Wall clock time and date at job start Mon Mar 30 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46938 * 2 1 4 4 C 1.36932 * 119.99999 * 275.87728 * 3 2 1 5 5 H 1.08000 * 120.00197 * 320.24763 * 4 3 2 6 6 C 1.38819 * 119.99802 * 140.25199 * 4 3 2 7 7 N 1.31620 * 120.00051 * 152.83846 * 6 4 3 8 8 Si 1.86801 * 119.99685 * 332.55418 * 6 4 3 9 9 H 1.48507 * 109.46746 * 84.27970 * 8 6 4 10 10 H 1.48498 * 109.47298 * 204.27448 * 8 6 4 11 11 H 1.48495 * 109.47712 * 324.28114 * 8 6 4 12 12 C 1.46502 * 119.99985 * 95.88559 * 3 2 1 13 13 H 1.09002 * 109.47026 * 185.39141 * 12 3 2 14 14 C 1.53003 * 109.46873 * 305.39286 * 12 3 2 15 15 C 1.50703 * 109.47305 * 65.39055 * 12 3 2 16 16 O 1.21280 * 119.99892 * 339.42827 * 15 12 3 17 17 N 1.34775 * 119.99984 * 159.43093 * 15 12 3 18 18 C 1.47025 * 125.64839 * 4.35373 * 17 15 12 19 19 C 1.54314 * 107.27473 * 180.97063 * 18 17 15 20 20 C 1.55149 * 102.86542 * 22.52405 * 19 18 17 21 21 C 1.47420 * 125.64884 * 184.66192 * 17 15 12 22 22 H 1.09004 * 109.47397 * 303.89517 * 1 2 3 23 23 H 1.09006 * 109.46690 * 63.88777 * 1 2 3 24 24 H 1.08996 * 109.47562 * 183.88601 * 1 2 3 25 25 H 1.08996 * 109.47381 * 240.00151 * 2 1 3 26 26 H 1.08997 * 109.46882 * 119.99659 * 2 1 3 27 27 H 0.96997 * 119.99868 * 179.72323 * 7 6 4 28 28 H 1.08994 * 109.47468 * 65.61420 * 14 12 3 29 29 H 1.08999 * 109.47171 * 185.61744 * 14 12 3 30 30 H 1.08998 * 109.47090 * 305.61532 * 14 12 3 31 31 H 1.09003 * 109.87978 * 300.51296 * 18 17 15 32 32 H 1.08997 * 109.88037 * 61.68038 * 18 17 15 33 33 H 1.09000 * 110.92185 * 264.11263 * 19 18 17 34 34 H 1.08994 * 110.58912 * 140.78812 * 19 18 17 35 35 H 1.08997 * 111.01065 * 206.23024 * 20 19 18 36 36 H 1.09005 * 111.00560 * 82.37909 * 20 19 18 37 37 H 1.09000 * 110.37108 * 274.67209 * 21 17 15 38 38 H 1.09004 * 110.36522 * 36.88737 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1320 2.0672 -1.1796 5 1 2.4955 1.5646 -2.0637 6 6 1.7801 3.4088 -1.2391 7 7 2.3462 4.1990 -2.1265 8 14 0.4973 4.0907 -0.0649 9 1 1.1453 4.4487 1.2225 10 1 -0.1244 5.3012 -0.6595 11 1 -0.5487 3.0646 0.1760 12 6 2.3851 2.0285 1.2621 13 1 2.6313 3.0739 1.0761 14 6 1.2091 1.9472 2.2375 15 6 3.5802 1.3290 1.8567 16 8 3.8508 0.1966 1.5172 17 7 4.3481 1.9618 2.7656 18 6 4.0852 3.2931 3.3314 19 6 5.2385 3.6130 4.3055 20 6 6.3815 2.6927 3.8017 21 6 5.5942 1.4364 3.3526 22 1 -0.3634 0.5731 0.8530 23 1 -0.3633 0.4523 -0.9228 24 1 -0.3634 -1.0252 0.0696 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.0974 5.1354 -2.1707 28 1 1.0269 0.9054 2.5010 29 1 1.4444 2.5141 3.1383 30 1 0.3182 2.3644 1.7681 31 1 4.0546 4.0354 2.5337 32 1 3.1380 3.2862 3.8708 33 1 4.9639 3.3612 5.3299 34 1 5.5254 4.6617 4.2287 35 1 7.0738 2.4522 4.6084 36 1 6.9063 3.1462 2.9608 37 1 5.3715 0.8017 4.2102 38 1 6.1598 0.8792 2.6057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045060677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:56 Heat of formation + Delta-G solvation = -9.155169 kcal Electronic energy + Delta-G solvation = -18676.799218 eV Core-core repulsion = 15941.180962 eV Total energy + Delta-G solvation = -2735.618256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67058 -37.34899 -35.69735 -32.08838 -31.83423 -30.46913 -28.92283 -28.54120 -24.60124 -23.82492 -22.24682 -21.15054 -20.26282 -18.78512 -16.99853 -16.75440 -16.23086 -15.02746 -14.53953 -14.17492 -13.82909 -13.59232 -13.36813 -13.22867 -12.83353 -12.57008 -12.41759 -12.15836 -11.74988 -11.59615 -11.38600 -11.25825 -11.10907 -11.07226 -10.74953 -10.62799 -10.33386 -10.20153 -9.82775 -9.58146 -9.01602 -8.46295 -8.22198 -6.80064 -6.07466 -3.44800 3.24461 3.33703 3.42152 3.44593 3.49584 4.47528 4.57810 4.66872 4.90386 4.96014 5.24094 5.34835 5.41222 5.46460 5.70583 5.71596 5.80705 5.81164 5.91778 5.95154 6.02132 6.13375 6.17632 6.20275 6.38194 6.43725 6.50808 6.66796 6.73507 6.78948 6.99010 7.25689 7.93744 8.06321 8.41915 8.81182 9.00426 9.66952 10.11865 11.07908 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.009859 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.204740 B = 2839.345090 C = 3302.113669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.146 3.854 3 N -0.577 5.577 4 C -0.269 4.269 5 H 0.079 0.921 6 C 0.039 3.961 7 N -0.889 5.889 8 Si 0.864 3.136 9 H -0.281 1.281 10 H -0.302 1.302 11 H -0.265 1.265 12 C 0.152 3.848 13 H 0.096 0.904 14 C -0.168 4.168 15 C 0.518 3.482 16 O -0.536 6.536 17 N -0.628 5.628 18 C 0.098 3.902 19 C -0.131 4.131 20 C -0.134 4.134 21 C 0.104 3.896 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -0.673 13.886 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 N -0.297 5.297 4 C -0.397 4.397 5 H 0.096 0.904 6 C -0.162 4.162 7 N -0.528 5.528 8 Si 0.693 3.307 9 H -0.208 1.208 10 H -0.230 1.230 11 H -0.191 1.191 12 C 0.040 3.960 13 H 0.114 0.886 14 C -0.227 4.227 15 C 0.306 3.694 16 O -0.412 6.412 17 N -0.366 5.366 18 C -0.026 4.026 19 C -0.168 4.168 20 C -0.172 4.172 21 C -0.019 4.019 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.066 -1.196 13.478 13.874 hybrid contribution -0.705 0.697 0.595 1.156 sum 2.361 -0.499 14.072 14.278 Atomic orbital electron populations 1.22442 0.99765 0.99044 1.01784 1.20902 0.91000 0.85873 1.00144 1.43910 1.72334 1.11555 1.01883 1.18814 1.39028 0.93258 0.88632 0.90370 1.25588 0.97777 0.96421 0.96434 1.69967 1.40268 1.05042 1.37562 0.87255 0.85032 0.77824 0.80601 1.20801 1.22965 1.19084 1.20788 0.89859 0.97558 0.87774 0.88616 1.22481 0.99501 1.02011 0.98733 1.22430 0.84521 0.86377 0.76091 1.90564 1.72053 1.18591 1.59948 1.48898 1.25392 1.18829 1.43437 1.22041 0.98431 0.85399 0.96713 1.22622 0.94997 1.00396 0.98832 1.22784 0.97246 0.95874 1.01288 1.22116 0.85926 0.96000 0.97853 0.93639 0.92736 0.94391 0.93622 0.92608 0.92615 0.92236 0.92914 0.91246 0.91184 0.91590 0.90786 0.90171 0.90260 0.90569 0.92255 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 10.05 37.16 0.37 -3.03 16 2 C 0.15 3.27 5.07 -4.04 -0.02 3.25 16 3 N -0.58 -14.40 1.80 -166.98 -0.30 -14.70 16 4 C -0.27 -7.67 9.81 -15.06 -0.15 -7.82 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 6 C 0.04 1.12 4.98 -17.43 -0.09 1.03 16 7 N -0.89 -26.74 13.97 55.49 0.78 -25.96 16 8 Si 0.86 21.29 23.56 -169.99 -4.01 17.29 16 9 H -0.28 -6.41 6.31 56.52 0.36 -6.05 16 10 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 11 H -0.27 -6.43 6.52 56.52 0.37 -6.06 16 12 C 0.15 3.39 1.38 -69.08 -0.10 3.30 16 13 H 0.10 2.28 4.70 -51.93 -0.24 2.04 16 14 C -0.17 -3.22 6.99 37.16 0.26 -2.96 16 15 C 0.52 11.16 7.02 -10.98 -0.08 11.08 16 16 O -0.54 -12.98 14.69 5.56 0.08 -12.90 16 17 N -0.63 -10.94 3.33 -170.52 -0.57 -11.51 16 18 C 0.10 1.38 6.21 -3.07 -0.02 1.36 16 19 C -0.13 -1.34 6.95 -24.91 -0.17 -1.52 16 20 C -0.13 -1.44 7.08 -24.59 -0.17 -1.61 16 21 C 0.10 1.49 6.89 -2.53 -0.02 1.47 16 22 H 0.04 0.89 5.99 -51.93 -0.31 0.58 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 26 H 0.06 1.23 6.13 -51.93 -0.32 0.91 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.06 1.09 7.20 -51.93 -0.37 0.71 16 29 H 0.05 0.85 6.56 -51.93 -0.34 0.51 16 30 H 0.07 1.41 4.25 -51.93 -0.22 1.19 16 31 H 0.07 1.07 7.77 -51.93 -0.40 0.66 16 32 H 0.07 0.86 6.70 -51.93 -0.35 0.52 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 288.54 15.07 4.35 4.35 Total: -1.00 -32.24 288.54 -5.84 -38.08 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.00 Total: 0.81 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.18 Total: 4.55 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.09 Total: -52.17 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.01 Total: 17.29 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.24 -5.84 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.924 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds