Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46880 * 2 1 4 4 C 1.34772 * 120.00220 * 269.99630 * 3 2 1 5 5 O 1.21284 * 120.00478 * 185.01166 * 4 3 2 6 6 C 1.50709 * 119.99915 * 5.01401 * 4 3 2 7 7 N 1.46898 * 109.47123 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99603 * 66.04928 * 7 6 4 9 9 C 1.46898 * 110.99780 * 189.99886 * 7 6 4 10 10 C 1.50702 * 109.47230 * 170.00195 * 9 7 6 11 11 H 1.07999 * 119.99617 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00532 * 179.97438 * 10 9 7 13 13 N 1.31522 * 119.99494 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00495 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47132 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47239 * 120.00013 * 14 12 10 17 17 H 1.48498 * 109.47361 * 240.00313 * 14 12 10 18 18 C 1.46506 * 120.00318 * 90.00047 * 3 2 1 19 19 C 1.52998 * 117.49587 * 2.81536 * 18 3 2 20 20 C 1.52997 * 117.49632 * 294.16027 * 18 3 2 21 21 H 1.08997 * 109.46857 * 300.00297 * 1 2 3 22 22 H 1.08999 * 109.46813 * 60.00144 * 1 2 3 23 23 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47458 * 240.00055 * 2 1 3 25 25 H 1.08999 * 109.46813 * 119.99856 * 2 1 3 26 26 H 1.08994 * 109.47042 * 300.00486 * 6 4 3 27 27 H 1.09007 * 109.46648 * 59.99775 * 6 4 3 28 28 H 1.09002 * 109.47490 * 59.99922 * 8 7 6 29 29 H 1.08999 * 109.47017 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47646 * 299.99755 * 8 7 6 31 31 H 1.09000 * 109.47184 * 290.00303 * 9 7 6 32 32 H 1.08998 * 109.47188 * 50.00492 * 9 7 6 33 33 H 0.97003 * 119.99720 * 179.97438 * 13 12 10 34 34 H 1.08995 * 115.55060 * 148.48960 * 18 3 2 35 35 H 1.09006 * 117.49983 * 0.02562 * 19 18 3 36 36 H 1.09005 * 117.50279 * 145.02029 * 19 18 3 37 37 H 1.09003 * 117.50079 * 214.97819 * 20 18 3 38 38 H 1.09007 * 117.49969 * 359.97335 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.7326 3.1262 -1.1692 6 6 1.8859 1.3482 -2.4698 7 7 2.2253 2.2398 -3.5868 8 6 3.6782 2.4355 -3.6813 9 6 1.6795 1.7302 -4.8518 10 6 1.8309 2.7791 -5.9232 11 1 2.2875 3.7292 -5.6880 12 6 1.3877 2.5256 -7.2039 13 7 0.8322 1.3684 -7.4904 14 14 1.5761 3.8255 -8.5320 15 1 2.2279 5.0297 -7.9572 16 1 2.4135 3.2889 -9.6347 17 1 0.2372 4.1914 -9.0601 18 6 2.2625 2.0719 1.2687 19 6 2.0519 1.2760 2.5583 20 6 1.0525 2.3641 2.1582 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.4439 0.4168 -2.5653 27 1 0.8170 1.1348 -2.4876 28 1 4.1648 1.4734 -3.8417 29 1 3.9019 3.0991 -4.5166 30 1 4.0461 2.8789 -2.7560 31 1 2.2208 0.8306 -5.1449 32 1 0.6235 1.4928 -4.7225 33 1 0.5200 1.1902 -8.3913 34 1 3.0674 2.8068 1.2566 35 1 1.7320 0.2383 2.4627 36 1 2.7180 1.4874 3.3948 37 1 1.0614 3.2911 2.7317 38 1 0.0746 2.0429 1.7993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049302803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = 6.259848 kcal Electronic energy + Delta-G solvation = -17652.018307 eV Core-core repulsion = 14917.068496 eV Total energy + Delta-G solvation = -2734.949811 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02947 -37.54236 -35.72704 -34.36134 -32.45283 -30.31123 -28.24529 -26.86850 -24.29742 -23.84548 -22.37591 -21.93071 -20.35042 -18.85115 -17.30604 -16.57611 -15.98955 -15.40297 -14.84268 -14.53997 -14.03235 -13.90045 -13.75677 -13.55639 -13.21948 -12.72274 -12.40474 -12.01325 -11.85610 -11.55987 -11.48311 -11.10682 -11.00496 -10.81112 -10.78871 -10.66764 -10.59009 -10.45528 -9.93755 -9.42743 -9.04016 -8.43991 -8.40785 -7.19915 -6.01142 -4.01416 2.88911 2.95220 3.33945 3.41095 3.47888 3.72869 4.45500 4.58180 4.69361 4.79455 4.83419 4.96506 5.12952 5.15270 5.21371 5.35351 5.42011 5.58495 5.61355 5.70601 5.79553 5.83012 5.87647 5.99078 6.16541 6.34911 6.43157 6.65996 6.93400 7.24769 7.32252 7.48914 7.83421 8.07219 8.21188 8.49372 8.59169 9.07093 9.62729 11.10047 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043957 B = 0.004966 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.840014 B = 5637.087001 C = 5939.474845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 N -0.597 5.597 4 C 0.521 3.479 5 O -0.514 6.514 6 C 0.041 3.959 7 N -0.524 5.524 8 C 0.033 3.967 9 C 0.193 3.807 10 C -0.504 4.504 11 H 0.066 0.934 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.087 3.913 19 C -0.189 4.189 20 C -0.196 4.196 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.004 0.996 29 H 0.074 0.926 30 H 0.064 0.936 31 H -0.008 1.008 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -4.883 18.186 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.022 4.022 3 N -0.332 5.332 4 C 0.309 3.691 5 O -0.387 6.387 6 C -0.091 4.091 7 N -0.249 5.249 8 C -0.115 4.115 9 C 0.068 3.932 10 C -0.542 4.542 11 H 0.084 0.916 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.017 4.017 19 C -0.227 4.227 20 C -0.234 4.234 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.023 0.977 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.822 -3.907 18.068 18.504 hybrid contribution 0.213 -0.373 -0.884 0.983 sum 1.035 -4.280 17.184 17.739 Atomic orbital electron populations 1.22356 0.95816 1.02423 1.03013 1.21624 0.94682 0.82540 1.03387 1.47567 1.67221 1.13802 1.04618 1.21008 0.77247 0.86060 0.84749 1.90635 1.41736 1.19603 1.86745 1.22020 1.02229 0.94679 0.90170 1.61854 1.12704 1.45933 1.04396 1.22363 0.87646 0.99054 1.02452 1.19792 0.94840 0.94573 0.83998 1.21205 1.38850 1.01081 0.93083 0.91612 1.24980 0.95365 0.95681 0.98633 1.69972 1.41171 1.22508 1.20433 0.86420 0.77745 0.81756 0.81418 1.19570 1.21132 1.21011 1.21525 0.99946 0.99365 0.80898 1.23338 1.03603 0.97728 0.97993 1.23477 0.95757 1.00096 1.04101 0.92208 0.91684 0.91448 0.89888 0.90218 0.93232 0.88497 0.97740 0.90702 0.91766 0.99000 0.95206 0.93023 0.85385 0.88197 0.88111 0.88369 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 10.19 37.16 0.38 -1.29 16 2 C 0.10 1.01 5.44 -4.04 -0.02 0.99 16 3 N -0.60 -7.99 2.80 -166.11 -0.47 -8.45 16 4 C 0.52 9.18 7.39 -10.98 -0.08 9.10 16 5 O -0.51 -10.91 14.08 5.55 0.08 -10.83 16 6 C 0.04 0.75 4.12 -4.97 -0.02 0.73 16 7 N -0.52 -12.19 4.49 -245.82 -1.10 -13.29 16 8 C 0.03 0.73 9.03 60.06 0.54 1.27 16 9 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 10 C -0.50 -14.56 8.46 -34.44 -0.29 -14.85 16 11 H 0.07 1.92 7.12 -52.49 -0.37 1.55 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.09 1.04 6.15 -67.93 -0.42 0.62 16 19 C -0.19 -1.59 9.74 -26.70 -0.26 -1.85 16 20 C -0.20 -1.93 10.19 -26.70 -0.27 -2.20 16 21 H 0.06 0.54 5.89 -51.93 -0.31 0.23 16 22 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.83 6.48 -51.93 -0.34 0.49 16 25 H 0.08 0.63 5.99 -51.93 -0.31 0.32 16 26 H 0.05 0.84 7.23 -51.93 -0.38 0.46 16 27 H 0.10 1.69 6.73 -51.93 -0.35 1.34 16 28 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 1.73 6.76 -51.93 -0.35 1.38 16 30 H 0.06 1.36 5.88 -51.93 -0.31 1.06 16 31 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 32 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.13 1.67 7.75 -51.93 -0.40 1.27 16 35 H 0.10 0.75 6.11 -51.93 -0.32 0.43 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.99 6.11 -51.92 -0.32 0.67 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -32.83 302.33 -7.55 -40.38 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.77 Total: -2.34 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.56 Total: -0.92 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.83 Total: -47.89 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.83 -7.55 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049302803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.643 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds