Wall clock time and date at job start Mon Mar 30 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46938 * 2 1 4 4 C 1.36932 * 119.99999 * 275.87728 * 3 2 1 5 5 H 1.08000 * 120.00197 * 320.24763 * 4 3 2 6 6 C 1.38819 * 119.99802 * 140.25199 * 4 3 2 7 7 N 1.31620 * 120.00051 * 152.83846 * 6 4 3 8 8 Si 1.86801 * 119.99685 * 332.55418 * 6 4 3 9 9 H 1.48507 * 109.46746 * 84.27970 * 8 6 4 10 10 H 1.48498 * 109.47298 * 204.27448 * 8 6 4 11 11 H 1.48495 * 109.47712 * 324.28114 * 8 6 4 12 12 C 1.46502 * 119.99985 * 95.88559 * 3 2 1 13 13 H 1.09002 * 109.47026 * 185.39141 * 12 3 2 14 14 C 1.53003 * 109.46873 * 305.39286 * 12 3 2 15 15 C 1.50703 * 109.47305 * 65.39055 * 12 3 2 16 16 O 1.21280 * 119.99892 * 339.42827 * 15 12 3 17 17 N 1.34775 * 119.99984 * 159.43093 * 15 12 3 18 18 C 1.47025 * 125.64839 * 4.35373 * 17 15 12 19 19 C 1.54314 * 107.27473 * 180.97063 * 18 17 15 20 20 C 1.55149 * 102.86542 * 22.52405 * 19 18 17 21 21 C 1.47420 * 125.64884 * 184.66192 * 17 15 12 22 22 H 1.09004 * 109.47397 * 303.89517 * 1 2 3 23 23 H 1.09006 * 109.46690 * 63.88777 * 1 2 3 24 24 H 1.08996 * 109.47562 * 183.88601 * 1 2 3 25 25 H 1.08996 * 109.47381 * 240.00151 * 2 1 3 26 26 H 1.08997 * 109.46882 * 119.99659 * 2 1 3 27 27 H 0.96997 * 119.99868 * 179.72323 * 7 6 4 28 28 H 1.08994 * 109.47468 * 65.61420 * 14 12 3 29 29 H 1.08999 * 109.47171 * 185.61744 * 14 12 3 30 30 H 1.08998 * 109.47090 * 305.61532 * 14 12 3 31 31 H 1.09003 * 109.87978 * 300.51296 * 18 17 15 32 32 H 1.08997 * 109.88037 * 61.68038 * 18 17 15 33 33 H 1.09000 * 110.92185 * 264.11263 * 19 18 17 34 34 H 1.08994 * 110.58912 * 140.78812 * 19 18 17 35 35 H 1.08997 * 111.01065 * 206.23024 * 20 19 18 36 36 H 1.09005 * 111.00560 * 82.37909 * 20 19 18 37 37 H 1.09000 * 110.37108 * 274.67209 * 21 17 15 38 38 H 1.09004 * 110.36522 * 36.88737 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1320 2.0672 -1.1796 5 1 2.4955 1.5646 -2.0637 6 6 1.7801 3.4088 -1.2391 7 7 2.3462 4.1990 -2.1265 8 14 0.4973 4.0907 -0.0649 9 1 1.1453 4.4487 1.2225 10 1 -0.1244 5.3012 -0.6595 11 1 -0.5487 3.0646 0.1760 12 6 2.3851 2.0285 1.2621 13 1 2.6313 3.0739 1.0761 14 6 1.2091 1.9472 2.2375 15 6 3.5802 1.3290 1.8567 16 8 3.8508 0.1966 1.5172 17 7 4.3481 1.9618 2.7656 18 6 4.0852 3.2931 3.3314 19 6 5.2385 3.6130 4.3055 20 6 6.3815 2.6927 3.8017 21 6 5.5942 1.4364 3.3526 22 1 -0.3634 0.5731 0.8530 23 1 -0.3633 0.4523 -0.9228 24 1 -0.3634 -1.0252 0.0696 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.0974 5.1354 -2.1707 28 1 1.0269 0.9054 2.5010 29 1 1.4444 2.5141 3.1383 30 1 0.3182 2.3644 1.7681 31 1 4.0546 4.0354 2.5337 32 1 3.1380 3.2862 3.8708 33 1 4.9639 3.3612 5.3299 34 1 5.5254 4.6617 4.2287 35 1 7.0738 2.4522 4.6084 36 1 6.9063 3.1462 2.9608 37 1 5.3715 0.8017 4.2102 38 1 6.1598 0.8792 2.6057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:56 Heat of formation + Delta-G solvation = -31.368592 kcal Electronic energy + Delta-G solvation = -18677.762464 eV Core-core repulsion = 15941.180962 eV Total energy + Delta-G solvation = -2736.581502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17219 -38.76580 -37.45895 -34.17274 -33.38111 -31.85870 -30.59094 -29.81028 -26.36237 -25.49268 -23.71640 -22.32427 -21.82612 -20.40062 -18.88958 -18.39768 -17.41519 -16.81623 -16.21504 -15.77171 -15.57188 -15.28996 -14.89336 -14.52172 -14.18360 -14.08209 -13.96278 -13.60520 -13.27256 -13.25571 -13.06133 -12.84662 -12.45548 -12.28668 -12.13387 -12.10746 -11.94837 -11.63262 -11.61888 -11.48555 -10.86613 -10.48536 -9.61021 -8.78915 -8.27581 -5.65526 1.29247 1.42835 1.53880 1.68351 2.06180 2.39896 2.95019 3.30621 3.53572 3.69901 3.96766 4.06418 4.19379 4.20734 4.29450 4.39994 4.49597 4.61680 4.68759 4.73403 4.80975 4.86176 4.88247 4.96015 5.01047 5.07213 5.10526 5.14187 5.24153 5.31286 5.49105 5.55581 5.88886 6.14481 6.51475 6.90870 7.24482 7.56398 8.01480 8.92042 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.009859 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.204740 B = 2839.345090 C = 3302.113669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 N -0.590 5.590 4 C -0.275 4.275 5 H 0.027 0.973 6 C -0.009 4.009 7 N -0.937 5.937 8 Si 0.931 3.069 9 H -0.247 1.247 10 H -0.308 1.308 11 H -0.255 1.255 12 C 0.148 3.852 13 H 0.079 0.921 14 C -0.162 4.162 15 C 0.511 3.489 16 O -0.576 6.576 17 N -0.628 5.628 18 C 0.083 3.917 19 C -0.118 4.118 20 C -0.124 4.124 21 C 0.095 3.905 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.267 0.733 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 0.173 17.739 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 N -0.311 5.311 4 C -0.405 4.405 5 H 0.045 0.955 6 C -0.207 4.207 7 N -0.579 5.579 8 Si 0.756 3.244 9 H -0.172 1.172 10 H -0.236 1.236 11 H -0.179 1.179 12 C 0.037 3.963 13 H 0.097 0.903 14 C -0.220 4.220 15 C 0.299 3.701 16 O -0.455 6.455 17 N -0.363 5.363 18 C -0.039 4.039 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.027 4.027 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.461 -0.338 17.400 17.577 hybrid contribution -0.361 0.382 -0.627 0.819 sum 2.100 0.045 16.773 16.904 Atomic orbital electron populations 1.22300 0.97290 1.01188 1.01093 1.20914 0.92914 0.84631 0.99355 1.43952 1.73350 1.12121 1.01722 1.18567 1.39168 0.93695 0.89040 0.95502 1.26183 0.99101 0.96440 0.98935 1.70083 1.41811 1.05545 1.40448 0.86206 0.81761 0.76809 0.79611 1.17202 1.23589 1.17920 1.20843 0.91756 0.96256 0.87422 0.90340 1.22413 0.97399 1.03296 0.98924 1.22096 0.84952 0.86080 0.77000 1.90539 1.73112 1.20201 1.61691 1.48883 1.25485 1.19889 1.42037 1.22388 1.01224 0.83077 0.97202 1.22651 0.92681 1.01338 0.98861 1.22787 0.97521 0.93867 1.02037 1.22384 0.84826 0.97951 0.97543 0.92775 0.94594 0.91062 0.95703 0.92112 0.92429 0.91346 0.89489 0.91906 0.92742 0.89913 0.88211 0.88220 0.86849 0.91511 0.90514 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.15 10.05 71.98 0.72 -5.43 16 2 C 0.15 6.66 5.07 86.38 0.44 7.09 16 3 N -0.59 -29.97 1.80 -682.19 -1.23 -31.20 16 4 C -0.28 -16.43 9.81 84.04 0.82 -15.61 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C -0.01 -0.50 4.98 84.86 0.42 -0.07 16 7 N -0.94 -58.38 13.97 21.65 0.30 -58.08 16 8 Si 0.93 43.74 23.56 68.60 1.62 45.36 16 9 H -0.25 -10.19 6.31 99.48 0.63 -9.56 16 10 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.25 -11.47 6.52 99.48 0.65 -10.82 16 12 C 0.15 6.48 1.38 44.25 0.06 6.54 16 13 H 0.08 3.67 4.70 -2.39 -0.01 3.66 16 14 C -0.16 -5.67 6.99 71.98 0.50 -5.17 16 15 C 0.51 21.83 7.02 87.66 0.62 22.45 16 16 O -0.58 -28.36 14.69 -3.03 -0.04 -28.40 16 17 N -0.63 -20.86 3.33 -811.81 -2.70 -23.56 16 18 C 0.08 2.09 6.21 86.72 0.54 2.63 16 19 C -0.12 -1.88 6.95 31.78 0.22 -1.66 16 20 C -0.12 -2.24 7.08 31.98 0.23 -2.01 16 21 C 0.10 2.54 6.89 86.86 0.60 3.14 16 22 H 0.05 1.98 5.99 -2.38 -0.01 1.96 16 23 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.02 1.19 8.09 -2.39 -0.02 1.17 16 26 H 0.06 2.69 6.13 -2.39 -0.01 2.67 16 27 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.07 2.28 7.20 -2.39 -0.02 2.26 16 29 H 0.09 2.42 6.56 -2.39 -0.02 2.41 16 30 H 0.06 2.30 4.25 -2.39 -0.01 2.29 16 31 H 0.05 1.54 7.77 -2.39 -0.02 1.52 16 32 H 0.08 1.80 6.70 -2.39 -0.02 1.79 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.55 8.08 -2.38 -0.02 1.53 16 Total: -1.00 -74.00 288.54 4.01 -69.99 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.90 Total: 14.00 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.17 Total: 11.90 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -3.63 Total: -112.84 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.04 Total: -28.40 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.62 Total: 45.36 kcal Total: -74.00 4.01 -69.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.617 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds