Wall clock time and date at job start Mon Mar 30 2020 04:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47387 * 2 1 4 4 C 1.36939 * 119.99591 * 264.02902 * 3 2 1 5 5 H 1.07998 * 119.99389 * 185.47124 * 4 3 2 6 6 C 1.38810 * 120.00106 * 5.46742 * 4 3 2 7 7 N 1.31618 * 120.00038 * 33.92608 * 6 4 3 8 8 Si 1.86798 * 120.00092 * 213.91999 * 6 4 3 9 9 H 1.48501 * 109.47112 * 95.00060 * 8 6 4 10 10 H 1.48494 * 109.47500 * 215.00302 * 8 6 4 11 11 H 1.48503 * 109.47147 * 335.00761 * 8 6 4 12 12 C 1.46494 * 119.99961 * 84.01590 * 3 2 1 13 13 C 1.50695 * 109.47600 * 270.00499 * 12 3 2 14 14 O 1.21286 * 120.00159 * 0.02562 * 13 12 3 15 15 N 1.34773 * 120.00317 * 179.97438 * 13 12 3 16 16 C 1.46503 * 119.99924 * 5.02114 * 15 13 12 17 17 C 1.52998 * 109.47063 * 269.99783 * 16 15 13 18 18 C 1.46501 * 120.00226 * 185.01801 * 15 13 12 19 19 C 1.52998 * 117.49837 * 182.57815 * 18 15 13 20 20 C 1.53000 * 117.49847 * 113.91826 * 18 15 13 21 21 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47160 * 299.99639 * 1 2 3 23 23 H 1.08992 * 109.47170 * 60.00372 * 1 2 3 24 24 H 1.09000 * 109.47262 * 239.99721 * 2 1 3 25 25 H 1.09004 * 109.47615 * 119.99610 * 2 1 3 26 26 H 0.97000 * 120.00219 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46735 * 150.00576 * 12 3 2 28 28 H 1.08999 * 109.47170 * 30.01032 * 12 3 2 29 29 H 1.08997 * 109.47124 * 29.99626 * 16 15 13 30 30 H 1.09000 * 109.47417 * 150.00106 * 16 15 13 31 31 H 1.08999 * 109.47230 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47380 * 300.00234 * 17 16 15 33 33 H 1.09001 * 109.47476 * 59.99855 * 17 16 15 34 34 H 1.09002 * 115.55171 * 328.24339 * 18 15 13 35 35 H 1.09003 * 117.50473 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.50081 * 145.01798 * 19 18 15 37 37 H 1.08999 * 117.49584 * 214.97784 * 20 18 15 38 38 H 1.08999 * 117.49829 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3629 1.9856 -1.1795 5 1 2.8056 2.9706 -1.1723 6 6 2.1433 1.3320 -2.3843 7 7 1.0988 0.5436 -2.5245 8 14 3.3302 1.5715 -3.8067 9 1 4.3343 0.4775 -3.8032 10 1 2.5789 1.5497 -5.0874 11 1 4.0211 2.8779 -3.6603 12 6 2.1379 2.1159 1.2618 13 6 0.8467 2.8388 1.5465 14 8 -0.0823 2.7489 0.7719 15 7 0.7237 3.5845 2.6623 16 6 1.8783 3.7822 3.5422 17 6 1.9128 2.6729 4.5953 18 6 -0.5646 4.1975 2.9955 19 6 -0.6247 5.0816 4.2427 20 6 -1.2804 3.6984 4.2523 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5137 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.9451 0.0872 -3.3665 27 1 2.9500 2.8390 1.1856 28 1 2.3488 1.4166 2.0708 29 1 2.7942 3.7516 2.9521 30 1 1.7968 4.7502 4.0367 31 1 2.7716 2.8203 5.2502 32 1 0.9969 2.7035 5.1854 33 1 1.9943 1.7049 4.1009 34 1 -1.1826 4.4847 2.1448 35 1 0.2941 5.2069 4.8157 36 1 -1.2826 5.9502 4.2127 37 1 -2.3693 3.6576 4.2285 38 1 -0.7930 2.9138 4.8309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:43 Heat of formation + Delta-G solvation = 11.399290 kcal Electronic energy + Delta-G solvation = -18334.025464 eV Core-core repulsion = 15599.298517 eV Total energy + Delta-G solvation = -2734.726948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.91919 -38.49484 -37.15514 -35.20509 -33.27468 -31.45734 -31.01447 -28.46255 -25.42156 -24.55299 -23.36110 -22.95671 -21.96001 -19.91963 -18.69541 -18.12435 -17.40171 -16.70854 -16.24496 -15.71387 -15.36033 -15.10482 -14.73064 -14.37892 -13.99644 -13.87988 -13.66134 -13.53256 -13.13725 -12.80480 -12.67086 -12.58715 -12.36240 -12.30672 -11.92180 -11.81641 -11.68639 -11.56274 -11.38201 -11.28454 -10.68017 -10.23216 -9.28881 -8.90558 -7.85033 -5.07468 1.48988 1.51547 1.60232 1.92632 2.12118 2.56797 2.96496 3.22759 3.65584 3.82201 3.92278 4.08811 4.12540 4.21803 4.41772 4.53260 4.60303 4.65807 4.67253 4.79756 4.86855 4.92595 5.01337 5.05633 5.13311 5.14476 5.23823 5.24827 5.46692 5.59427 5.75576 5.87126 6.16602 6.28856 6.63109 7.17539 7.55838 7.90793 8.29865 9.19577 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034684 B = 0.006683 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.099092 B = 4188.550387 C = 4294.568695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.169 3.831 3 N -0.585 5.585 4 C -0.265 4.265 5 H 0.072 0.928 6 C -0.046 4.046 7 N -0.906 5.906 8 Si 0.953 3.047 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.271 1.271 12 C 0.133 3.867 13 C 0.472 3.528 14 O -0.565 6.565 15 N -0.593 5.593 16 C 0.096 3.904 17 C -0.170 4.170 18 C 0.046 3.954 19 C -0.153 4.153 20 C -0.192 4.192 21 H 0.026 0.974 22 H 0.016 0.984 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.246 0.754 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 6.238 17.380 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.044 3.956 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.090 0.910 6 C -0.242 4.242 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.231 1.231 11 H -0.196 1.196 12 C 0.003 3.997 13 C 0.259 3.741 14 O -0.442 6.442 15 N -0.328 5.328 16 C -0.026 4.026 17 C -0.228 4.228 18 C -0.059 4.059 19 C -0.190 4.190 20 C -0.231 4.231 21 H 0.045 0.955 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.910 6.075 16.789 17.956 hybrid contribution -0.224 0.021 -1.212 1.233 sum 1.686 6.096 15.576 16.811 Atomic orbital electron populations 1.22015 0.99213 0.97344 1.00055 1.20733 0.92387 0.84469 0.98053 1.44503 1.73891 1.10012 1.02023 1.19438 1.32987 1.02121 0.84940 0.90979 1.25386 0.98400 1.01102 0.99345 1.70494 1.24450 1.35158 1.25022 0.85458 0.79734 0.77982 0.78650 1.21085 1.23109 1.19613 1.21191 0.92939 0.95864 0.89755 1.23412 0.92467 0.78602 0.79643 1.90667 1.43061 1.62558 1.47904 1.47914 1.10302 1.50492 1.24104 1.21858 0.87638 1.00651 0.92455 1.22293 1.03256 0.98369 0.98838 1.21536 0.88529 1.03327 0.92497 1.23417 1.03728 0.94233 0.97661 1.23471 1.00261 0.98474 1.00883 0.95472 0.96499 0.93192 0.92660 0.94552 0.94485 0.89083 0.88490 0.89592 0.88146 0.88972 0.92282 0.93596 0.89175 0.86199 0.86735 0.88341 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 8.78 71.98 0.63 -6.03 16 2 C 0.17 8.54 5.65 86.38 0.49 9.03 16 3 N -0.59 -29.89 2.12 -706.35 -1.49 -31.39 16 4 C -0.27 -15.01 9.63 84.03 0.81 -14.20 16 5 H 0.07 4.01 8.01 -2.91 -0.02 3.99 16 6 C -0.05 -2.65 4.68 84.86 0.40 -2.25 16 7 N -0.91 -54.97 9.14 21.65 0.20 -54.77 16 8 Si 0.95 45.92 29.67 68.60 2.04 47.95 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.13 5.31 4.86 85.63 0.42 5.73 16 13 C 0.47 19.80 7.38 87.66 0.65 20.45 16 14 O -0.57 -30.48 13.80 -3.05 -0.04 -30.52 16 15 N -0.59 -18.33 2.80 -797.84 -2.23 -20.56 16 16 C 0.10 1.95 5.43 86.38 0.47 2.42 16 17 C -0.17 -2.90 10.20 71.98 0.73 -2.16 16 18 C 0.05 1.34 6.14 44.99 0.28 1.61 16 19 C -0.15 -2.79 9.74 30.62 0.30 -2.49 16 20 C -0.19 -4.31 10.20 30.62 0.31 -4.00 16 21 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.02 0.85 6.42 -2.39 -0.02 0.83 16 23 H 0.05 3.07 6.36 -2.39 -0.02 3.05 16 24 H 0.06 3.09 5.95 -2.39 -0.01 3.07 16 25 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.09 3.26 7.14 -2.39 -0.02 3.24 16 28 H 0.10 3.25 6.75 -2.39 -0.02 3.24 16 29 H 0.09 1.70 6.48 -2.39 -0.02 1.68 16 30 H 0.10 1.54 6.00 -2.39 -0.01 1.52 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.00 5.91 -2.39 -0.01 0.98 16 33 H 0.04 0.94 6.94 -2.39 -0.02 0.93 16 34 H 0.09 3.19 7.76 -2.39 -0.02 3.17 16 35 H 0.12 1.69 6.12 -2.39 -0.01 1.67 16 36 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.10 2.16 6.13 -2.39 -0.01 2.15 16 Total: -1.00 -73.92 296.34 4.98 -68.94 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.04 Total: 12.25 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.48 Total: 8.11 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -3.53 Total: -106.72 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.52 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.04 Total: 47.95 kcal Total: -73.92 4.98 -68.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.336 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds