Wall clock time and date at job start Mon Mar 30 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47387 * 2 1 4 4 C 1.36939 * 119.99591 * 264.02902 * 3 2 1 5 5 H 1.07998 * 119.99389 * 185.47124 * 4 3 2 6 6 C 1.38810 * 120.00106 * 5.46742 * 4 3 2 7 7 N 1.31618 * 120.00038 * 33.92608 * 6 4 3 8 8 Si 1.86798 * 120.00092 * 213.91999 * 6 4 3 9 9 H 1.48501 * 109.47112 * 95.00060 * 8 6 4 10 10 H 1.48494 * 109.47500 * 215.00302 * 8 6 4 11 11 H 1.48503 * 109.47147 * 335.00761 * 8 6 4 12 12 C 1.46494 * 119.99961 * 84.01590 * 3 2 1 13 13 C 1.50695 * 109.47600 * 270.00499 * 12 3 2 14 14 O 1.21286 * 120.00159 * 0.02562 * 13 12 3 15 15 N 1.34773 * 120.00317 * 179.97438 * 13 12 3 16 16 C 1.46503 * 119.99924 * 5.02114 * 15 13 12 17 17 C 1.52998 * 109.47063 * 269.99783 * 16 15 13 18 18 C 1.46501 * 120.00226 * 185.01801 * 15 13 12 19 19 C 1.52998 * 117.49837 * 182.57815 * 18 15 13 20 20 C 1.53000 * 117.49847 * 113.91826 * 18 15 13 21 21 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47160 * 299.99639 * 1 2 3 23 23 H 1.08992 * 109.47170 * 60.00372 * 1 2 3 24 24 H 1.09000 * 109.47262 * 239.99721 * 2 1 3 25 25 H 1.09004 * 109.47615 * 119.99610 * 2 1 3 26 26 H 0.97000 * 120.00219 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46735 * 150.00576 * 12 3 2 28 28 H 1.08999 * 109.47170 * 30.01032 * 12 3 2 29 29 H 1.08997 * 109.47124 * 29.99626 * 16 15 13 30 30 H 1.09000 * 109.47417 * 150.00106 * 16 15 13 31 31 H 1.08999 * 109.47230 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47380 * 300.00234 * 17 16 15 33 33 H 1.09001 * 109.47476 * 59.99855 * 17 16 15 34 34 H 1.09002 * 115.55171 * 328.24339 * 18 15 13 35 35 H 1.09003 * 117.50473 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.50081 * 145.01798 * 19 18 15 37 37 H 1.08999 * 117.49584 * 214.97784 * 20 18 15 38 38 H 1.08999 * 117.49829 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3629 1.9856 -1.1795 5 1 2.8056 2.9706 -1.1723 6 6 2.1433 1.3320 -2.3843 7 7 1.0988 0.5436 -2.5245 8 14 3.3302 1.5715 -3.8067 9 1 4.3343 0.4775 -3.8032 10 1 2.5789 1.5497 -5.0874 11 1 4.0211 2.8779 -3.6603 12 6 2.1379 2.1159 1.2618 13 6 0.8467 2.8388 1.5465 14 8 -0.0823 2.7489 0.7719 15 7 0.7237 3.5845 2.6623 16 6 1.8783 3.7822 3.5422 17 6 1.9128 2.6729 4.5953 18 6 -0.5646 4.1975 2.9955 19 6 -0.6247 5.0816 4.2427 20 6 -1.2804 3.6984 4.2523 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5137 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.9451 0.0872 -3.3665 27 1 2.9500 2.8390 1.1856 28 1 2.3488 1.4166 2.0708 29 1 2.7942 3.7516 2.9521 30 1 1.7968 4.7502 4.0367 31 1 2.7716 2.8203 5.2502 32 1 0.9969 2.7035 5.1854 33 1 1.9943 1.7049 4.1009 34 1 -1.1826 4.4847 2.1448 35 1 0.2941 5.2069 4.8157 36 1 -1.2826 5.9502 4.2127 37 1 -2.3693 3.6576 4.2285 38 1 -0.7930 2.9138 4.8309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:44 Heat of formation + Delta-G solvation = 31.508503 kcal Electronic energy + Delta-G solvation = -18333.153464 eV Core-core repulsion = 15599.298517 eV Total energy + Delta-G solvation = -2733.854947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51542 -37.05820 -35.28954 -34.03353 -31.24813 -29.98834 -29.43884 -26.62523 -23.58218 -23.44027 -22.11984 -21.65742 -20.21550 -18.59348 -16.93016 -16.50441 -16.03516 -14.85505 -14.75824 -14.26215 -13.64951 -13.50228 -13.47715 -13.03118 -12.85889 -12.33966 -11.84721 -11.76124 -11.68291 -11.36075 -11.34208 -10.83074 -10.76237 -10.69573 -10.58902 -10.36583 -10.35259 -9.91288 -9.65967 -9.23114 -8.91722 -8.20382 -8.00257 -6.90570 -5.75386 -2.95879 3.34703 3.46225 3.48087 3.54045 3.54966 4.01882 4.56857 4.86714 4.94565 5.05007 5.07080 5.28555 5.37502 5.42072 5.50793 5.57546 5.69715 5.78601 5.83500 5.93338 6.10689 6.17475 6.24324 6.26101 6.36025 6.62302 7.02028 7.06700 7.18936 7.26231 7.69557 7.86382 8.01303 8.30637 8.36378 9.11573 9.26283 9.89416 10.33950 11.30128 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034684 B = 0.006683 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.099092 B = 4188.550387 C = 4294.568695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.165 3.835 3 N -0.568 5.568 4 C -0.258 4.258 5 H 0.075 0.925 6 C 0.007 3.993 7 N -0.875 5.875 8 Si 0.887 3.113 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.280 1.280 12 C 0.136 3.864 13 C 0.474 3.526 14 O -0.501 6.501 15 N -0.604 5.604 16 C 0.105 3.895 17 C -0.175 4.175 18 C 0.090 3.910 19 C -0.193 4.193 20 C -0.199 4.199 21 H 0.011 0.989 22 H 0.020 0.980 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.005 0.995 26 H 0.252 0.748 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 5.199 14.680 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.040 3.960 3 N -0.286 5.286 4 C -0.386 4.386 5 H 0.093 0.907 6 C -0.192 4.192 7 N -0.518 5.518 8 Si 0.716 3.284 9 H -0.216 1.216 10 H -0.222 1.222 11 H -0.206 1.206 12 C 0.003 3.997 13 C 0.260 3.740 14 O -0.372 6.372 15 N -0.341 5.341 16 C -0.018 4.018 17 C -0.234 4.234 18 C -0.015 4.015 19 C -0.230 4.230 20 C -0.238 4.238 21 H 0.030 0.970 22 H 0.039 0.961 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.430 4.987 13.996 14.864 hybrid contribution 0.255 0.246 -0.542 0.647 sum 0.686 5.233 13.455 14.453 Atomic orbital electron populations 1.22253 0.98505 0.97230 1.02523 1.20839 0.93087 0.84065 0.97960 1.44388 1.73522 1.09533 1.01156 1.19188 1.33528 1.02220 0.83682 0.90706 1.24661 0.97228 1.00403 0.96882 1.70332 1.23121 1.33553 1.24770 0.86483 0.82055 0.77762 0.82084 1.21582 1.22158 1.20564 1.20989 0.92803 0.95053 0.90851 1.23694 0.93270 0.78176 0.78854 1.90684 1.41255 1.59911 1.45323 1.48142 1.08542 1.52366 1.25081 1.21485 0.89290 0.98514 0.92520 1.22349 1.01760 1.00070 0.99175 1.21531 0.88705 0.99433 0.91834 1.23292 1.03097 0.94645 1.02009 1.23430 0.99932 0.97034 1.03425 0.97029 0.96079 0.88885 0.90042 0.97690 0.93823 0.90883 0.91426 0.90073 0.90872 0.91940 0.92511 0.91974 0.85851 0.88418 0.88502 0.88796 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.78 37.16 0.33 -3.41 16 2 C 0.17 4.16 5.65 -4.04 -0.02 4.14 16 3 N -0.57 -14.45 2.12 -174.61 -0.37 -14.82 16 4 C -0.26 -7.20 9.63 -15.06 -0.15 -7.34 16 5 H 0.08 2.06 8.01 -52.49 -0.42 1.64 16 6 C 0.01 0.21 4.68 -17.43 -0.08 0.13 16 7 N -0.87 -25.61 9.14 55.49 0.51 -25.11 16 8 Si 0.89 21.85 29.67 -169.99 -5.04 16.80 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.14 2.77 4.86 -5.20 -0.03 2.75 16 13 C 0.47 9.94 7.38 -10.99 -0.08 9.86 16 14 O -0.50 -12.99 13.80 5.55 0.08 -12.92 16 15 N -0.60 -9.74 2.80 -166.11 -0.47 -10.20 16 16 C 0.11 1.25 5.43 -4.04 -0.02 1.23 16 17 C -0.18 -1.84 10.20 37.16 0.38 -1.46 16 18 C 0.09 1.35 6.14 -67.93 -0.42 0.93 16 19 C -0.19 -2.10 9.74 -26.69 -0.26 -2.36 16 20 C -0.20 -2.46 10.20 -26.69 -0.27 -2.73 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.02 0.52 6.42 -51.93 -0.33 0.19 16 23 H 0.09 2.75 6.36 -51.93 -0.33 2.42 16 24 H 0.08 2.23 5.95 -51.93 -0.31 1.92 16 25 H 0.00 0.11 7.98 -51.93 -0.41 -0.30 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.07 1.37 7.14 -51.93 -0.37 1.00 16 28 H 0.07 1.21 6.75 -51.93 -0.35 0.86 16 29 H 0.08 0.94 6.48 -51.93 -0.34 0.60 16 30 H 0.07 0.73 6.00 -51.93 -0.31 0.42 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 5.91 -51.93 -0.31 0.28 16 33 H 0.06 0.74 6.94 -51.93 -0.36 0.38 16 34 H 0.12 2.09 7.76 -51.93 -0.40 1.68 16 35 H 0.10 0.95 6.12 -51.93 -0.32 0.63 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.16 6.13 -51.93 -0.32 0.85 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -32.46 296.34 -7.16 -39.62 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.71 Total: 0.42 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.62 Total: 1.74 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.33 Total: -50.13 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.80 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.46 -7.16 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.130 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds