.87084 -35.00505 -33.69964 -31.64678 -31.16834 -30.03967 -26.71332 -24.08719 -23.52552 -23.11806 -21.16260 -20.79130 -19.12264 -18.35791 -17.19233 -16.79247 -16.01801 -15.89212 -15.33861 -15.08462 -14.98602 -14.66602 -14.38695 -13.77347 -13.75854 -13.50600 -13.21836 -13.06566 -12.82286 -12.68885 -12.34458 -12.15964 -12.10317 -12.03175 -11.82277 -11.49376 -11.31915 -11.12055 -10.85377 -10.70287 -9.86113 -9.29021 -8.28156 -5.98755 1.42059 1.43393 1.52963 2.18641 2.50148 2.56988 3.11406 3.62811 3.79335 3.89335 4.09520 4.27372 4.31323 4.36402 4.49139 4.59832 4.61447 4.63657 4.75695 4.77917 4.93894 4.97674 5.14654 5.16925 5.24181 5.26528 5.29692 5.36408 5.44928 5.49554 5.53381 5.56912 5.92894 6.06601 6.42669 6.96797 7.32520 7.71887 8.30279 8.77263 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.006093 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.042033 B = 4594.342757 C = 4896.901729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.481 5.481 4 C -0.324 4.324 5 H 0.057 0.943 6 C -0.002 4.002 7 N -0.897 5.897 8 Si 0.983 3.017 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.264 1.264 12 C 0.658 3.342 13 O -0.667 6.667 14 N -0.741 5.741 15 C 0.163 3.837 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.116 4.116 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.270 0.730 27 H 0.399 0.601 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -3.416 13.556 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.205 5.205 4 C -0.453 4.453 5 H 0.075 0.925 6 C -0.203 4.203 7 N -0.536 5.536 8 Si 0.807 3.193 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.188 1.188 12 C 0.361 3.639 13 O -0.553 6.553 14 N -0.399 5.399 15 C 0.058 3.942 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.154 4.154 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.235 0.765 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.608 -2.781 13.428 14.816 hybrid contribution 0.323 0.065 -1.282 1.324 sum -5.285 -2.716 12.146 13.522 Atomic orbital electron populations 1.22107 0.95348 1.02416 1.01226 1.21439 0.93908 0.83576 1.02704 1.42904 1.61334 1.13163 1.03109 1.19158 1.38455 0.96573 0.91138 0.92494 1.26104 0.93268 0.97003 1.03964 1.70069 1.30344 1.18524 1.34639 0.85167 0.78861 0.77872 0.77427 1.20489 1.19725 1.18832 1.16697 0.80251 0.85332 0.81601 1.90660 1.57438 1.20191 1.87010 1.45198 1.73024 1.17225 1.04420 1.20795 0.95548 0.95645 0.82245 1.21892 0.96485 1.00859 0.97234 1.21492 1.00537 0.99099 0.93966 1.21546 0.93976 1.01742 0.97844 1.21497 0.97514 1.00333 0.95631 1.21774 0.98294 1.00801 0.94500 0.94091 0.89501 0.93001 0.90086 0.92423 0.92048 0.76457 0.93304 0.91422 0.95974 0.92859 0.91161 0.90144 0.91021 0.92356 0.89183 0.91209 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.13 71.98 0.73 -4.62 16 2 C 0.11 4.73 5.33 86.38 0.46 5.19 16 3 N -0.48 -25.90 2.53 -652.41 -1.65 -27.55 16 4 C -0.32 -19.29 8.88 84.01 0.75 -18.54 16 5 H 0.06 3.63 7.79 -2.91 -0.02 3.60 16 6 C 0.00 -0.10 4.89 84.90 0.42 0.31 16 7 N -0.90 -50.42 11.62 21.65 0.25 -50.17 16 8 Si 0.98 43.95 29.60 68.60 2.03 45.98 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.66 35.00 8.16 179.05 1.46 36.46 16 13 O -0.67 -41.44 15.88 -3.98 -0.06 -41.50 16 14 N -0.74 -29.63 4.94 -457.80 -2.26 -31.89 16 15 C 0.16 5.52 2.46 45.00 0.11 5.63 16 16 C -0.13 -4.11 5.50 30.60 0.17 -3.94 16 17 C -0.11 -2.77 5.92 30.60 0.18 -2.59 16 18 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 19 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 20 C -0.12 -2.65 5.39 30.60 0.16 -2.49 16 21 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.05 1.70 7.96 -2.38 -0.02 1.68 16 24 H 0.08 3.98 5.66 -2.39 -0.01 3.97 16 25 H 0.06 2.27 6.65 -2.39 -0.02 2.26 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.40 13.67 6.21 -92.70 -0.58 13.09 16 28 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.86 302.26 3.56 -69.30 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.45 Total: 24.15 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.80 Total: 11.69 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.66 Total: -109.61 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.06 Total: -41.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.86 3.56 -69.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.872 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds